Plasmid-Encoded bla_NDM-5 Gene That Confers High-Level Carbapenem Resistance in Salmonella Typhimurium of Pork Origin

References

• Kirk MD, Pires SM, Black RE, et al. World health organization estimates of the global and regional disease burden of 22 foodborne bacterial, protozoal, and viral diseases, 2010: a data synthesis. PLoS Med. 2015;12:1–21.
   Web of Science ®Google Scholar
• Scallan E, Hoekstra RM, Mahon BE, Jones TF, Griffin PM. An assessment of the human health impact of seven leading foodborne pathogens in the United States using disability adjusted life years. Epidemiol Infect. 2015;143:2795–2804. doi:10.1017/S095026881400318525633631
   PubMed Web of Science ®Google Scholar
• Wang J, Li Y, Xu X, et al. Antimicrobial resistance of Salmonella enterica serovar typhimurium in Shanghai, China. Front Microbiol. 2017;8:1–10. doi:10.3389/fmicb.2017.0000128197127
   PubMed Web of Science ®Google Scholar
• Kumarasamy KK, Toleman MA, Walsh TR, et al. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: A molecular, biological, and epidemiological study. Lancet Infect Dis. 2010;10:597–602. doi:10.1016/S1473-3099(10)70143-220705517
   PubMed Web of Science ®Google Scholar
• Zhang Q, Lv L, Huang X, et al. Rapid increase in carbapenemase-producing enterobacteriaceae in retail meat driven by the spread of the bla NDM-5 -carrying IncX3 plasmid in China from 2016 to 2018. Antimicrob Agents Chemother. 2019;63. doi: 10.1128/AAC.00573-19
   Web of Science ®Google Scholar
• Fernández J, Guerra B, Rodicio MR. Resistance to carbapenems in non-typhoidal Salmonella enterica serovars from humans, animals and food. Vet Sci. 2018;5.
   Google Scholar
• Andrews WH, Jacobson A, T H. Bacteriological and analytical method. Salmonella Bacteriol Anal Method. 2009;1–21.
   Google Scholar
• Popoff MY, Bockemühl J, Gheesling LL. Supplement 2002 (no. 46) to the Kauffmann-White scheme. Res Microbiol. 2004;155:568–570. doi:10.1016/j.resmic.2004.04.00515313257
   PubMed Web of Science ®Google Scholar
• Dolinsky AL. M100 performance standards for antimicrobial susceptibility testing. Clin Lab Stand Ins. 2017; 8:0956–4624.
   Google Scholar
• Ellington MJ, Kistler J, Livermore DM, Woodford N. Multiplex PCR for rapid detection of genes encoding acquired metallo-β-lactamases [1]. J Antimicrob Chemother. 2007;59:321–322. doi:10.1093/jac/dkl48117185300
   PubMed Web of Science ®Google Scholar
• Chin CS, Alexander DH, Marks P, et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods. 2013;10:563–569. doi:10.1038/nmeth.247423644548
   PubMed Web of Science ®Google Scholar
• Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation. Genome Res. 2017;27:722–736. doi:10.1101/gr.215087.11628298431
   PubMed Web of Science ®Google Scholar
• Jensen LJ, Julien P, Kuhn M, et al. eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res. 2008;36:250–254. doi:10.1093/nar/gkm796
   PubMed Web of Science ®Google Scholar
• Finn RD, Bateman A, Clements J, et al. Pfam: the protein families database. Nucleic Acids Res. 2014;42:222–230. doi:10.1093/nar/gkt1223
   PubMed Web of Science ®Google Scholar
• Kanehisa M. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27–30. doi:10.1093/nar/28.1.2710592173
   PubMed Web of Science ®Google Scholar
• Bairoch A. The SWISS-PROT protein. Nucleic Acids Res. 1994;22:3578–3580.7937062
   PubMed Web of Science ®Google Scholar
• Salzberg SL, Deicher AL, Kasif S, White O. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 1998;26:544–548. doi:10.1093/nar/26.2.5449421513
   PubMed Web of Science ®Google Scholar
• Sullivan MJ, Petty NK, Beatson SA. Easyfig: A genome comparison visualizer. Bioinformatics. 2011;27:1009–1010. doi:10.1093/bioinformatics/btr03921278367
   PubMed Web of Science ®Google Scholar
• Carattoli A, Zankari E, Garciá-Fernández A, et al. In Silico detection and typing of plasmids using plasmidfinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother. 2014;58:3895–3903. doi:10.1128/AAC.02412-1424777092
   PubMed Web of Science ®Google Scholar
• Zankari E, Hasman H, Cosentino S, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012;67:2640–2644. doi:10.1093/jac/dks26122782487
   PubMed Web of Science ®Google Scholar
• Krishnaraju M, Kamatchi C, Jha AK, et al. Complete sequencing of an IncX3 plasmid carrying blaNDM-5 allele reveals an early stage in the dissemination of the blaNDM gene. Indian J Med Microbiol. 2015;33:30–38. doi:10.4103/0255-0857.14837325559999
   PubMed Web of Science ®Google Scholar
• Borowiak M, Szabo I, Baumann B, et al. VIM-1-producing Salmonella Infantis isolated from swine and minced pork meat in Germany. J Antimicrob Chemother. 2017;72:2131–2133. doi:10.1093/jac/dkx10128369508
   PubMed Web of Science ®Google Scholar
• Fischer J, Rodrìguez I, Schmoger S, et al. Salmonella enterica subsp. enterica producing VIM-1 carbapenemase isolated from livestock farms. J Antimicrob Chemother. 2013;68:478–480. doi:10.1093/jac/dks39323034713
   PubMed Web of Science ®Google Scholar
• Wang W, Baloch Z, Peng Z, et al. Genomic characterization of a large plasmid containing a bla NDM-1 gene carried on Salmonella enterica serovar Indiana C629 isolate from China. BMC Infect Dis. 2017;17:1–8. doi:10.1186/s12879-017-2515-528049444
   PubMed Web of Science ®Google Scholar
• Wang Z, He J, Li Q, et al. First detection of NDM-5-positive salmonella enterica serovar typhimurium isolated from retail pork in China. Microb Drug Resist. 2019;00:5–8.
   Google Scholar
• Wong MHY, Yan M, Chan EWC, Liu LZ, Kan B, Chen S. Expansion of salmonella enterica serovar typhimurium ST34 clone carrying multiple resistance determinants in China. Antimicrob Agents Chemother. 2013;57:4599–4601. doi:10.1128/AAC.01174-1323796940
   PubMed Web of Science ®Google Scholar
• Hornsey M, Phee L, Wareham DW. A novel variant, NDM-5, of the New Delhi metallo-β-lactamase in a multidrug-resistant Escherichia coli ST648 isolate recovered from a patient in the United Kingdom. Antimicrob Agents Chemother. 2011;55:5952–5954. doi:10.1128/AAC.05108-1121930874
   PubMed Web of Science ®Google Scholar
• Yang L, Hu X, Xu X, et al. Salmonella enterica serovar Typhimurium ST34 co-expressing bla NDM-5 and bla CTX-M-55 isolated in China. Emerg. Microbes Infect. 2017;6:e61–3.
   Google Scholar