45
Views
3
CrossRef citations to date
0
Altmetric
Original Research

Epidemiological and molecular analysis of avian influenza A(H7N9) virus in Shanghai, China, 2013–2017

, , , &
Pages 2411-2424 | Published online: 22 Nov 2018

References

  • Food and Agricultural Organization of the United Nations [webpage on the Internet]. H7N9 situation update; 2018. Available from: http://www.fao.org/ag/againfo/programmes/en/empres/H7N9/situation_update.html. Accessed June 4, 2018.
  • Yang L, Zhu W, Li X, et al. Genesis and Spread of Newly Emerged Highly Pathogenic H7N9 Avian Viruses in Mainland China. J Virol. 2017;91(23).
  • Wang X, Jiang H, Wu P, et al. Epidemiology of avian influenza A H7N9 virus in human beings across five epidemics in mainland China, 2013-17: an epidemiological study of laboratory-confirmed case series. Lancet Infect Dis. 2017;17(8):822–832.
  • Peiris JS, Cowling BJ, Wu JT, et al. Interventions to reduce zoonotic and pandemic risks from avian influenza in Asia. Lancet Infect Dis. 2016;16(2):252–258.
  • Zhang F, Bi Y, Wang J, et al. Human infections with recently-emerging highly pathogenic H7N9 avian influenza virus in China. J Infect. 2017;75(1):71–75.
  • Quan C, Shi W, Yang Y, et al. New Threats from H7N9 Influenza Virus: Spread and Evolution of High- and Low-Pathogenicity Variants with High Genomic Diversity in Wave Five. J Virol. 2018;92(11).
  • Qin Y, Horby PW, Tsang TK, et al. Differences in the Epidemiology of Human Cases of Avian Influenza A(H7N9) and A(H5N1) Viruses Infection. Clin Infect Dis. 2015;61(4):563–571.
  • Iuliano AD, Jang Y, Jones J, et al. Increase in Human Infections with Avian Influenza A(H7N9) Virus During the Fifth Epidemic - China, October 2016-February 2017. MMWR. 2017;66(9):254–255.
  • Zhu Y, Qi X, Cui L, Zhou M, Wang H. Human co-infection with novel avian influenza A H7N9 and influenza A H3N2 viruses in Jiangsu province, China. Lancet. 2013;381(9883):2134.
  • Kile JC, Ren R, Liu L, et al. Update: Increase in Human Infections with Novel Asian Lineage Avian Influenza A (H7N9) Viruses During the Fifth Epidemic – China, October 1, 2016–August 7, 2017. MMWR. 2017;66(35):928–932.
  • Gao R, Cao B, Hu Y, et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med. 2013;368(20):1888–1897.
  • Capua I, Alexander DJ. Avian influenza: recent developments. Avian Pathol. 2004;33(4):393–404.
  • Alvarez P, Mattiello R, Rivailler P, et al. First isolation of an H1N1 avian influenza virus from wild terrestrial non-migratory birds in Argentina. Virology. 2010;396(1):76–84.
  • Bai Q, Chen J, Chen Z, Zeng Q. Identification of coastal wetlands of international importance for waterbirds: a review of China Coastal Waterbird Surveys 2005–2013. Avian Res. 2015;6(1):12.
  • Larkin MA, Blackshields G, Brown NP, et al. Clustal W and Clustal X version 2.0. Bioinformatics. 2007;23(21):2947–2948.
  • Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol. 2016;33(7):1870–1874.
  • Xiong X, Martin SR, Haire LF, et al. Receptor binding by an H7N9 influenza virus from humans. Nature. 2013;499(7459):496–499.
  • Munier S, Larcher T, Cormier-Aline F, et al. A genetically engineered waterfowl influenza virus with a deletion in the stalk of the neuraminidase has increased virulence for chickens. J Virol. 2010;84(2):940–952.
  • van Riel D, Munster VJ, de Wit E, et al. H5N1 Virus Attachment to Lower Respiratory Tract. Science. 2006;312(5772):399.
  • Li Z, Chen H, Jiao P, et al. Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model. J Virol. 2005;79(18):12058–12064.
  • Ren L, Yu X, Zhao B, et al. Infection with possible precursor of avian influenza A(H7N9) virus in a child, China, 2013. Emerg Infect Dis. 2014;20(8):1362–1365.
  • Rogers GN, Paulson JC, Daniels RS, Skehel JJ, Wilson IA, Wiley DC. Single amino acid substitutions in influenza haemagglutinin change receptor binding specificity. Nature. 1983;304(5921):76–78.
  • Imai M, Watanabe T, Hatta M, et al. Experimental adaptation of an influenza H5 haemagglutinin (HA) confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature. 2012;486(7403):420–428.
  • Wang D, Yang L, Gao R, et al. Genetic tuning of the novel avian influenza A(H7N9) virus during interspecies transmission, China, 2013. Euro Surveill. 2014;19(25).
  • Lam TT, Hon CC, Tang JW. Use of phylogenetics in the molecular epidemiology and evolutionary studies of viral infections. Crit Rev Clin Lab Sci. 2010;47(1):5–49.
  • Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol Rev. 1992;56(1):152–179.
  • Schrauwen EJ, Herfst S, Leijten LM, et al. The multibasic cleavage site in H5N1 virus is critical for systemic spread along the olfactory and hematogenous routes in ferrets. J Virol. 2012;86(7):3975–3984.
  • Shinya K, Makino A, Hatta M, et al. Subclinical brain injury caused by H5N1 influenza virus infection. J Virol. 2011;85(10):5202–5207.
  • Shinya K, Makino A, Tanaka H, et al. Systemic dissemination of H5N1 influenza A viruses in ferrets and hamsters after direct intragastric inoculation. J Virol. 2011;85(10):4673–4678.
  • Horimoto T, Kawaoka Y. Reverse genetics provides direct evidence for a correlation of hemagglutinin cleavability and virulence of an avian influenza A virus. J Virol. 1994;68(5):3120–3128.
  • McKimm-Breschkin J, Trivedi T, Hampson A, et al. Neuraminidase sequence analysis and susceptibilities of influenza virus clinical isolates to zanamivir and oseltamivir. Antimicrob Agents Chemother. 2003;47(7):2264–2272.
  • Sha J, Chen X, Ren Y, et al. Differences in the epidemiology and virology of mild, severe and fatal human infections with avian influenza A (H7N9) virus. Arch Virol. 2016;161(5):1239–1259.
  • Zhou L, Ren R, Yang L, et al. Sudden increase in human infection with avian influenza A(H7N9) virus in China, September-December 2016. Western Pac Surveill Response J. 2017;8(1):6–14.
  • Li Q, Zhou L, Zhou M, et al. Epidemiology of human infections with avian influenza A(H7N9) virus in China. N Engl J Med. 2014;370(6):520–532.
  • Su S, Gu M, Liu D, et al. Epidemiology, Evolution, and Pathogenesis of H7N9 Influenza Viruses in Five Epidemic Waves since 2013 in China. Trends Microbiol. 2017;25(9):713–728.
  • Shen Y, Lu H, Qi T, et al. Fatal cases of human infection with avian influenza A (H7N9) virus in Shanghai, China in 2013. Biosci Trends. 2015;9(1):73–78.
  • Shanghai Municipal Commission of Health and Family Planning. [Prevention and control measures of Human infection with H7N9 influenza virus in Shanghai municipality]. Available from: http://www.wsjsw.gov.cn/xwfb/20180525/35470.html. Accessed November 13, 2018. Chinese.
  • Kim SM, Kim YI, Pascua PN, Choi YK. Avian Influenza A Viruses: Evolution and Zoonotic Infection. Semin Respir Crit Care Med. 2016; 37(4):501–511.
  • He Y, Liu P, Tang S, et al. Live poultry market closure and control of avian influenza A(H7N9), Shanghai, China. Emerg Infect Dis. 2014;20(9):1565–1566.
  • Shanghai Municipal Agricultural Commission. Information abstract (internal data). Shanghai Agricul Netw. 2013;303(7):1–8.
  • The Central People’s Government of the People’s Republic of China. [Shanghai’s response to the H7N9 epidemic is worthy of recognition]; 2013. Available from: http://www.gov.cn/jrzg/2013-04/23/content_2386475.htm. Accessed November 13, 2018. Chinese.