Characterization of blaNDM-1- and blaSHV-12-Positive IncX3 Plasmid in an Enterobacter Hormaechei New Sequence Type 1000 from China

References

• Yong D, Toleman MA, Giske CG, et al. Characterization of a new metallo-beta-lactamase gene, bla(NDM-1), and a novel erythromycin esterase gene carried on a unique genetic structure in klebsiella pneumoniae sequence type 14 from India. Antimicrob Agents Chemother. 2009;53(12):5046–5054. doi:10.1128/AAC.00774-0919770275
   PubMed Web of Science ®Google Scholar
• Liu L, Feng Y, McNally A, Zong Z. blaNDM-21, a new variant of blaNDM in an escherichia coli clinical isolate carrying blaCTX-M-55 and rmtB. J Antimicrob Chemother. 2018;73(9):2336–2339. doi:10.1093/jac/dky22629912337
   PubMed Web of Science ®Google Scholar
• Kumarasamy KK, Toleman MA, Walsh TR, et al. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis. 2010;10(9):597–602. doi:10.1016/S1473-3099(10)70143-220705517
   PubMed Web of Science ®Google Scholar
• Naas T, Cuzon G, Bogaerts P, Glupczynski Y, Nordmann P. Evaluation of a DNA microarray (check-MDR CT102) for rapid detection of TEM, SHV, and CTX-M extended-spectrum β-lactamases and of KPC, OXA-48, VIM, IMP, and NDM-1 carbapenemases. J Clin Microbiol. 2011;49(4):1608–1613. doi:10.1128/JCM.02607-1021325547
   PubMed Web of Science ®Google Scholar
• Mezzatesta ML, Gona F, Stefani S. Enterobacter cloacae complex: clinical impact and emerging antibiotic resistance. Future Microbiol. 2012;7(7):887–902. doi:10.2217/fmb.12.6122827309
   PubMed Web of Science ®Google Scholar
• O’Hara CM, Steigerwalt AG, Hill BC, Farmer JJ 3rd, Fanning GR, Brenner DJ. Enterobacter hormaechei, a new species of the family enterobacteriaceae formerly known as enteric group 75. J Clin Microbiol. 1989;27(9):2046–2049.2778068
   PubMed Web of Science ®Google Scholar
• Castanheira M, Sader HS, Deshpande LM, Fritsche TR, Jones RN. Antimicrobial activities of tigecycline and other broad-spectrum antimicrobials tested against serine carbapenemase- and metallo-beta-lactamase-producing enterobacteriaceae: report from the SENTRY antimicrobial surveillance program. Antimicrob Agents Chemother. 2008;52(2):570–573. doi:10.1128/AAC.01114-0718070960
   PubMed Web of Science ®Google Scholar
• Sampaio JL, Ribeiro VB, Campos JC, et al. Detection of OXA-370, an OXA-48-related class D beta-lactamase, in enterobacter hormaechei from Brazil. Antimicrob Agents Chemother. 2014;58(6):3566–3567. doi:10.1128/AAC.02510-1324709259
   PubMed Web of Science ®Google Scholar
• Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ. Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol. 2008;74(8):2461–2470. doi:10.1128/AEM.02272-0718296538
   PubMed Web of Science ®Google Scholar
• Chavda KD, Chen L, Fouts DE, et al. Comprehensive genome analysis of carbapenemase-producing enterobacter spp.: new insights into phylogeny, population structure, and resistance mechanisms. MBio. 2016;7(6):e02093–16. doi:10.1128/mBio.02093-1627965456
   PubMed Web of Science ®Google Scholar
• Hoffmann H, Roggenkamp A. Population genetics of the nomenspecies Enterobacter cloacae. Appl Environ Microbiol. 2003;69(9):5306–5318. doi:10.1128/AEM.69.9.5306-5318.200312957918
   PubMed Web of Science ®Google Scholar
• Morand PC, Billoet A, Rottman M, et al. Specific distribution within the enterobacter cloacae complex of strains isolated from infected orthopedic implants. J Clin Microbiol. 2009;47(8):2489–2495. doi:10.1128/JCM.00290-0919515837
   PubMed Web of Science ®Google Scholar
• Aminov RI, Chee-Sanford JC, Garrigues N, et al. Development, validation, and application of PCR primers for detection of tetracycline efflux genes of gram-negative bacteria. Appl Environ Microbiol. 2002;68(4):1786–1793. doi:10.1128/AEM.68.4.1786-1793.200211916697
   PubMed Web of Science ®Google Scholar
• Coque TM, Novais Â, Carattoli A, et al. Dissemination of clonally related escherichia coli strains expressing extended-spectrum β-lactamase CTX-M-15. Emerg Infect Dis. 2008;14(2):195. doi:10.3201/eid1402.07035018258110
   PubMed Web of Science ®Google Scholar
• Tijet N, Alexander DC, Richardson D, et al. New delhi metallo-β-lactamase, Ontario, Canada. Emerg Infect Dis. 2011;17(2):306. doi:10.3201/eid1702.10156121291614
   PubMed Web of Science ®Google Scholar
• Yan -J-J, Wu S-M, Tsai S-H, Wu -J-J, Su I-J. Prevalence of SHV-12 among clinical isolates of klebsiella pneumoniae producing extended-spectrum β-lactamases and identification of a novel AmpC enzyme (CMY-8) in Southern Taiwan. Antimicrob Agents Chemother. 2000;44(6):1438–1442. doi:10.1128/AAC.44.6.1438-1442.200010817689
   PubMed Web of Science ®Google Scholar
• CLSI C. Performance standards for antimicrobial susceptibility testing; twenty-fourth informational supplement. M100-S24 January. 2014.
   Google Scholar
• Fu Y, Du X, Ji J, Chen Y, Jiang Y, Yu Y. Epidemiological characteristics and genetic structure of blaNDM-1 in non-baumannii acinetobacter spp. in China. J Antimicrob Chemother. 2012;67(9):2114–2122. doi:10.1093/jac/dks19222604448
   PubMed Web of Science ®Google Scholar
• Wick RR, Judd LM, Gorrie CL, Holt KE, Phillippy AM. Unicycler: resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol. 2017;13(6):e1005595. doi:10.1371/journal.pcbi.100559528594827
   PubMed Web of Science ®Google Scholar
• Aziz RK, Bartels D, Best AA, et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics. 2008;9(1):75. doi:10.1186/1471-2164-9-7518261238
   PubMed Web of Science ®Google Scholar
• Carattoli A, Zankari E, García-Fernández A, et al. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother. 2014;58(7):3895–3903. doi:10.1128/AAC.02412-1424777092
   PubMed Web of Science ®Google Scholar
• Larsen MV, Cosentino S, Rasmussen S, et al. Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol. 2012;50(4):1355–1361. doi:10.1128/JCM.06094-1122238442
   PubMed Web of Science ®Google Scholar
• Gardner SN, Slezak T, Hall BG. kSNP3. 0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome. Bioinformatics. 2015;31(17):2877–2878. doi:10.1093/bioinformatics/btv27125913206
   PubMed Web of Science ®Google Scholar
• Richter M, Rossello-Mora R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A. 2009;106(45):19126–19131. doi:10.1073/pnas.090641210619855009
   PubMed Web of Science ®Google Scholar
• Ho PL, Li Z, Lo WU, et al. Identification and characterization of a novel incompatibility group X3 plasmid carrying bla NDM-1 in enterobacteriaceae isolates with epidemiological links to multiple geographical areas in China. Emerg Microbes Infect. 2012;1(11):e39. doi:10.1038/emi.2012.3726038408
   PubMed Web of Science ®Google Scholar
• Lai CC, Chen CC, Lu YC, et al. Simultaneous three enterobacteriaceae with different bla NDM-1-encoding plasmids in a patient transferred from mainland China to Taiwan. Infect Drug Resist. 2018;11:2555–2560. doi:10.2147/IDR.S17902430573984
   PubMed Web of Science ®Google Scholar
• Feng J, Qiu Y, Yin Z, et al. Coexistence of a novel KPC-2-encoding MDR plasmid and an NDM-1-encoding pNDM-HN380-like plasmid in a clinical isolate of citrobacter freundii. J Antimicrob Chemother. 2015;70(11):2987–2991. doi:10.1093/jac/dkv23226260129
   PubMed Web of Science ®Google Scholar
• Garcia-Fernandez A, Villa L, Carta C, et al. Klebsiella pneumoniae ST258 producing KPC-3 identified in italy carries novel plasmids and OmpK36/OmpK35 porin variants. Antimicrob Agents Chemother. 2012;56(4):2143–2145. doi:10.1128/AAC.05308-1122252815
   PubMed Web of Science ®Google Scholar
• Deshpande P, Rodrigues C, Shetty A, Kapadia F, Hedge A, Soman R. New Delhi metallo-beta lactamase (NDM-1) in enterobacteriaceae: treatment options with carbapenems compromised. J Assoc Physicians India. 2010;58(3):147–149.20848811
   PubMedGoogle Scholar
• Kopotsa K, Osei Sekyere J, Mbelle NM. Plasmid evolution in carbapenemase-producing enterobacteriaceae: a review. Ann N Y Acad Sci. 2019. doi:10.1111/nyas.14223
   Web of Science ®Google Scholar
• Wang Y, Tong MK, Chow KH, et al. Occurrence of highly conjugative IncX3 epidemic plasmid carrying bla NDM in enterobacteriaceae isolates in geographically widespread areas. Front Microbiol. 2018;9:2272. doi:10.3389/fmicb.2018.0227230294321
   PubMed Web of Science ®Google Scholar
• Tardif G, Grant RB. Transfer of plasmids from escherichia coli to pseudomonas aeruginosa: characterization of a pseudomonas aeruginosa mutant with enhanced recipient ability for enterobacterial plasmids. Antimicrob Agents Chemother. 1983;24(2):201–208. doi:10.1128/AAC.24.2.2016416159
   PubMed Web of Science ®Google Scholar