The blood transcriptional signature for active and latent tuberculosis

References

• MjidMCherifJBen SalahNEpidemiology of tuberculosisRev Pneumol Clin2015712–36772 French25131367
   PubMed Web of Science ®Google Scholar
• SubbianSPandeyRSoteropoulosPRodriguezGMVaccination with an attenuated ferritin mutant protects mice against virulent Mycobacterium tuberculosisJ Immunol Res20152015112
   Web of Science ®Google Scholar
• SubbianSBandyopadhyayNTsenovaLEarly innate immunity determines outcome of Mycobacterium tuberculosis pulmonary infection in rabbitsCell Commun Signal20131116023958185
   PubMed Web of Science ®Google Scholar
• CheeCBSesterMZhangWLangeCDiagnosis and treatment of latent infection with Mycobacterium tuberculosisRespirology201318220521623107218
   PubMed Web of Science ®Google Scholar
• Hernandez-PandoROrozcoHAguilarDFactors that deregulate the protective immune response in tuberculosisArch Immunol Ther Exp (Warsz)200957535536719707720
   PubMed Web of Science ®Google Scholar
• MuñozLStaggHRAbubakarIDiagnosis and management of latent tuberculosis infectionCold Spring Harb Perspect Med2015511a01783026054858
   PubMed Web of Science ®Google Scholar
• SalgamePGeadasCCollinsLJones-LópezEEllnerJJLatent tuberculosis infection—revisiting and revising conceptsTuberculosis (Edinb)201595437338426038289
   PubMed Web of Science ®Google Scholar
• O’GarraARedfordPSMcNabFWBloomCIWilkinsonRJBerryMPThe immune response in tuberculosisAnnu Rev Immunol201331147552723516984
   PubMed Web of Science ®Google Scholar
• UlrichsTKaufmannSHNew insights into the function of granulomas in human tuberculosisJ Pathol2006208226126916362982
   PubMed Web of Science ®Google Scholar
• SaundersBMCooperAMRestraining mycobacteria: role of granulomas in mycobacterial infectionsImmunol Cell Biol200078433434110947857
   PubMed Web of Science ®Google Scholar
• LillebaekTDirksenABaessIStrungeBThomsenVØAndersenABMolecular evidence of endogenous reactivation of Mycobacterium tuberculosis after 33 years of latent infectionJ Infect Dis2002185340140411807725
   PubMed Web of Science ®Google Scholar
• EsmailHBarryCEWilkinsonRJUnderstanding latent tuberculosis: the key to improved diagnostic and novel treatment strategiesDrug Discov Today2012179–1051452122198298
   PubMed Web of Science ®Google Scholar
• ThillaiMPollockKPareekMLalvaniAInterferon-gamma release assays for tuberculosis: current and future applicationsExpert Rev Respir Med201481677824308653
   PubMed Web of Science ®Google Scholar
• CookeGSHillAVGenetics of susceptibility to human infectious diseaseNat Rev Genet200121296797711733749
   PubMed Web of Science ®Google Scholar
• AroraGMisraRSajidAModel systems for pulmonary infectious diseases: paradigms of anthrax and tuberculosisCurr Top Med Chem201717182077209928137237
   PubMed Web of Science ®Google Scholar
• BerryMPGrahamCMMcNabFWAn interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosisNature2010466730997397720725040
   PubMed Web of Science ®Google Scholar
• PengHLongFDingCFeature selection based on mutual information criteria of max-dependency, max-relevance, and min-redundancyIEEE Trans Pattern Anal Mach Intell20052781226123816119262
   PubMed Web of Science ®Google Scholar
• LiJHuangTPredicting and analyzing early wake-up associated gene expressions by integrating GWAS and eQTL studiesBiochim Biophys Acta Mol Basis Dis201818646 Pt B2241224629109033
   PubMed Web of Science ®Google Scholar
• CaiLHuangTSuJImplications of newly identified brain eQTL genes and their interactors in schizophreniaMol Ther Nucleic Acids20181243344230195780
   PubMedGoogle Scholar
• ChenLPanXHuXGene expression differences among different MSI statuses in colorectal cancerInt J Cancer Epub2018426
   Web of Science ®Google Scholar
• ZhangNHuangTCaiYDDiscriminating between deleterious and neutral non-frameshifting indels based on protein interaction networks and hybrid propertiesMol Genet Genomics2015290134335225248637
   PubMed Web of Science ®Google Scholar
• ShuYZhangNKongXHuangTCaiY-DPredicting A-to-I RNA editing by feature selection and random forestPLoS One2014910e11060725338210
   PubMed Web of Science ®Google Scholar
• LiBQYouJHuangTCaiYDClassification of non-small cell lung cancer based on copy number alterationsPLoS One201492e8830024505469
   PubMed Web of Science ®Google Scholar
• JiangYHuangTChenLGaoY-FCaiYChouK-CSignal propagation in protein interaction network during colorectal cancer progressionBioMed Res Int20132013119
   Google Scholar
• ZhangPWChenLHuangTZhangNKongXYCaiYDClassifying ten types of major cancers based on reverse phase protein array profilesPLoS One2015103e012314725822500
   PubMed Web of Science ®Google Scholar
• HuangTShuYCaiYDGenetic differences among ethnic groupsBMC Genomics2015161109326690364
   PubMed Web of Science ®Google Scholar
• ChenLLiJZhangYHIdentification of gene expression signatures across different types of neural stem cells with the Monte-Carlo feature selection methodJ Cell Biochem201811943394340329130544
   PubMed Web of Science ®Google Scholar
• EtnaMPGiacominiESeveraMCocciaEMPro- and anti-inflammatory cytokines in tuberculosis: a two-edged sword in TB pathogenesisSemin Immunol201426654355125453229
   PubMed Web of Science ®Google Scholar
• Mayer-BarberKDSherACytokine and lipid mediator networks in tuberculosisImmunol Rev2015264126427525703565
   PubMed Web of Science ®Google Scholar
• LauYLChanGCHaSYHuiYFYuenKYThe role of phagocytic respiratory burst in host defense against Mycobacterium tuberculosisClin Infect Dis19982612262279455564
   PubMed Web of Science ®Google Scholar
• SunYPCaiQSVitamin D receptor FokI gene polymorphism and tuberculosis susceptibility: a meta-analysisGenet Mol Res20151426156616326125816
   PubMed Web of Science ®Google Scholar
• KhanTAKalsoomKIqbalAA novel missense mutation in the NADPH binding domain of CYBB abolishes the NADPH oxidase activity in a male patient with increased susceptibility to infectionsMicrob Pathog201610016316927666509
   PubMed Web of Science ®Google Scholar
• BustamanteJAriasAAVogtGGermline CYBB mutations that selectively affect macrophages in kindreds with X-linked predisposition to tuberculous mycobacterial diseaseNat Immunol201112321322121278736
   PubMed Web of Science ®Google Scholar
• BareseCCopelliSZandomeniROleastroMZelazkoMRivasEMX-linked chronic granulomatous disease: first report of mutations in patients of ArgentinaJ Pediatr Hematol/Oncol20042610656660
   Web of Science ®Google Scholar
• IshibashiFMizukamiTKanegasakiSImproved superoxide-generating ability by interferon gamma due to splicing pattern change of transcripts in neutrophils from patients with a splice site mutation in CYBB geneBlood200198243644111435314
   PubMed Web of Science ®Google Scholar
• LiuQWangJSandfordAJAssociation of CYBB polymorphisms with tuberculosis susceptibility in the Chinese Han populationInfect Genet Evol20153316917525929165
   PubMed Web of Science ®Google Scholar
• RupprechtRPapadopoulosVRammesGTranslocator protein (18 kDa) (TSPO) as a therapeutic target for neurological and psychiatric disordersNat Rev Drug Discov201091297198821119734
   PubMed Web of Science ®Google Scholar
• ZavalaFHaumontJLenfantMInteraction of benzodiazepines with mouse macrophagesEur J Pharmacol198410635615666151510
   PubMed Web of Science ®Google Scholar
• FossCAHarperJSWangHPomperMGJainSKNoninvasive molecular imaging of tuberculosis-associated inflammation with radioiodinated DPA-713J Infect Dis2013208122067207423901092
   PubMed Web of Science ®Google Scholar
• TuckerEWPokkaliSZhangZMicroglia activation in a pediatric rabbit model of tuberculous meningitisDis Model Mech20169121497150627935825
   PubMed Web of Science ®Google Scholar
• ParkYMCD36, a scavenger receptor implicated in atherosclerosisExp Mol Med2014466e9924903227
   PubMed Web of Science ®Google Scholar
• FebbraioMHajjarDPSilversteinRLCD36: a class B scavenger receptor involved in angiogenesis, atherosclerosis, inflammation, and lipid metabolismJ Clin Invest2001108678579111560944
   PubMed Web of Science ®Google Scholar
• DoddCEPyleCJGlowinskiRRajaramMVSchlesingerLSCD36-mediated uptake of surfactant lipids by human macrophages promotes intracellular growth of Mycobacterium tuberculosisJ Immunol2016197124727473527913648
   PubMed Web of Science ®Google Scholar
• LaoWKangHJinGEvaluation of the relationship between MARCO and CD36 single-nucleotide polymorphisms and susceptibility to pulmonary tuberculosis in a Chinese Han populationBMC Infect Dis201717148828693442
   PubMed Web of Science ®Google Scholar
• HawkesMLiXCrockettMCD36 deficiency attenuates experimental mycobacterial infectionBMC Infect Dis201010129920950462
   PubMed Web of Science ®Google Scholar
• MerazMAWhiteJMSheehanKCTargeted disruption of the STAT1 gene in mice reveals unexpected physiologic specificity in the JAK-STAT signaling pathwayCell19968434314428608597
   PubMed Web of Science ®Google Scholar
• DurbinJEHackenmillerRSimonMCLevyDETargeted disruption of the mouse STAT1 gene results in compromised innate immunity to viral diseaseCell19968434434508608598
   PubMed Web of Science ®Google Scholar
• FlynnJLChanJTrieboldKJDaltonDKStewartTABloomBRAn essential role for interferon gamma in resistance to Mycobacterium tuberculosis infectionJ Exp Med19931786224922547504064
   PubMed Web of Science ®Google Scholar
• TingLMKimACCattamanchiAAErnstJDMycobacterium tuberculosis inhibits IFN-gamma transcriptional responses without inhibiting activation of STAT1J Immunol199916373898390610490990
   PubMed Web of Science ®Google Scholar
• Esquivel-SolísHQuiñones-FalconiFZarain-HerzbergAAmieva-FernándezRILópez-VidalYImpaired activation of STAT1 and c-Jun as a possible defect in macrophages of patients with active tuberculosisClin Exp Immunol20091581455419737230
   PubMed Web of Science ®Google Scholar
• SugawaraIYamadaHMizunoSSTAT1 knockout mice are highly susceptible to pulmonary mycobacterial infectionTohoku J Exp Med20042021415014738323
   PubMed Web of Science ®Google Scholar
• MarakalalaMJRajuRMSharmaKInflammatory signaling in human tuberculosis granulomas is spatially organizedNat Med201622553153827043495
   PubMed Web of Science ®Google Scholar