Low prevalence of resistance genes in sheltered homeless population in Marseille, France, 2014–2018

References

• Wrezel O. Respiratory infections in the homeless. UWO Med J. 2009;2(78):5.
   Google Scholar
• Faustini A, Hall AJ, Perucci CA. Factors for multidrug resistant tuberculosis in Europe: a systematic review. Thorax. 2006;61(2):158–163. doi:10.1136/thx.2005.04596316254056
   PubMed Web of Science ®Google Scholar
• Ottomeyer M, Graham CD, Legg AD, et al. Prevalence of nasal colonization by methicillin-resistant Staphylococcus aureus in persons using a homeless shelter in Kansas City. Front Public Health. 2016;(4):234.27826546
   PubMed Web of Science ®Google Scholar
• Leibler JH, León C, Cardoso LJP, et al. Prevalence and risk factors for MRSA nasal colonization among persons experiencing homelessness in Boston, MA. J Med Microbiol. 2017;66:1183–1188. doi:10.1099/jmm.0.000552
   PubMed Web of Science ®Google Scholar
• Ruhe JJ, Myers L, Mushatt D, Hasbun R. High‐level penicillin‐non-susceptible Streptococcus pneumoniae bacteremia: identification of a low‐risk subgroup. Clin Infect Dis. 2004;38:508–514. doi:10.1086/38119714765343
   PubMed Web of Science ®Google Scholar
• Munita JM, Arias CA. Mechanisms of antibiotic resistance. Microbiol Spectr. 2016;4:2.
   Web of Science ®Google Scholar
• van Hoek AH, Mevius D, Guerra B, Mullany P, Roberts AP, Aarts HJM. Acquired antibiotic resistance genes: an overview. Front Microbiol. 2011;2:203. doi:10.3389/fmicb.2011.0021522046172
   PubMed Web of Science ®Google Scholar
• Antunes NT, Lamoureaux TL, Toth M, et al. Class D β-lactamases: are they all carbapenemases? Antimicrob Agents Chemother. 2014;58(4):2119–2125. doi:10.1128/AAC.02045-1224468778
   PubMed Web of Science ®Google Scholar
• Kuo SC, Lee YT, Yang SP, et al.Eradication of multidrug-resistant Acinetobacter baumannii from the respiratory tract with inhaled colistin methanesulfonate: a matched case-control study. Clin Microbiol Infect. 2012;(18):870–876. doi:10.1111/j.1469-0691.2011.03682.x21999321
   PubMed Web of Science ®Google Scholar
• Hartzell JD, Kim AS, Kortepeter MG, et al. Acinetobacter pneumonia: a review. Med Gen Med. 2007;9:4.
   Google Scholar
• Hadjadj L, Riziki T, Zhu Y, Li J, Diene S, Rolain J-M. Study of mcr-1 Gene-mediated colistin resistance in Enterobacteriaceae isolated from humans and animals in different countries. Genes. 2017;8:394. doi:10.3390/genes8120394
   Web of Science ®Google Scholar
• Leangapichart T, Tissot-Dupont H, Raoult D, et al. Risk factors for acquisition of CTX-M genes in pilgrims during Hajj 2013 and 2014. J Antimicrob Chemother. 2017;72(9):2627–2635. doi:10.1093/jac/dkx06628549141
   PubMed Web of Science ®Google Scholar
• Bataille J, Brouqui P. Building an intelligent hospital to fight contagion. Clin Infect Dis. 2017;65(Suppl1):S4–S11. doi:10.1093/cid/cix47428859348
   PubMed Web of Science ®Google Scholar
• Brouqui P, Boudjema S, Soto Aladro A, et al. New approaches to prevent healthcare-associated infection. Clin Infect Dis. 2017;65(Suppl1):S50–S54. doi:10.1093/cid/cix47428859352
   PubMed Web of Science ®Google Scholar
• Edouard S, Prudent E, Gautret P, Memish ZA, Raoult D, Patel R. Cost-effective pooling of DNA from nasopharyngeal swab samples for large-scale detection of bacteria by real-time PCR. J Clin Microbiol. 2015;53:1002–1004. doi:10.1128/JCM.03609-1425552360
   PubMed Web of Science ®Google Scholar
• Sow D, Parola P, Sylla K, et al. Performance of real-time polymerase chain reaction assays for the detection of 20 gastrointestinal parasites in clinical samples from Senegal. Am J Trop Med Hyg. 2017;97:173–182. doi:10.4269/ajtmh.16-078128719290
   PubMed Web of Science ®Google Scholar
• Leangapichart T, Dia NM, Olaitan AO, Gautret P, Brouqui P, Rolain J-M. Acquisition of extended-spectrum β-lactamases by Escherichia coli and Klebsiella pneumoniae in gut microbiota of Pilgrims during the Hajj Pilgrimage of 2013. Antimicrob Agents Chemother. 2016;60:3222–3226. doi:10.1128/AAC.02396-1526976866
   PubMed Web of Science ®Google Scholar
• Leangapichart T, Gautret P, Griffiths K, et al. Acquisition of a high diversity of bacteria during the Hajj Pilgrimage, including Acinetobacter baumannii with blaOXA-72 and Escherichia coli with blaNDM-5 Carbapenemase Genes. Antimicrob Agents Chemother. 2016;60(10):5942–5948. doi:10.1128/AAC.00669-1627458222
   PubMedGoogle Scholar
• Gupta SK, Padmanabhan BR, Diene SM, et al. ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes. Antimicrob Agents Chemother. 2014;58:212–220. doi:10.1128/AAC.02045-1224145532
   PubMed Web of Science ®Google Scholar
• Assistance Publique Hôpitaux de Marseille. Investigation of endemic and emerging diseases in populations of homeless households in Marseille. Available from: https://clinicaltrials.gov/ct2/show/results/NCT2819128. Accessed January 1, 2019.
   Google Scholar
• Collins SE, Orfaly VE, Wu T, et al. Content analysis of homeless smokers’ perspectives on established and alternative smoking interventions. Int J Drug Policy. 2018;51:10–17. doi:10.1016/j.drugpo.2017.09.00729144995
   PubMed Web of Science ®Google Scholar
• van Laere I, de Wit M, Klazinga N. Shelter-based convalescence for homeless adults in Amsterdam: a descriptive study. BMC Health Serv Res. 2009;18:208. doi:10.1186/1472-6963-9-208
   Web of Science ®Google Scholar
• De Maio G, Van Den Bergh R, Garelli S, et al. Reaching out to the forgotten: providing access to medical care for the homeless in Italy. Int Health. 2014;6:93–98. doi:10.1093/inthealth/ihu00224505079
   PubMed Web of Science ®Google Scholar
• OCDE Données. Taux de vaccination contre la grippe. Available from: https://data.oecd.org/fr/healthcare/taux-de-vaccination-contre-la-grippe.htm. Accessed 305, 2019.
   Google Scholar
• Brook I, Gober AE. Recovery of potential pathogens and interfering bacteria in the nasopharynx of smokers and non-smokers. Chest. 2005;127:2072–2075. doi:10.1378/chest.127.2.63015947322
   PubMed Web of Science ®Google Scholar
• The lactamase engineering database. Available from: http://www.laced.uni-stuttgart.de/. Accessed 305, 2019.
   Google Scholar
• Tristram S, Jacobs MR, Appelbaum PC. Antimicrobial resistance in Haemophilus influenzae. Clin Microbiol Rev. 2007;20:368–389. doi:10.1128/CMR.00040-0617428889
   PubMed Web of Science ®Google Scholar
• Ly TDA, Edouard S, Badiaga S, et al. Epidemiology of respiratory pathogen carriage in the homeless population within two shelters in Marseille, France, 2015–2017: cross sectional 1-day surveys. Clin Microbiol Infect. 2019;25(2):e1–249.e6. doi:10.1016/j.cmi.2018.04.032
   Web of Science ®Google Scholar
• Liakopoulos A, Mevius D, Ceccarelli D. A review of SHV extended-spectrum β-lactamases: neglected yet ubiquitous. Front Microbiol. 2016;7:1374. doi:10.3389/fmicb.2016.0137427656166
   PubMed Web of Science ®Google Scholar
• Heritage J, M’Zali FH, Gascoyne-Binzi D, Hawkey PM. Evolution and spread of SHV extended-spectrum β-lactamases in Gram-negative bacteria. J Antimicrob Chemother. 1999;44:309–318. doi:10.1093/jac/44.3.30910511397
   PubMed Web of Science ®Google Scholar
• Liu YY, Wang Y, Walsh TR, et al. Emergence of plasmid-mediated colistin resistance mechanism mcr-1 in animals and human beings in China: a microbiological and molecular biological study. Lancet Infect Dis. 2016;16:161–168. doi:10.1016/S1473-3099(16)30197-926603172
   PubMed Web of Science ®Google Scholar
• Wang R, van Dorp L, Shaw LP, et al. The global distribution and spread of the mobilized colistin resistance gene mcr-1. Nat Commun. 2018;9(1):1179. doi:10.1038/s41467-018-03205-z29563494
   PubMed Web of Science ®Google Scholar
• Rolain J-M, Kempf M, Leangapichart T, et al. Plasmid-mediated mcr-1 gene in colistin-resistant clinical isolates of Klebsiella pneumoniae in France and Laos. Antimicrob Agents Chemother. 2016;60:6994–6995. doi:10.1128/AAC.00960-1627572402
   PubMed Web of Science ®Google Scholar
• Poirel L, Jayol A, Nordmann P. Polymyxins: antibacterial activity, susceptibility testing, and resistance mechanisms encoded by plasmids or chromosomes. Clin Microbiol Rev. 2017;30:557–596. doi:10.1128/CMR.00064-1628275006
   PubMed Web of Science ®Google Scholar
• Beyrouthy R, Robin F, Lessene A, et al. MCR-1 and OXA-48 in vivo acquisition in KPC-producing Escherichia coli after colistin treatment. Antimicrob Agents Chemother. 2017;61(8):e02540–16. doi:10.1128/AAC.02540-1628507112
   PubMed Web of Science ®Google Scholar
• Baron S, Bardet L, Dubourg G, et al. MCR-1 plasmid-mediated colistin resistance gene detection in an Enterobacter cloacae clinical isolate in France. J Glob Antimicrob Resist. 2017;10:35–36. doi:10.1016/j.jgar.2017.05.00428576739
   PubMed Web of Science ®Google Scholar
• Birgy A, Madhi F, Hogan J, et al. CTX-M-55, MCR-1 and FosA-producing multidrug-resistant Escherichia coli infection in a child in France. Antimicrob Agents Chemother. 2018;62(4):e00127–18. doi:10.1128/AAC.00127-1829378715
   PubMed Web of Science ®Google Scholar