Distribution and Frequency of rpoB Mutations Detected by Xpert MTB/RIF Assay Among Beijing and Non-Beijing Rifampicin Resistant Mycobacterium tuberculosis Isolates in Bangladesh

References

• Global Tuberculosis report, 2018.
   Google Scholar
• Annual Report, National TB control Programme, Bangladesh. 2017.
   Google Scholar
• Kamal S, Hossain A, Sultana S, et al. Anti-tuberculosis drug resistance in Bangladesh: reflections from the first nationwide survey. Int J Tuberculosis Lung Dis. 2015;19(2):151–156. doi:10.5588/ijtld.14.0200
   Web of Science ®Google Scholar
• Banu S, Rahman MT, Ahmed S, et al. Multidrug-resistant tuberculosis in Bangladesh: results from a sentinel surveillance system. Int J Tuberculosis Lung Dis. 2017;21(1):12–17. doi:10.5588/ijtld.16.0384
   Web of Science ®Google Scholar
• National Guidelines on TB/HIV Management Program Collaboration & Implementation Manual; 2nd edition; 2016 Directorate General of Health Services Ministry of Health and Family Welfare Dhaka, Bangladesh. Available from:http://www.ntp.gov.bd/ntp_dashboard/magazines_image/21-TB-HIVGuidelines%202nd%20edition.pdf. Accessed February 27, 2020.
   Google Scholar
• Campbell EA, Korzheva N, Mustaev A, et al. Structural mechanism for rifampicin inhibition of bacterial RNA polymerase. Cell. 2001;104(6):901–912. doi:10.1016/S0092-8674(01)00286-011290327
   PubMed Web of Science ®Google Scholar
• Kocagoz T, Saribas Z, Alp A. Rapid determination of rifampin resistance in clinical isolates of Mycobacterium tuberculosis by real-time PCR. J Clin Microbiol. 2005;43(12):6015–6019. doi:10.1128/JCM.43.12.6015-6019.200516333091
   PubMed Web of Science ®Google Scholar
• Rahman A, Sahrin M, Afrin S, et al. Comparison of Xpert MTB/RIF assay and GenoType MTBDRplus DNA probes for detection of mutations associated with rifampicin resistance in Mycobacterium tuberculosis. PLoS One. 2016;11(4):e0152694. doi:10.1371/journal.pone.015269427054344
   PubMed Web of Science ®Google Scholar
• Mani C, Selvakumar N, Narayanan S, et al. Mutations in the rpoB gene of multidrug-resistant Mycobacterium tuberculosis clinical isolates from India. J Clin Microbiol. 2001;39(8):2987–2990. doi:10.1128/JCM.39.8.2987-2990.200111474030
   PubMed Web of Science ®Google Scholar
• Wang S, Zhao B, Song Y, et al. Molecular characterization of the rpoB gene mutations of Mycobacterium tuberculosis isolated from China. J Tuberculosis Res. 2013;1(01):1. doi:10.4236/jtr.2013.11001
   Google Scholar
• Ramaswamy S, Musser JM. Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis: 1998 update. Tubercle Lung Dis. 1998;79(1):3–29. doi:10.1054/tuld.1998.0002
   PubMedGoogle Scholar
• Pang Y, Lu, J, Wang, Y, Song, Y, Wang, S, Zhao, Y. Study of the rifampin mono-resistance mechanism in Mycobacterium tuberculosis. Antimicrob Agents Chemother. 2012;57(2):AAC. 01024–12.
   Web of Science ®Google Scholar
• Lawn SD, Nicol MP. Xpert® MTB/RIF assay: development, evaluation and implementation of a new rapid molecular diagnostic for tuberculosis and rifampicin resistance. Future Microbiol. 2011;6(9):1067–1082. doi:10.2217/fmb.11.8421958145
   PubMed Web of Science ®Google Scholar
• Hillemann D, Kubica T, Agzamova R, et al. Rifampicin and isoniazid resistance mutations in Mycobacterium tuberculosis strains isolated from patients in Kazakhstan. Int J Tuberculosis Lung Dis. 2005;9(10):1161–1167.
   Web of Science ®Google Scholar
• Lipin M, Stepanshina VN, Shemyakin IG, et al. Association of specific mutations in katG, rpoB, rpsL and rrs genes with spoligotypes of multidrug-resistant Mycobacterium tuberculosis isolates in Russia. Clin Microbiol Infect. 2007;13(6):620–626. doi:10.1111/j.1469-0691.2007.01711.x17403134
   PubMed Web of Science ®Google Scholar
• Hillemann D, Kubica T, Rusch-Gerdes S, et al. Disequilibrium in distribution of resistance mutations among Mycobacterium tuberculosis Beijing and non-Beijing strains isolated from patients in Germany. Antimicrob Agents Chemother. 2005;49(3):1229–1231. doi:10.1128/AAC.49.3.1229-1231.200515728936
   PubMed Web of Science ®Google Scholar
• Prammananan T, Cheunoy W, Taechamahapun D, et al. Distribution of rpoB mutations among multidrug-resistant Mycobacterium tuberculosis (MDRTB) strains from Thailand and development of a rapid method for mutation detection. Clin Microbiol Infect. 2008;14(5):446 453. doi:10.1111/j.1469-0691.2008.01951.x18294243
   PubMed Web of Science ®Google Scholar
• Uddin MKM, Ahmed M, Islam MR, et al. Molecular characterization and drug susceptibility profile of Mycobacterium tuberculosis isolates from Northeast Bangladesh. Infect Genet Evol. 2018;65:136–143. doi:10.1016/j.meegid.2018.07.02730048809
   PubMed Web of Science ®Google Scholar
• Banu S, Uddin MKM, Islam MR, et al. Molecular epidemiology of tuberculosis in rural Matlab, Bangladesh. Int J Tuberculosis Lung Dis. 2012;16(3):319–326. doi:10.5588/ijtld.11.0426
   PubMed Web of Science ®Google Scholar
• Uddin MKM, Chowdhury M, Ahmed S, et al. Comparison of direct versus concentrated smear microscopy in detection of pulmonary tuberculosis. BMC Res Notes. 2013;6(1):291. doi:10.1186/1756-0500-6-29123885922
   PubMedGoogle Scholar
• Organization, W.H. Automated Real-Time Nucleic Acid Amplification Technology for Rapid and Simultaneous Detection of Tuberculosis and Rifampicin Resistance: Xpert MTB. World Health Organization; 2013.
   Google Scholar
• HL, S. GenoType MTBDRplus VER 2.0 Molecular Genetic Assay for Identification of the M. tuberculosis Complex and Its Resistance to Rifampicin and Isoniazid from Clinical Specimens and Cultivatedsamples; 2012.
   Google Scholar
• Kamerbeek J, Schouls L, Kolk A, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol. 1997;35(4):907–914. doi:10.1128/JCM.35.4.907-914.19979157152
   PubMed Web of Science ®Google Scholar
• Demay C, Liens B, Burguière T, et al. SITVITWEB–a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology. Infect Genet Evol. 2012;12(4):755–766. doi:10.1016/j.meegid.2012.02.00422365971
   PubMed Web of Science ®Google Scholar
• Almeida Da Silva PE, Palomino JC. Molecular basis and mechanisms of drug resistance in Mycobacterium tuberculosis: classical and new drugs. J Antimicrob Chemother. 2011;66(7):1417–1430. doi:10.1093/jac/dkr17321558086
   PubMed Web of Science ®Google Scholar
• Kato-Maeda M, Shanley, C.A, Ackart, D, et al. Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig. Clin Vaccine Immunol. 2012;19(8):CVI. 00250–12.
   Google Scholar
• de Steenwinkel JE, Ten Kate MT, de Knegt GJ, et al. Drug susceptibility of Mycobacterium tuberculosis Beijing genotype and association with MDR TB. Emerg Infect Dis. 2012;18(4):660. doi:10.3201/eid1804.11091222469099
   PubMed Web of Science ®Google Scholar
• Ford CB, Shah RR, Maeda MK, et al. Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis. Nat Genet. 2013;45(7):784. doi:10.1038/ng.265623749189
   PubMed Web of Science ®Google Scholar
• Qian L, Abe C, Lin T-P, et al. rpoB genotypes of Mycobacterium tuberculosis Beijing family isolates from East Asian countries. J Clin Microbiol. 2002;40(3):1091–1094. doi:10.1128/JCM.40.3.1091-1094.200211880449
   PubMed Web of Science ®Google Scholar
• Fang R, Li X, Li J, et al. Mixed infections of Mycobacterium tuberculosis in tuberculosis patients in Shanghai, China. Tuberculosis. 2008;88(5):469–473. doi:10.1016/j.tube.2008.02.00218424179
   PubMed Web of Science ®Google Scholar
• Machowski EE, Kana BD. Genetic mimetics of Mycobacterium tuberculosis and methicillin resistant Staphylococcus aureus as verification standards for molecular diagnostics. J Clin Microbiol. 2017;55(12):JCM. 01111–17.
   Web of Science ®Google Scholar
• Racheal SD-M, Zephaniah D, Reggie M, et al. Diagnosis of multi-drug resistant tuberculosis mutations using Hain line probe assay and GeneXpert: a study done in Zimbabwe. Br J Med Med Res. 2015;5(8):1044. doi:10.9734/BJMMR
   Google Scholar
• Rahim Z, Nakajima C, Raqib R, et al. Molecular mechanism of rifampicin and isoniazid resistance in Mycobacterium tuberculosis from Bangladesh. Tuberculosis. 2012;92(6):529–534. doi:10.1016/j.tube.2012.07.00522863574
   PubMed Web of Science ®Google Scholar