Current and Future Perspectives on Isothermal Nucleic Acid Amplification Technologies for Diagnosing Infections

References

• Tenover FC. The role for rapid molecular diagnostic tests for infectious diseases in precision medicine. Expert Rev Precis Med Drug Dev. 2018;3(1):69–77.
   Web of Science ®Google Scholar
• Al-Mulla NA, Taj-Aldeen SJ, El Shafie S, Janahi M, Al-Nasser AA, Chandra P. Bacterial bloodstream infections and antimicrobial susceptibility pattern in pediatric hematology/oncology patients after anticancer chemotherapy. Infect Drug Resist. 2014;7:289–299. doi:10.2147/IDR.S7048625395866
   PubMed Web of Science ®Google Scholar
• Saker L, Lee K, Cannito B, Gilmore A, Campbell-Lendrum D Globalization and infectious diseases; a review of the linkages. Special Topics No 3 UNICEF/UNDP/World Bank/WHO. 2004:1–67.
   Google Scholar
• Cheng Y-H, Lin Y-J, Chen S-C, et al. Assessing health burden risk and control effect on dengue fever infection in the southern region of Taiwan. Infect Drug Resist. 2018;11:1423–1435. doi:10.2147/IDR.S16982030233221
   PubMed Web of Science ®Google Scholar
• Caliendo AM, Gilbert DN, Ginocchio CC, et al. Better tests, better care: improved diagnostics for infectious diseases. Clin Infect Dis. 2013;57 Suppl 3:S139–170. doi:10.1093/cid/cit57824200831
   PubMed Web of Science ®Google Scholar
• Lu TC, Tsai CL, Lee CC, et al. Preventable deaths in patients admitted from emergency department. Emerg Med J. 2006;23(6):452–455. doi:10.1136/emj.2004.02231916714507
   PubMed Web of Science ®Google Scholar
• Abe T, Tokuda Y, Shiraishi A, et al. In-hospital mortality associated with the misdiagnosis or unidentified site of infection at admission. Crit Care. 2019;23(1):202.31171006
   PubMed Web of Science ®Google Scholar
• Ahmad RA, Mahendradhata Y, Utarini A, de Vlas SJ. Diagnostic delay amongst tuberculosis patients in Jogjakarta Province, Indonesia is related to the quality of services in DOTS facilities. Trop Med Int Health. 2011;16(4):412–423. doi:10.1111/tmi.2011.16.issue-421199195
   PubMed Web of Science ®Google Scholar
• Bojovic O, Medenica M, Zivkovic D, et al. Factors associated with patient and health system delays in diagnosis and treatment of tuberculosis in Montenegro, 2015-2016. PLoS One. 2018;13(3):e0193997. doi:10.1371/journal.pone.019399729522545
   PubMed Web of Science ®Google Scholar
• Frenz MB, McIntyre AS. Reducing delays in the diagnosis and treatment of Clostridium difficile diarrhoea. QJM. 2003;96(8):579–582. doi:10.1093/qjmed/hcg09812897343
   PubMed Web of Science ®Google Scholar
• Elshafie S, Taj-Aldeen SJ. Emerging resistant serotypes of invasive Streptococcus pneumoniae. Infect Drug Resist. 2016;9:153–160. doi:10.2147/IDR.S10241027418844
   PubMed Web of Science ®Google Scholar
• Hersh AL, Shapiro DJ, Pavia AT, Shah SS. Antibiotic prescribing in ambulatory pediatrics in the United States. Pediatrics. 2011;128(6):1053–1061.22065263
   PubMed Web of Science ®Google Scholar
• Grijalva CG, Nuorti JP, Griffin MR. Antibiotic prescription rates for acute respiratory tract infections in US ambulatory settings. JAMA. 2009;302(7):758–766. doi:10.1001/jama.2009.116319690308
   PubMed Web of Science ®Google Scholar
• Roumie CL, Halasa NB, Grijalva CG, et al. Trends in antibiotic prescribing for adults in the United States–1995 to 2002. J Gen Intern Med. 2005;20(8):697–702. doi:10.1111/j.1525-1497.2005.0148.x16050877
   PubMed Web of Science ®Google Scholar
• Soo PC, Tseng CC, Ling SR, et al. Rapid and sensitive detection of Acinetobacter baumannii using loop-mediated isothermal amplification. J Microbiol Methods. 2013;92(2):197–200. doi:10.1016/j.mimet.2012.11.02023220188
   PubMed Web of Science ®Google Scholar
• Notomi T, Okayama H, Masubuchi H, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28(12):E63–E63. doi:10.1093/nar/28.12.e6310871386
   PubMed Web of Science ®Google Scholar
• Notomi T, Mori Y, Tomita N, Kanda H. Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects. J Microbiol. 2015;53(1):1–5. doi:10.1007/s12275-015-4656-925557475
   PubMed Web of Science ®Google Scholar
• Li J, Macdonald J, von Stetten F. Review: a comprehensive summary of a decade development of the recombinase polymerase amplification. Analyst. 2019;144(1):31–67.
   Web of Science ®Google Scholar
• Dhama K, Karthik K, Chakrabort S, et al. Loop-mediated isothermal amplification of DNA (LAMP): a new diagnostic tool lights the world of diagnosis of animal and human pathogens: a review. Pak J Biol Sci. 2014;17(2):151–166. doi:10.3923/pjbs.2014.151.16624783797
   PubMedGoogle Scholar
• Black EM, Lowings JP, Smith J, Heaton PR, McElhinney LM. A rapid RT-PCR method to differentiate six established genotypes of rabies and rabies-related viruses using TaqMan™ technology. J Virol Methods. 2002;105(1):25–35. doi:10.1016/S0166-0934(02)00062-912176139
   PubMed Web of Science ®Google Scholar
• Parida M, Sannarangaiah S, Dash PK, Rao PV, Morita K. Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Rev Med Virol. 2008;18(6):407–421. doi:10.1002/rmv.v18:618716992
   PubMed Web of Science ®Google Scholar
• Compton J. Nucleic acid sequence-based amplification. Nature. 1991;350:91. doi:10.1038/350091a01706072
   PubMed Web of Science ®Google Scholar
• Wharam SD, Marsh P, Lloyd JS, et al. Specific detection of DNA and RNA targets using a novel isothermal nucleic acid amplification assay based on the formation of a three-way junction structure. Nucleic Acids Res. 2001;29(11):e54–e54. doi:10.1093/nar/29.11.e5411376166
   PubMedGoogle Scholar
• Walker GT, Fraiser MS, Schram JL, Little MC, Nadeau JG, Malinowski DP. Strand displacement amplification—an isothermal, in vitro DNA amplification technique. Nucleic Acids Res. 1992;20(7):1691–1696. doi:10.1093/nar/20.7.16911579461
   PubMed Web of Science ®Google Scholar
• Wang Y, Wang Y, Ma A-J, et al. Rapid and sensitive isothermal detection of nucleic-acid sequence by multiple cross displacement amplification. Sci Rep. 2015;5:11902. doi:10.1038/srep1190226154567
   PubMed Web of Science ®Google Scholar
• Barreda-García S, Miranda-Castro R, de-los-Santos-Álvarez N, Miranda-Ordieres AJ, Lobo-Castañón MJ. Helicase-dependent isothermal amplification: a novel tool in the development of molecular-based analytical systems for rapid pathogen detection. Anal Bioanal Chem. 2018;410(3):679–693. doi:10.1007/s00216-017-0620-328932883
   PubMed Web of Science ®Google Scholar
• Nurul Najian AB, Engku Nur Syafirah EA, Ismail N, Mohamed M, Yean CY. Development of multiplex loop mediated isothermal amplification (m-LAMP) label-based gold nanoparticles lateral flow dipstick biosensor for detection of pathogenic Leptospira. Anal Chim Acta. 2016;903:142–148. doi:10.1016/j.aca.2015.11.01526709307
   PubMed Web of Science ®Google Scholar
• Mori Y, Kitao M, Tomita N, Notomi T. Real-time turbidimetry of LAMP reaction for quantifying template DNA. J Biochem Biophys Methods. 2004;59(2):145–157. doi:10.1016/j.jbbm.2003.12.00515163526
   PubMedGoogle Scholar
• Tomita N, Mori Y, Kanda H, Notomi T. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc. 2008;3(5):877–882. doi:10.1038/nprot.2008.5718451795
   PubMed Web of Science ®Google Scholar
• Mori Y, Nagamine K, Tomita N, Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem Biophys Res Commun. 2001;289(1):150–154. doi:10.1006/bbrc.2001.592111708792
   PubMed Web of Science ®Google Scholar
• Abdullah J, Saffie N, Sjasri FAR, et al. Rapid detection of Salmonella Typhi by loop-mediated isothermal amplification (LAMP) method. Braz J Microbiol. 2014;45(4):1385–1391. doi:10.1590/S1517-8382201400040003225763045
   PubMed Web of Science ®Google Scholar
• Solanki R, Vanjari L, Ede N, Gungi A, Soory A, Vemu L. Evaluation of LAMP assay using phenotypic tests and conventional PCR for detection of blaNDM-1 and blaKPC genes among carbapenem-resistant clinical Gram-negative isolates. J Med Microbiol. 2013;62(Pt 10):1540–1544. doi:10.1099/jmm.0.059907-023800599
   PubMed Web of Science ®Google Scholar
• Stratakos AC, Linton M, Millington S, Grant IR. A loop-mediated isothermal amplification method for rapid direct detection and differentiation of nonpathogenic and verocytotoxigenic Escherichia coli in beef and bovine faeces. J Appl Microbiol. 2017;122(3):817–828. doi:10.1111/jam.2017.122.issue-327992094
   PubMed Web of Science ®Google Scholar
• Iwamoto T, Sonobe T, Hayashi K. Loop-mediated isothermal amplification for direct detection of mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol. 2003;41(6):2616–2622. doi:10.1128/JCM.41.6.2616-2622.200312791888
   PubMed Web of Science ®Google Scholar
• Liu N, Zou D, Dong D, et al. Development of a multiplex loop-mediated isothermal amplification method for the simultaneous detection of Salmonella spp. and Vibrio parahaemolyticus. Sci Rep. 2017;7:45601. doi:10.1038/srep4560128349967
   PubMed Web of Science ®Google Scholar
• Wang Q, Zhou Y, Li S, et al. Real-time fluorescence loop mediated isothermal amplification for the detection of Acinetobacter baumannii. PLoS One. 2013;8(7):e66406. doi:10.1371/journal.pone.006640623843955
   PubMed Web of Science ®Google Scholar
• Hamzan NI, Fauzi FH, Taib H, Mohamad S. Simple and rapid detection of Porphyromonas gingivalis and Aggregatibacter actinomycetemcomitans by loop-mediated isothermal amplification assay. Bangladesh J Med Sci. 2018;17:3. doi:10.3329/bjms.v17i3.36995
   Web of Science ®Google Scholar
• Kasahara K, Ishikawa H, Sato S, Shimakawa Y, Watanabe K. Development of multiplex loop-mediated isothermal amplification assays to detect medically important yeasts in dairy products. FEMS Microbiol Lett. 2014;357(2):208–216. doi:10.1111/1574-6968.1251224965944
   PubMed Web of Science ®Google Scholar
• Mahony J, Chong S, Bulir D, Ruyter A, Mwawasi K, Waltho D. Multiplex loop-mediated isothermal amplification (M-LAMP) assay for the detection of influenza A/H1, A/H3 and influenza B can provide a specimen-to-result diagnosis in 40 min with single genome copy sensitivity. J Clin Virol. 2013;58(1):127–131. doi:10.1016/j.jcv.2013.06.00623827787
   PubMed Web of Science ®Google Scholar
• Lucchi NW, Demas A, Narayanan J, et al. Real-time fluorescence loop mediated isothermal amplification for the diagnosis of malaria. PLoS One. 2010;5(10):e13733.21060829
   PubMed Web of Science ®Google Scholar
• Hara-Kudo Y, Yoshino M, Kojima T, Ikedo M. Loop-mediated isothermal amplification for the rapid detection of Salmonella. FEMS Microbiol Lett. 2005;253(1):155–161. doi:10.1016/j.femsle.2005.09.03216242860
   PubMed Web of Science ®Google Scholar
• Ohtsuka K, Yanagawa K, Takatori K, Hara-Kudo Y. Detection of Salmonella enterica in naturally contaminated liquid eggs by loop-mediated isothermal amplification, and characterization of Salmonella isolates. Appl Environ Microbiol. 2005;71(11):6730. doi:10.1128/AEM.71.11.6730-6735.200516269703
   PubMed Web of Science ®Google Scholar
• Okamura M, Ohba Y, Kikuchi S, et al. Loop-mediated isothermal amplification for the rapid, sensitive, and specific detection of the O9 group of Salmonella in chickens. Vet Microbiol. 2008;132(1):197–204. doi:10.1016/j.vetmic.2008.04.02918538511
   PubMed Web of Science ®Google Scholar
• Hara-Kudo Y, Konishi N, Ohtsuka K, et al. Detection of Verotoxigenic Escherichia coli O157 and O26 in food by plating methods and LAMP method: a collaborative study. Int J Food Microbiol. 2008;122(1–2):156–161. doi:10.1016/j.ijfoodmicro.2007.11.07818158196
   PubMed Web of Science ®Google Scholar
• Yano A, Ishimaru R, Hujikata R. Rapid and sensitive detection of heat-labile I and heat-stable I enterotoxin genes of enterotoxigenic Escherichia coli by loop-mediated isothermal amplification. J Microbiol Methods. 2007;68(2):414–420. doi:10.1016/j.mimet.2006.09.02417098313
   PubMed Web of Science ®Google Scholar
• Hill J, Beriwal S, Chandra I, et al. Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli. J Clin Microbiol. 2008;46(8):2800–2804. doi:10.1128/JCM.00152-0818550738
   PubMed Web of Science ®Google Scholar
• Yamazaki W, Taguchi M, Ishibashi M, et al. Development and evaluation of a loop-mediated isothermal amplification assay for rapid and simple detection of Campylobacter jejuni and Campylobacter coli. J Med Microbiol. 2008;57(4):444–451. doi:10.1099/jmm.0.47688-018349363
   PubMed Web of Science ®Google Scholar
• Lloyd A, Pasupuleti V, Thota P, et al. Accuracy of loop-mediated isothermal amplification for the diagnosis of Clostridium difficile infection: a systematic review. Diagn Microbiol Infect Dis. 2015;82(1):4–10. doi:10.1016/j.diagmicrobio.2015.02.00725752201
   PubMed Web of Science ®Google Scholar
• Massey V, Gregson DB, Chagla AH, Storey M, John MA, Hussain Z. Clinical usefulness of components of the Triage immunoassay, enzyme immunoassay for toxins A and B, and cytotoxin B tissue culture assay for the diagnosis of Clostridium difficile diarrhea. Am J Clin Pathol. 2003;119(1):45–49. doi:10.1309/U8ATL52Q60XYAVX612520696
   PubMed Web of Science ®Google Scholar
• Poutanen SM, Simor AE. Clostridium difficile-associated diarrhea in adults. CMAJ. 2004;171(1):51–58. doi:10.1503/cmaj.103118915238498
   PubMed Web of Science ®Google Scholar
• Hataoka Y, Zhang L, Mori Y, Tomita N, Notomi T, Baba Y. Analysis of specific gene by integration of isothermal amplification and electrophoresis on poly(methyl methacrylate) microchips. Anal Chem. 2004;76(13):3689–3693. doi:10.1021/ac035032u15228342
   PubMed Web of Science ®Google Scholar
• Mori Y, Notomi T. Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J Infect Chemother. 2009;15(2):62–69. doi:10.1007/s10156-009-0669-919396514
   PubMed Web of Science ®Google Scholar
• Hsieh K, Mage PL, Csordas AT, Eisenstein M, Soh HT. Simultaneous elimination of carryover contamination and detection of DNA with uracil-DNA-glycosylase-supplemented loop-mediated isothermal amplification (UDG-LAMP). Chem Commun (Camb). 2014;50(28):3747–3749. doi:10.1039/c4cc00540f24577617
   PubMed Web of Science ®Google Scholar
• Wong YP, Othman S, Lau YL, Radu S, Chee HY. Loop-mediated isothermal amplification (LAMP): a versatile technique for detection of micro-organisms. J Appl Microbiol. 2018;124(3):626–643. doi:10.1111/jam.1364729165905
   PubMed Web of Science ®Google Scholar
• Watts MR, James G, Sultana Y, et al. A loop-mediated isothermal amplification (LAMP) assay for Strongyloides stercoralis in stool that uses a visual detection method with SYTO-82 fluorescent dye. Am J Trop Med Hyg. 2014;90(2):306–311. doi:10.4269/ajtmh.13-058324323513
   PubMed Web of Science ®Google Scholar
• Vincent M, Xu Y, Kong H. Helicase-dependent isothermal DNA amplification. EMBO Rep. 2004;5(8):795–800. doi:10.1038/sj.embor.740020015247927
   PubMed Web of Science ®Google Scholar
• Abdel-Monem M, Hoffmann-Berling H. Enzymic unwinding of DNA. Eur J Biochem. 1976;65(2):431–440. doi:10.1111/j.1432-1033.1976.tb10358.x133022
   PubMedGoogle Scholar
• Abdel-monem M, Dürwald H, Hoffmann-Berling H. Enzymic Unwinding of DNA. Eur J Biochem. 1976;65(2):441–449. doi:10.1111/j.1432-1033.1976.tb10359.x133023
   PubMedGoogle Scholar
• Zanoli LM, Spoto G. Isothermal amplification methods for the detection of nucleic acids in microfluidic devices. Biosensors. 2012;3(1):18–43. doi:10.3390/bios301001825587397
   PubMedGoogle Scholar
• An L, Tang W, Ranalli TA, Kim H-J, Wytiaz J, Kong H. Characterization of a thermostable UvrD helicase and its participation in helicase-dependent amplification. J Biol Chem. 2005;280(32):28952–28958. doi:10.1074/jbc.M50309620015955821
   PubMed Web of Science ®Google Scholar
• Motré A, Li Y, Kong H. Enhancing helicase-dependent amplification by fusing the helicase with the DNA polymerase. Gene. 2008;420(1):17–22. doi:10.1016/j.gene.2008.04.01718556147
   PubMed Web of Science ®Google Scholar
• Goldmeyer J, Kong H, Tang W. Development of a novel one-tube isothermal reverse transcription thermophilic helicase-dependent amplification platform for rapid RNA detection. J Mol Diagn. 2007;9(5):639–644. doi:10.2353/jmoldx.2007.07001217975029
   PubMed Web of Science ®Google Scholar
• Andresen D, von Nickisch-rosenegk M, Bier FF. Helicase dependent OnChip-amplification and its use in multiplex pathogen detection. Clin Chim Acta. 2009;403(1):244–248.19302991
   PubMed Web of Science ®Google Scholar
• Huang S, Do J, Mahalanabis M, et al. Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis. PLoS One. 2013;8(3):e60059.23555883
   PubMed Web of Science ®Google Scholar
• Maffert P, Reverchon S, Nasser W, Rozand C, Abaibou H. New nucleic acid testing devices to diagnose infectious diseases in resource-limited settings. Eur J Clin Microbiol Infect Dis. 2017;36(10):1717–1731.28573472
   PubMed Web of Science ®Google Scholar
• Hall MJ, Wharam SD, Weston A, Cardy DLN, Wilson WH. Use of signal-mediated amplification of RNA technology (SMART) to detect marine cyanophage DNA. BioTechniques. 2002;32(3):604–611.11926174
   PubMed Web of Science ®Google Scholar
• Li J, Macdonald J. Advances in isothermal amplification: novel strategies inspired by biological processes. Biosens Bioelectron. 2015;64:196–211. doi:10.1016/j.bios.2014.08.06925218104
   PubMed Web of Science ®Google Scholar
• Wharam SD, Hall MJ, Wilson WH. Detection of virus mRNA within infected host cells using an isothermal nucleic acid amplification assay: marine cyanophage gene expression within Synechococcus sp. Virol J. 2007;4(1):52. doi:10.1186/1743-422X-4-5217553149
   PubMed Web of Science ®Google Scholar
• Levi K, Bailey C, Bennett A, Marsh P, Cardy DLN, Towner KJ. Evaluation of an isothermal signal amplification method for rapid detection of methicillin-resistant staphylococcus aureus from patient-screening swabs. J Clin Microbiol. 2003;41(7):3187.12843062
   PubMed Web of Science ®Google Scholar
• Yan L, Zhou J, Zheng Y, et al. Isothermal amplified detection of DNA and RNA. Mol Biosyst. 2014;10(5):970–1003. doi:10.1039/c3mb70304e24643211
   PubMed Web of Science ®Google Scholar
• Deiman B, Van Aarle P, Sillekens P. Characteristics and applications of Nucleic Acid Sequence-Based Amplification (NASBA). Appl Biochem Biotechnol Part B Mol Biotechnol. 2002;20(2):163–179.
   Google Scholar
• Gill P, Ghaemi A. Nucleic acid isothermal amplification technologies—a review. Nucleosides Nucleotides Nucleic Acids. 2008;27(3):224–243. doi:10.1080/1525777070184520418260008
   PubMed Web of Science ®Google Scholar
• Guatelli JC, Whitfield KM, Kwoh DY, Barringer KJ, Richman DD, Gingeras TR. Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. Proc Natl Acad Sci U S A. 1990;87:1874–1878. doi:10.1073/pnas.87.5.18742308948
   PubMed Web of Science ®Google Scholar
• Jean J, Blais B, Darveau A, Fliss I. Detection of hepatitis a virus by the nucleic acid sequence-based amplification technique and comparison with reverse transcription-PCR. Appl Environ Microbiol. 2001;67(12):5593. doi:10.1128/AEM.67.12.5593-5600.200111722911
   PubMed Web of Science ®Google Scholar
• Samuelson A, Westmoreland D, Eccles R, Fox JD. Development and application of a new method for amplification and detection of human rhinovirus RNA. J Virol Methods. 1998;71(2):197–209. doi:10.1016/S0166-0934(98)00006-89626953
   PubMed Web of Science ®Google Scholar
• van Gemen B, van Beuningen R, Nabbe A, et al. A one-tube quantitative HIV-1 RNA NASBA nucleic acid amplification assay using electrochemiluminescent (ECL) labelled probes. J Virol Methods. 1994;49(2):157–167. doi:10.1016/0166-0934(94)90040-X7822457
   PubMed Web of Science ®Google Scholar
• Leone G, van Gemen B, Schoen CD, van Schijndel H, Kramer FR. Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA. Nucleic Acids Res. 1998;26(9):2150–2155. doi:10.1093/nar/26.9.21509547273
   PubMed Web of Science ®Google Scholar
• Loens K, Ursi D, Goossens H, Ieven M. Nucleic acid sequence-based amplification In: Walker JM, Rapley R, editors. Medical Biomethods Handbook. Totowa, NJ: Humana Press; 2005:273–291.
   Google Scholar
• Ginocchio CC, Kemper M, Stellrecht KA, Witt DJ. Multicenter evaluation of the performance characteristics of the nuclisens HIV-1 QT assay used for quantitation of human immunodeficiency virus type 1 RNA. J Clin Microbiol. 2003;41(1):164. doi:10.1128/JCM.41.1.164-173.200312517843
   PubMed Web of Science ®Google Scholar
• Loens K, Ieven M, Ursi D, et al. Detection of Mycoplasma pneumoniae by real-time nucleic acid sequence-based amplification. J Clin Microbiol. 2003;41(9):4448–4450. doi:10.1128/JCM.41.9.4448-4450.200312958290
   PubMed Web of Science ®Google Scholar
• Damen M, Sillekens P, Cuypers HTM, Frantzen I, Melsert R. Characterization of the quantitative HCV NASBA assay. J Virol Methods. 1999;82(1):45–54. doi:10.1016/S0166-0934(99)00079-810507412
   PubMed Web of Science ®Google Scholar
• Loens K, Ieven M, Ursi D, et al. Improved detection of rhinoviruses by nucleic acid sequence-based amplification after nucleotide sequence determination of the 5ʹ noncoding regions of additional rhinovirus strains. J Clin Microbiol. 2003;41(5):1971–1976. doi:10.1128/JCM.41.5.1971-1976.200312734236
   PubMed Web of Science ®Google Scholar
• Zappacosta R, Sablone F, Pansa L, Buca D, Buca D, Analytic RS. Diagnostic performances of human papillomavirus E6/E7 mRNA test on up-to 11-year-old liquid-based cervical samples. A biobank-based longitudinal study. Int J Mol Sci. 2017;18(7):1480.
   Web of Science ®Google Scholar
• Zhang F, Tetali S, Wang XP, Kaplan MH, Cromme FV, Ginocchio CC. Detection of human cytomegalovirus pp67 late gene transcripts in cerebrospinal fluid of human immunodeficiency virus type 1-infected patients by nucleic acid sequence-based amplification. J Clin Microbiol. 2000;38(5):1920.10790122
   PubMed Web of Science ®Google Scholar
• Morré SA, Sillekens PT, Jacobs MV, et al. Monitoring of Chlamydia trachomatis infections after antibiotic treatment using RNA detection by nucleic acid sequence based amplification. MP. 1998;51(3):149–154. doi:10.1136/mp.51.3.1499850338
   PubMed Web of Science ®Google Scholar
• van der Meide WF, Schoone GJ, Faber WR, et al. Quantitative nucleic acid sequence-based assay as a new molecular tool for detection and quantification of Leishmania parasites in skin biopsy samples. J Clin Microbiol. 2005;43(11):5560–5566. doi:10.1128/JCM.43.11.5560-5566.200516272487
   PubMed Web of Science ®Google Scholar
• van der Vliet GM, Cho SN, Kampirapap K, et al. Use of NASBA RNA amplification for detection of Mycobacterium leprae in skin biopsies from untreated and treated leprosy patients. Int J Leprosy Mycobacterial Dis. 1996;64(4):396–403.
   Google Scholar
• van Deursen PB, Gunther AW, van Riel CC, et al. A novel quantitative multiplex NASBA method: application to measuring tissue factor and CD14 mRNA levels in human monocytes. Nucleic Acids Res. 1999;27:17. doi:10.1093/nar/27.17.e15-i
   Google Scholar
• Jean J, Blais B, Darveau A, Fliss I. Simultaneous detection and identification of hepatitis A virus and rotavirus by multiplex nucleic acid sequence-based amplification (NASBA) and microtiter plate hybridization system. J Virol Methods. 2002;105(1):123–132. doi:10.1016/s0166-0934(02)00096-412176149
   PubMed Web of Science ®Google Scholar
• Klerks MM, Leone GOM, Verbeek M, van den Heuvel JFJM, Schoen CD. Development of a multiplex AmpliDet RNA for the simultaneous detection of potato leafroll virus and potato virus Y in potato tubers. J Virol Methods. 2001;93(1):115–125. doi:10.1016/S0166-0934(01)00258-011311350
   PubMed Web of Science ®Google Scholar
• Craw P, Balachandran W. Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. Lab Chip. 2012;12(14):2469–2486. doi:10.1039/c2lc40100b22592150
   PubMed Web of Science ®Google Scholar
• Loens K, Ursi D, Ieven M, et al. Detection of mycoplasma pneumoniae in spiked clinical samples by nucleic acid sequence-based amplification. J Clin Microbiol. 2002;40(4):1339–1345. doi:10.1128/JCM.40.4.1339-1345.200211923354
   PubMed Web of Science ®Google Scholar
• Piepenburg O, Williams CH, Stemple DL, Armes NA. DNA detection using recombination proteins. PLoS Biol. 2006;4(7):e204–e204. doi:10.1371/journal.pbio.004020416756388
   PubMed Web of Science ®Google Scholar
• Moore MD, Jaykus L-A. Recombinase polymerase amplification: a promising point-of-care detection method for enteric viruses. Future Virol. 2017;12(8):421–429. doi:10.2217/fvl-2017-0034
   Web of Science ®Google Scholar
• Higgins M, Ravenhall M, Ward D, et al. PrimedRPA: primer design for recombinase polymerase amplification assays. Bioinformatics. 2018;35(4):682–684.
   Web of Science ®Google Scholar
• Shen F, Davydova EK, Du W, Kreutz JE, Piepenburg O, Ismagilov RF. Digital isothermal quantification of nucleic acids via simultaneous chemical initiation of recombinase polymerase amplification reactions on SlipChip. Anal Chem. 2011;83(9):3533–3540. doi:10.1021/ac200247e21476587
   PubMed Web of Science ®Google Scholar
• Tsaloglou MN, Watson RJ, Rushworth CM, et al. Real-time microfluidic recombinase polymerase amplification for the toxin B gene of clostridium difficile on a SlipChip platform. Analyst. 2015;140(1):258–264. doi:10.1039/C4AN01683A25371968
   PubMed Web of Science ®Google Scholar
• Yeh EC, Fu CC, Hu L, Thakur R, Feng J, Lee LP. Self-powered integrated microfluidic point-of-care low-cost enabling (SIMPLE) chip. Sci Adv. 2017;3(3):e1501645. doi:10.1126/sciadv.150164528345028
   PubMed Web of Science ®Google Scholar
• Santiago-Felipe S, Tortajada-Genaro LA, Morais S, Puchades R, Maquieira A. Isothermal DNA amplification strategies for duplex microorganism detection. Food Chem. 2015;174:509–515. doi:10.1016/j.foodchem.2014.11.08025529713
   PubMed Web of Science ®Google Scholar
• Liu HB, Du XJ, Zang YX, Li P, Wang S. SERS-based lateral flow strip biosensor for simultaneous detection of listeria monocytogenes and salmonella enterica serotype enteritidis. J Agric Food Chem. 2017;65(47):10290–10299. doi:10.1021/acs.jafc.7b0395729095602
   PubMed Web of Science ®Google Scholar
• Daher RK, Stewart G, Boissinot M, Bergeron MG. Isothermal recombinase polymerase amplification assay applied to the detection of group B streptococci in vaginal/anal samples. Clin Chem. 2014;60(4):660–666. doi:10.1373/clinchem.2013.21350424463560
   PubMed Web of Science ®Google Scholar
• Crannell Z, Castellanos-Gonzalez A, Nair G, Mejia R, White AC, Richards-Kortum R. Multiplexed recombinase polymerase amplification assay to detect intestinal protozoa. Anal Chem. 2016;88(3):1610–1616. doi:10.1021/acs.analchem.5b0326726669715
   PubMed Web of Science ®Google Scholar
• Lau HY, Wang Y, Wee EJH, Botella JR, Trau M. Field demonstration of a multiplexed point-of-care diagnostic platform for plant pathogens. Anal Chem. 2016;88(16):8074–8081. doi:10.1021/acs.analchem.6b0155127403651
   PubMed Web of Science ®Google Scholar
• Abd El Wahed A, Patel P, Faye O, et al. Recombinase Polymerase Amplification Assay for Rapid Diagnostics of Dengue Infection. PLoS One. 2015;10(6):e0129682. doi:10.1371/journal.pone.012968226075598
   PubMed Web of Science ®Google Scholar
• Abd El Wahed A, Weidmann M, Hufert FT. Diagnostics-in-a-suitcase: development of a portable and rapid assay for the detection of the emerging avian influenza A (H7N9) virus. J Clin Virol. 2015;69:16–21. doi:10.1016/j.jcv.2015.05.00426209370
   PubMed Web of Science ®Google Scholar
• Renner LD, Zan J, Hu LI, et al. Detection of ESKAPE bacterial pathogens at the point of care using isothermal DNA-based assays in a portable degas-actuated microfluidic diagnostic assay platform. Appl Environ Microbiol. 2017;83:4. doi:10.1128/AEM.02449-16
   Web of Science ®Google Scholar
• Branavan M, Mackay RE, Craw P, et al. Modular development of a prototype point of care molecular diagnostic platform for sexually transmitted infections. Med Eng Phys. 2016;38(8):741–748. doi:10.1016/j.medengphy.2016.04.02227238759
   PubMed Web of Science ®Google Scholar
• Hu C, Kalsi S, Zeimpekis I, et al. Ultra-fast electronic detection of antimicrobial resistance genes using isothermal amplification and Thin Film Transistor sensors. Biosens Bioelectron. 2017;96:281–287. doi:10.1016/j.bios.2017.05.01628505562
   PubMed Web of Science ®Google Scholar
• Kim TH, Park J, Kim CJ, Cho YK. Fully integrated lab-on-a-disc for nucleic acid analysis of food-borne pathogens. Anal Chem. 2014;86(8):3841–3848. doi:10.1021/ac403971h24635032
   PubMed Web of Science ®Google Scholar
• Choi G, Jung JH, Park BH, et al. A centrifugal direct recombinase polymerase amplification (direct-RPA) microdevice for multiplex and real-time identification of food poisoning bacteria. Lab Chip. 2016;16(12):2309–2316. doi:10.1039/C6LC00329J27216297
   PubMed Web of Science ®Google Scholar
• Lutz S, Weber P, Focke M, et al. Microfluidic lab-on-a-foil for nucleic acid analysis based on isothermal recombinase polymerase amplification (RPA). Lab Chip. 2010;10(7):887–893. doi:10.1039/b921140c20300675
   PubMed Web of Science ®Google Scholar
• Euler M, Wang Y, Otto P, et al. Recombinase polymerase amplification assay for rapid detection of Francisella tularensis. J Clin Microbiol. 2012;50(7):2234.22518861
   PubMed Web of Science ®Google Scholar
• Moore MD, Jaykus L-A. Development of a recombinase polymerase amplification assay for detection of epidemic human noroviruses. Sci Rep. 2017;7:40244. doi:10.1038/srep4024428067278
   PubMed Web of Science ®Google Scholar
• Yang H-L, Wei S, Gooneratne R, et al. Development of a recombinase polymerase amplification assay for Vibrio parahaemolyticus detection with an internal amplification control. Can J Microbiol. 2018;64(4):223–230. doi:10.1139/cjm-2017-050429351385
   PubMed Web of Science ®Google Scholar
• Ahn H, Batule BS, Seok Y, Kim M-G. Single-step recombinase polymerase amplification assay based on a paper chip for simultaneous detection of multiple foodborne pathogens. Anal Chem. 2018;90(17):10211–10216. doi:10.1021/acs.analchem.8b0130930075080
   PubMed Web of Science ®Google Scholar
• Qi Y, Yin Q, Shao Y, et al. Rapid and visual detection of coxiella burnetii using recombinase polymerase amplification combined with lateral flow strips. Biomed Res Int. 2018;2018:10.
   Web of Science ®Google Scholar
• Wang H, Sun M, Xu D, et al. Rapid visual detection of cyprinid herpesvirus 2 by recombinase polymerase amplification combined with a lateral flow dipstick. J Fish Dis. 2018;41(8):1201–1206.
   Web of Science ®Google Scholar
• Rohrman BA, Richards-Kortum RR. A paper and plastic device for performing recombinase polymerase amplification of HIV DNA. Lab Chip. 2012;12(17):3082–3088. doi:10.1039/c2lc40423k22733333
   PubMed Web of Science ®Google Scholar
• Ali MM, Li F, Zhang Z, et al. Rolling circle amplification: a versatile tool for chemical biology, materials science and medicine. Chem Soc Rev. 2014;43(10):3324–3341.24643375
   PubMed Web of Science ®Google Scholar
• Ali MM, Li Y. Colorimetric sensing by using allosteric-DNAzyme-coupled rolling circle amplification and a peptide nucleic acid–organic dye probe. Angew Chem Int Ed. 2009;48(19):3512–3515.
   Web of Science ®Google Scholar
• Zhao W, Gao Y, Kandadai SA, Brook MA, Li Y. DNA polymerization on gold nanoparticles through rolling circle amplification: towards novel scaffolds for three-dimensional periodic nanoassemblies. Angew Chem. 2006;45(15):2409–2413. doi:10.1002/anie.20060006116526071
   PubMedGoogle Scholar
• Hamidi SV, Ghourchian H, Tavoosidana G. Real-time detection of H5N1 influenza virus through hyperbranched rolling circle amplification. Analyst. 2015;140(5):1502–1509. doi:10.1039/c4an01954g25627866
   PubMed Web of Science ®Google Scholar
• Ali MM, Su S, Filipe CDM, Pelton R, Li Y, Enzymatic manipulations of DNA oligonucleotides on microgel: towards development of DNA–microgel bioassays. Chem Commun. 2007;43:4459–4461. doi:10.1039/b709817k
   Web of Science ®Google Scholar
• Linck L, Reiß E, Bier F, Resch-Genger U. Direct labeling rolling circle amplification as a straightforward signal amplification technique for biodetection formats. Anal Methods. 2012;4(5):1215–1220.
   Web of Science ®Google Scholar
• Göransson J, Ke R, Nong RY, et al. Rapid identification of bio-molecules applied for detection of biosecurity agents using rolling circle amplification. PLoS One. 2012;7(2):e31068.22383994
   PubMed Web of Science ®Google Scholar
• Sato K, Ishii R, Sasaki N, Sato K, Nilsson M. Bead-based padlock rolling circle amplification for single DNA molecule counting. Anal Biochem. 2013;437(1):43–45.23467098
   PubMed Web of Science ®Google Scholar
• Ebai T, Souza de Oliveira FM, Löf L, et al. Analytically sensitive protein detection in microtiter plates by proximity ligation with rolling circle amplification. Clin Chem. 2017;63(9):1497. doi:10.1373/clinchem.2017.27183328667186
   PubMed Web of Science ®Google Scholar
• Zhang B, Wang Q, Wu J, Chen Y, Wang J. Detection of nucleic acids with a novel stem-loop primer rolling circle amplification technique. Reports. 2018;64(2):69–80.
   Google Scholar
• Schweitzer B, Wiltshire S, Lambert J, et al. Immunoassays with rolling circle DNA amplification: a versatile platform for ultrasensitive antigen detection. Proc Natl Acad Sci. 2000;97(18):10113. doi:10.1073/pnas.17023719710954739
   PubMed Web of Science ®Google Scholar
• Cheng W, Yan F, Ding L, Ju H, Yin Y. Cascade signal amplification strategy for subattomolar protein detection by rolling circle amplification and quantum dots tagging. Anal Chem. 2010;82(8):3337–3342. doi:10.1021/ac100144g20345087
   PubMed Web of Science ®Google Scholar
• Nilsson M, Malmgren H, Samiotaki M, Kwiatkowski M, Chowdhary BP, Landegren U. Padlock probes: circularizing oligonucleotides for localized DNA detection. Science (New York, NY). 1994;265(5181):2085–2088. doi:10.1126/science.7522346
   Google Scholar
• Polidoros AN, Pasentsis K, Tsaftaris AS. Rolling circle amplification-RACE: a method for simultaneous isolation of 5ʹ and 3ʹ cDNA ends from amplified cDNA templates. Biotechniques. 2006;41(1):35–36, 38, 40 passim. doi:10.2144/00011220516869511
   PubMed Web of Science ®Google Scholar
• Rubin E, Rumney S, Wang S, Kool ET. Convergent DNA synthesis: a non-enzymatic dimerization approach to circular oligodeoxynucleotides. Nucleic Acids Res. 1995;23(17):3547–3553. doi:10.1093/nar/23.17.35477567468
   PubMed Web of Science ®Google Scholar
• Dean FB, Nelson JR, Giesler TL, Lasken RS. Rapid amplification of plasmid and phage DNA using Phi29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 2001;11(6):1095–1099. doi:10.1101/gr.18050111381035
   PubMed Web of Science ®Google Scholar
• Lizardi PM, Huang X, Zhu Z, Bray-Ward P, Thomas DC, Ward DC. Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat Genet. 1998;19(3):225–232. doi:10.1038/8989662393
   PubMed Web of Science ®Google Scholar
• Zhang DY, Brandwein M, Hsuih T, Li HB. Ramification amplification: a novel isothermal DNA amplification method. Mole Diagn. 2001;6(2):141–150. doi:10.2165/00066982-200106020-00010
   PubMedGoogle Scholar
• Thomas DC, Nardone GA, Randall SK. Amplification of padlock probes for DNA diagnostics by cascade rolling circle amplification or the polymerase chain reaction. Arch Pathol Lab Med. 1999;123(12):1170–1176. doi:10.1043/1543-2165-123.20.117010583921
   PubMed Web of Science ®Google Scholar
• Konry T, Smolina I, Yarmush JM, Irimia D, Yarmush ML. Ultrasensitive detection of low-abundance surface-marker protein using isothermal rolling circle amplification in a microfluidic nanoliter platform. Small. 2011;7(3):395–400. doi:10.1002/smll.20100162021294269
   PubMed Web of Science ®Google Scholar
• Zhou H, Bouwman K, Schotanus M, et al. Two-color, rolling-circle amplification on antibody microarrays for sensitive, multiplexed serum-protein measurements. Genome Biol. 2004;5(4):R28. doi:10.1186/gb-2004-5-4-r2815059261
   PubMed Web of Science ®Google Scholar
• Juul S, Nielsen CJ, Labouriau R, et al. Droplet microfluidics platform for highly sensitive and quantitative detection of malaria-causing plasmodium parasites based on enzyme activity measurement. ACS Nano. 2012;6(12):10676–10683. doi:10.1021/nn303859423121492
   PubMed Web of Science ®Google Scholar
• Ibarra-Meneses AV, Cruz I, Chicharro C, et al. Evaluation of fluorimetry and direct visualization to interpret results of a loop-mediated isothermal amplification kit to detect Leishmania DNA. Parasit Vectors. 2018;11(1):250. doi:10.1186/s13071-018-2836-229665825
   PubMed Web of Science ®Google Scholar
• Kuhn H, Demidov VV, Frank-Kamenetskii MD. Rolling-circle amplification under topological constraints. Nucleic Acids Res. 2002;30(2):574–580. doi:10.1093/nar/30.2.57411788721
   PubMed Web of Science ®Google Scholar
• Walker GT, Little MC, Nadeau JG, Shank DD. Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system. Proc Natl Acad Sci. 1992;89(1):392. doi:10.1073/pnas.89.1.3921309614
   PubMed Web of Science ®Google Scholar
• Hellyer TJ, DesJardin LE, Teixeira L, Perkins MD, Cave MD, Eisenach KD. Detection of viable mycobacterium tuberculosis by reverse transcriptase-strand displacement amplification of mRNA. J Clin Microbiol. 1999;37(3):518–523.9986805
   PubMed Web of Science ®Google Scholar
• Little MC, Andrews J, Moore R, et al. Strand displacement amplification and homogeneous real-time detection incorporated in a second-generation DNA probe system, BDProbeTecET. Clin Chem. 1999;45(6):I):777–784.
   Web of Science ®Google Scholar
• Chen Q, Bian Z, Chen M, et al. Real-time monitoring of the strand displacement amplification (SDA) of human cytomegalovirus by a new SDA-piezoelectric DNA sensor system. Biosens Bioelectron. 2009;24(12):3412–3418. doi:10.1016/j.bios.2009.06.01219576755
   PubMed Web of Science ®Google Scholar
• Dong H, Zhang J, Ju H, et al. Highly sensitive multiple microRNA detection based on fluorescence quenching of graphene oxide and isothermal strand-displacement polymerase reaction. Anal Chem. 2012;84(10):4587–4593. doi:10.1021/ac300721u22510208
   PubMed Web of Science ®Google Scholar
• Zhang -Z-Z, Zhang C-Y. Highly sensitive detection of protein with aptamer-based target-triggering two-stage amplification. Anal Chem. 2012;84(3):1623–1629. doi:10.1021/ac202900222224936
   PubMed Web of Science ®Google Scholar
• Cui W, Wang L, Jiang W. A dual amplification fluorescent strategy for sensitive detection of DNA methyltransferase activity based on strand displacement amplification and DNAzyme amplification. Biosens Bioelectron. 2016;77:650–655. doi:10.1016/j.bios.2015.10.04026492469
   PubMed Web of Science ®Google Scholar
• Yan X, Tang M, Yang J, et al. A one-step fluorescent biosensing strategy for highly sensitive detection of HIV-related DNA based on strand displacement amplification and DNAzymes. RSC Adv. 2018;8(55):31710–31716. doi:10.1039/C8RA06480F
   Web of Science ®Google Scholar
• Verkooyen RP, Noordhoek GT, Klapper PE, et al. Reliability of nucleic acid amplification methods for detection of Chlamydia trachomatis in urine: results of the first international collaborative quality control study among 96 laboratories. J Clin Microbiol. 2003;41(7):3013. doi:10.1128/JCM.41.7.3013-3016.200312843035
   PubMed Web of Science ®Google Scholar
• Akduman D, Ehret JM, Messina K, Ragsdale S, Judson FN. Evaluation of a strand displacement amplification assay (BD ProbeTec-SDA) for detection of Neisseria gonorrhoeae in urine specimens. J Clin Microbiol. 2002;40(1):281. doi:10.1128/JCM.40.1.281-283.200211773133
   PubMed Web of Science ®Google Scholar
• Van Der Pol B, Ferrero DV, Buck-Barrington L, et al. Multicenter evaluation of the BDProbeTec ET System for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in urine specimens, female endocervical swabs, and male urethral swabs. J Clin Microbiol. 2001;39(3):1008–1016. doi:10.1128/JCM.39.3.1008-1016.200111230419
   PubMed Web of Science ®Google Scholar
• Shi C, Liu Q, Ma C, Zhong W. Exponential strand-displacement amplification for detection of MicroRNAs. Anal Chem. 2014;86(1):336–339. doi:10.1021/ac403804324345199
   PubMed Web of Science ®Google Scholar
• Wang Y, Wang Y, Wang H, Xu J, Ye C. A label-free technique for accurate detection of nucleic acid-based self-avoiding molecular recognition systems supplemented multiple cross-displacement amplification and nanoparticles based biosensor. Artif Cells Nanomed Biotechnol. 2018;46(8):1671–1684. doi:10.1080/21691401.2017.138974829037087
   PubMed Web of Science ®Google Scholar
• Wang Y, Yan W, Fu S, et al. Multiple cross displacement amplification coupled with nanoparticles-based lateral flow biosensor for detection of staphylococcus aureus and identification of methicillin-resistant S. aureus. Front Microbiol. 2018;9:907. doi:10.3389/fmicb.2018.0090729867818
   PubMed Web of Science ®Google Scholar
• Wang Y, Li H, Li D, et al. Multiple cross displacement amplification combined with gold nanoparticle-based lateral flow biosensor for detection of vibrio parahaemolyticus. Front Microbiol. 2016;7:2047.28066368
   PubMed Web of Science ®Google Scholar
• Wang Y, Wang Y, Xu J, Ye C. Development of multiple cross displacement amplification label-based gold nanoparticles lateral flow biosensor for detection of Shigella spp. Front Microbiol. 2016;2016(7):1834.
   Google Scholar
• Wang Y, Yan W, Wang Y, Xu J, Ye C. Rapid, sensitive and reliable detection of Klebsiella pneumoniae by label-free multiple cross displacement amplification coupled with nanoparticles-based biosensor. J Microbiol Methods. 2018;149:80–88. doi:10.1016/j.mimet.2018.05.00329730325
   PubMed Web of Science ®Google Scholar
• Wang Y, Li H, Wang Y, et al. Development of multiple cross displacement amplification label-based gold nanoparticles lateral flow biosensor for detection of Listeria monocytogenes. Int J Nanomedicine. 2017;12:473–486. doi:10.2147/IJN.S12362528138243
   PubMed Web of Science ®Google Scholar
• Niu L, Zhao F, Chen J, et al. Isothermal amplification and rapid detection of Klebsiella pneumoniae based on the multiple cross displacement amplification (MCDA) and gold nanoparticle lateral flow biosensor (LFB). PLoS One. 2018;13(10):e0204332. doi:10.1371/journal.pone.020433230273362
   PubMed Web of Science ®Google Scholar
• Asiello PJ, Baeumner AJ. Miniaturized isothermal nucleic acid amplification, a review. Lab Chip. 2011;11(8):1420–1430. doi:10.1039/c0lc00666a21387067
   PubMed Web of Science ®Google Scholar
• Zanoli LM, Spoto G. Isothermal amplification methods for the detection of nucleic acids in microfluidic devices. Biosensors. 2013;3(1):18. doi:10.3390/bios301001825587397
   PubMedGoogle Scholar
• Esch MB, Locascio LE, Tarlov MJ, Durst RA. Detection of viable Cryptosporidium parvum using DNA-modified liposomes in a microfluidic chip. Anal Chem. 2001;73(13):2952–2958. doi:10.1021/ac001508n11467540
   PubMed Web of Science ®Google Scholar
• Kaarj K, Akarapipad P, Yoon J-Y. Simpler, faster, and sensitive zika virus assay using smartphone detection of loop-mediated isothermal amplification on paper microfluidic chips. Sci Rep. 2018;8(1):12438. doi:10.1038/s41598-018-30797-930127503
   PubMed Web of Science ®Google Scholar
• Magro L, Jacquelin B, Escadafal C, et al. Paper-based RNA detection and multiplexed analysis for Ebola virus diagnostics. Sci Rep. 2017;7(1):1347. doi:10.1038/s41598-017-00758-928465576
   PubMed Web of Science ®Google Scholar
• Linnes JC, Rodriguez NM, Liu L, Klapperich CM. Polyethersulfone improves isothermal nucleic acid amplification compared to current paper-based diagnostics. Biomed Microdevices. 2016;18(2):30. doi:10.1007/s10544-016-0057-z26906904
   PubMed Web of Science ®Google Scholar
• Becker H, Gartner C. Polymer microfabrication technologies for microfluidic systems. Anal Bioanal Chem. 2008;390(1):89–111. doi:10.1007/s00216-007-1692-217989961
   PubMed Web of Science ®Google Scholar
• Van Ness J, Van Ness LK, Galas DJ. Isothermal reactions for the amplification of oligonucleotides. Proc Natl Acad Sci. 2003;100(8):4504. doi:10.1073/pnas.073081110012679520
   PubMed Web of Science ®Google Scholar
• Kurn N, Chen P, Heath JD, Kopf-Sill A, Stephens KM, Wang S. Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications. Clin Chem. 2005;51(10):1973. doi:10.1373/clinchem.2005.05369416123149
   PubMed Web of Science ®Google Scholar
• Shimada M, Hino F, Sagawa H, Mukai H, Asada K, Kato I. [Development of the detection system for Mycobacterium tuberculosis DNA by using the isothermal DNA amplification method ICAN]. Rinsho Byori. 2002;50(5):528–532.12078054
   PubMedGoogle Scholar
• Ma C, Liu S, Shi C. Ultrasensitive detection of microRNAs based on hairpin fluorescence probe assisted isothermal amplification. Biosens Bioelectron. 2014;58:57–60. doi:10.1016/j.bios.2014.02.03424613970
   PubMed Web of Science ®Google Scholar
• Connolly AR, Trau M. Rapid DNA detection by beacon-assisted detection amplification. Nat Protoc. 2011;6:772. doi:10.1038/nprot.2011.32621637197
   PubMed Web of Science ®Google Scholar
• Norén T, Unemo M, Magnusson C, Eiserman M, Matussek A. Evaluation of the rapid loop-mediated isothermal amplification assay illumigene for diagnosis of clostridium difficile in an outbreak situation. APMIS. 2014;122(2):155–160. doi:10.1111/apm.1212123758095
   PubMed Web of Science ®Google Scholar
• Lalande V, Barrault L, Wadel S, Eckert C, Petit J-C, Barbut F. Evaluation of a loop-mediated isothermal amplification assay for diagnosis of clostridium difficile infections. J Clin Microbiol. 2011;49(7):2714. doi:10.1128/JCM.01835-1021525213
   PubMed Web of Science ®Google Scholar
• Chow WH, McCloskey C, Tong Y, et al. Application of isothermal helicase-dependent amplification with a disposable detection device in a simple sensitive stool test for toxigenic Clostridium difficile. J Mol Diagn. 2008;10(5):452–458. doi:10.2353/jmoldx.2008.08000818669881
   PubMed Web of Science ®Google Scholar
• Gaydos CA, Schwebke J, Dombrowski J, et al. Clinical performance of the Solana(R) point-of-care trichomonas assay from clinician-collected vaginal swabs and urine specimens from symptomatic and asymptomatic women. Expert Rev Mol Diagn. 2017;17(3):303–306. doi:10.1080/14737159.2017.128282328092466
   PubMed Web of Science ®Google Scholar
• Uphoff TS, Buchan BW, Ledeboer NA, Granato PA, Daly JA, Marti TN. Multicenter evaluation of the solana group a streptococcus assay: comparison with culture. J Clin Microbiol. 2016;54(9):2388–2390. doi:10.1128/JCM.01268-1627358464
   PubMed Web of Science ®Google Scholar
• Goldmeyer J, Li H, McCormac M, et al. Identification of Staphylococcus aureus and determination of methicillin resistance directly from positive blood cultures by isothermal amplification and a disposable detection device. J Clin Microbiol. 2008;46(4):1534. doi:10.1128/JCM.02234-0718234878
   PubMed Web of Science ®Google Scholar
• Moosavian M, Seyed-Mohammadi S, Saki M, et al. Loop-mediated isothermal amplification for detection of Legionella pneumophila in respiratory specimens of hospitalized patients in Ahvaz, southwest Iran. Infect Drug Resist. 2019;12:529–534. doi:10.2147/IDR.S19809930881058
   PubMed Web of Science ®Google Scholar
• Couturier B, Schlaberg R, Konzak C, Nicholes J, Law C, She RC. tcdA as a diagnostic target in a loop‐mediated amplification assay for detecting toxigenic clostridium difficile. J Clin Lab Anal. 2013;27(3):171–176. doi:10.1002/jcla.2013.27.issue-323686774
   PubMed Web of Science ®Google Scholar
• Cheaveau J, Nguyen H, Chow B, et al. Clinical validation of a commercial LAMP test for ruling out malaria in returning travelers: a prospective diagnostic trial. Open Forum Infect Dis. 2018;5(11):ofy260–ofy260. doi:10.1093/ofid/ofy209.17230465012
   PubMed Web of Science ®Google Scholar
• Abirami N, Nidaullah H, Chuah L-O, et al. Evaluation of commercial loop-mediated isothermal amplification based kit and ready-to-use plating system for detection of Salmonella in naturally contaminated poultry and their processing environment. Food Control. 2016;70:74–78. doi:10.1016/j.foodcont.2016.05.035
   Web of Science ®Google Scholar
• Lim HSY, Zheng Q, Miks-Krajnik M, Turner M, Yuk H-G. Evaluation of commercial kit based on loop-mediated isothermal amplification for rapid detection of low levels of uninjured and injured salmonella on duck meat, bean sprouts, and fishballs in Singapore. J Food Prot. 2015;78(6):1203–1207. doi:10.4315/0362-028X.JFP-14-53526038914
   PubMed Web of Science ®Google Scholar
• Tegegne B, Getie S, Lemma W, Mohon AN, Pillai DR. Performance of loop-mediated isothermal amplification (LAMP) for the diagnosis of malaria among malaria suspected pregnant women in Northwest Ethiopia. Malar J. 2017;16(1):34. doi:10.1186/s12936-017-1692-428103883
   PubMed Web of Science ®Google Scholar
• Nguyen VAT, Nguyen HV, Dinh TV, et al. Evaluation of Loopamp™MTBC detection kit for diagnosis of pulmonary tuberculosis at a peripheral laboratory in a high burden setting. Diagn Microbiol Infect Dis. 2018;90(3):190–195. doi:10.1016/j.diagmicrobio.2017.11.00929246776
   PubMed Web of Science ®Google Scholar
• Matthias K, Sven E, Ulrich V, et al. Value of the eazyplex® CSF direct assay in rapid diagnosis of invasive meningococcal disease – case report. Acta Microbiol Immunol Hung. 2018;65(3):309–315. doi:10.1556/030.65.2018.02129512393
   PubMed Web of Science ®Google Scholar
• Findlay J, Hopkins KL, Meunier D, Woodford N. Evaluation of three commercial assays for rapid detection of genes encoding clinically relevant carbapenemases in cultured bacteria. J Antimicrob Chemother. 2015;70(5):1338–1342. doi:10.1093/jac/dku57125630646
   PubMed Web of Science ®Google Scholar
• Hinic V, Ziegler J, Straub C, Goldenberger D, Frei R. Extended-spectrum beta-lactamase (ESBL) detection directly from urine samples with the rapid isothermal amplification-based eazyplex(R) SuperBug CRE assay: proof of concept. J Microbiol Methods. 2015;119:203–205. doi:10.1016/j.mimet.2015.10.01526506282
   PubMed Web of Science ®Google Scholar
• Rodel J, Bohnert JA, Stoll S, et al. Evaluation of loop-mediated isothermal amplification for the rapid identification of bacteria and resistance determinants in positive blood cultures. Eur J Clin Microbiol Infect Dis. 2017;36(6):1033–1040. doi:10.1007/s10096-016-2888-128063000
   PubMed Web of Science ®Google Scholar
• Mourez T, Delaugerre C, Vray M, Lemee V, Simon F, Plantier JC. Comparison of the bioMerieux NucliSENS EasyQ HIV-1 v2.0-HIV-1 RNA quantification assay versus abbott realtime HIV-1 and Roche Cobas TaqMan HIV-1 v2.0 on current epidemic HIV-1 variants. J Clin Virol. 2015;71:76–81. doi:10.1016/j.jcv.2015.08.00726318912
   PubMed Web of Science ®Google Scholar
• Van Der Pol B, Hook EWI, Williams JA, Smith B, Taylor SN. Performance of the BD CTQx and GCQx amplified assays on the BD viper LT compared with the BD viper XTR system. Sex Transm Dis. 2015;42(9):521–523. doi:10.1097/OLQ.000000000000031326270114
   PubMed Web of Science ®Google Scholar
• Van Der Pol B, Williams JA, Fuller D, Taylor SN, Hook EW 3rd. Combined testing for chlamydia, gonorrhea, and trichomonas by use of the BD Max CT/GC/TV assay with genitourinary specimen types. J Clin Microbiol. 2017;55(1):155–164. doi:10.1128/JCM.01766-1627795343
   PubMed Web of Science ®Google Scholar
• Nye MB, Osiecki J, Lewinski M, et al. Detection of Chlamydia trachomatis and Neisseria gonorrhoeae with the cobas CT/NG v2.0 test: performance compared with the BD probeTec CT Qx and GC Qx amplified DNA and aptima AC2 assays. Sex Transm Infect. 2019;95(2):87. doi:10.1136/sextrans-2018-05354530126947
   PubMed Web of Science ®Google Scholar
• Chevaliez S, Dubernet F, Dauvillier C, Hezode C, Pawlotsky JM. The new aptima HCV quant dx real-time TMA assay accurately quantifies hepatitis C virus genotype 1-6 RNA. J Clin Virol. 2017;91:5–11. doi:10.1016/j.jcv.2017.03.02028380393
   PubMed Web of Science ®Google Scholar
• Bruni MP, Freitas da Silveira M, Stauffert D, et al. Aptima Trichomonas vaginalis assay elucidates significant underdiagnosis of trichomoniasis among women in Brazil according to an observational study. Sex Transm Infect. 2019;95(2):129. doi:10.1136/sextrans-2018-05356730154157
   PubMed Web of Science ®Google Scholar
• Cook DA, Smith LW, Law J, et al. Aptima HPV assay versus hybrid capture® 2 HPV test for primary cervical cancer screening in the HPV FOCAL trial. J Clin Virol. 2017;87:23–29. doi:10.1016/j.jcv.2016.12.00427988420
   PubMed Web of Science ®Google Scholar
• Ferrieri P, Nelson K, Thonen-Kerr E, Arbefeville S. Prospective evaluation of xpert xpress strep a automated PCR assay vs solana group a streptococcal NAAT vs conventional throat culture. Am J Clin Pathol. 2018;150(suppl_1):S157–S157.
   Web of Science ®Google Scholar
• Kurosaki Y, Magassouba NF, Oloniniyi OK, et al. Development and evaluation of Reverse Transcription-Loop-Mediated Isothermal Amplification (RT-LAMP) assay coupled with a portable device for rapid diagnosis of ebola virus disease in guinea. PLoS Negl Trop Dis. 2016;10(2):e0004472–e0004472. doi:10.1371/journal.pntd.000447226900929
   PubMed Web of Science ®Google Scholar
• Quoc NB, Phuong NDN, Chau NNB, Linh DTP. Closed tube loop-mediated isothermal amplification assay for rapid detection of hepatitis B virus in human blood. Heliyon. 2018;4(3):e00561. doi:10.1016/j.heliyon.2018.e0056129560471
   PubMed Web of Science ®Google Scholar
• Craw P, Mackay RE, Naveenathayalan A, et al. A simple, low-cost platform for real-time isothermal nucleic acid amplification. Sensors (Basel). 2015;15(9):23418–23430. doi:10.3390/s15092341826389913
   PubMed Web of Science ®Google Scholar
• Wang Y, Zhang B, Sun Y, Liu Y, Gu Y. Loop-mediated isothermal amplification on crude DNA as a point-of-care test for the diagnosis of mycoplasma-related vaginitis during early pregnancy. Lab Med. 2017;49(1):59–67. doi:10.1093/labmed/lmx06329272448
   PubMed Web of Science ®Google Scholar
• Liu D, Daubendiek SL, Zillman MA, Ryan K, Kool ET. Rolling Circle DNA Synthesis: Small Circular Oligonucleotides as Efficient Templates for DNA Polymerases. J Am Chem Soc.1996;118(7):1587–1594. doi:10.1021/ja952786k20830216
   PubMedGoogle Scholar
• Walker G T.. Empirical Aspects of Strand Displacement Amplification. Genome Research. 1993; 3:1–6. doi:10.1101/gr.3.1.1
   Google Scholar