Association of CRISPR/Cas System with the Drug Resistance in Klebsiella pneumoniae

References

• Frost LS, Leplae R, Summers AO, Toussaint A. Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol. 2005;3(9):722–732. doi:10.1038/nrmicro123516138100
   PubMed Web of Science ®Google Scholar
• Makarova KS, Haft DH, Barrangou R, et al. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol. 2011;9(6):467–477. doi:10.1038/nrmicro257721552286
   PubMed Web of Science ®Google Scholar
• Ostria-Hernandez ML, Sanchez-Vallejo CJ, Ibarra JA, Castro-Escarpulli G. Survey of clustered regularly interspaced short palindromic repeats and their associated Cas proteins (CRISPR/Cas) systems in multiple sequenced strains of Klebsiella pneumoniae. BMC Res Notes. 2015;8:332. doi:10.1186/s13104-015-1285-726238567
   PubMedGoogle Scholar
• Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct. 2006;1:7. doi:10.1186/1745-6150-1-716545108
   PubMed Web of Science ®Google Scholar
• Garneau JE, Dupuis ME, Villion M, et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature. 2010;468(7320):67–71. doi:10.1038/nature0952321048762
   PubMed Web of Science ®Google Scholar
• Palmer KL, Gilmore MS, Losick R. Multidrug-resistant enterococci lack CRISPR-cas. mBio. 2010;1(4):e00227–e00310. doi:10.1128/mBio.00227-1021060735
   PubMed Web of Science ®Google Scholar
• Hatoum-Aslan A, Marraffini LA. Impact of CRISPR immunity on the emergence and virulence of bacterial pathogens. Curr Opin Microbiol. 2014;17:82–90. doi:10.1016/j.mib.2013.12.00124581697
   PubMed Web of Science ®Google Scholar
• Louwen R, Staals RH, Endtz HP, van Baarlen P, van der Oost J. The role of CRISPR-Cas systems in virulence of pathogenic bacteria. Microbiol Mol Biol Rev. 2014;78(1):74–88. doi:10.1128/MMBR.00039-1324600041
   PubMed Web of Science ®Google Scholar
• Touchon M, Charpentier S, Pognard D, et al. Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology+. 2012;158(12):2997–3004.
   Google Scholar
• El Fertas-Aissani R, Messai Y, Alouache S, Bakour R. Virulence profiles and antibiotic susceptibility patterns of Klebsiella pneumoniae strains isolated from different clinical specimens. Pathol Biol. 2013;61(5):209–216. doi:10.1016/j.patbio.2012.10.00423218835
   PubMedGoogle Scholar
• Garcia-Fernandez A, Villa L, Carta C, et al. Klebsiella pneumoniae ST258 producing KPC-3 identified in italy carries novel plasmids and OmpK36/OmpK35 porin variants. Antimicrob Agents Chemother. 2012;56(4):2143–2145. doi:10.1128/AAC.05308-1122252815
   PubMed Web of Science ®Google Scholar
• Endimiani A, Carias LL, Hujer AM, et al. Presence of plasmid-mediated quinolone resistance in Klebsiella pneumoniae isolates possessing blaKPC in the United States. Antimicrob Agents Chemother. 2008;52(7):2680–2682. doi:10.1128/AAC.00158-0818426899
   PubMed Web of Science ®Google Scholar
• Perez-Perez FJ, Hanson ND. Detection of plasmid-mediated AmpC -lactamase genes in clinical isolates by using multiplex PCR. J Clin Microbiol. 2002;40(6):2153–2162. doi:10.1128/JCM.40.6.2153-2162.200212037080
   PubMed Web of Science ®Google Scholar
• Yu Y, Ji S, Chen Y, et al. Resistance of strains producing extended-spectrum β-lactamases and genotype distribution in China. J Infect. 2007;54(1):53–57. doi:10.1016/j.jinf.2006.01.01416533535
   PubMed Web of Science ®Google Scholar
• Mackow NA, Shen J, Adnan M, Khan AS, Fries BC, Diago-Navarro E. CRISPR-Cas influences the acquisition of antibiotic resistance in Klebsiella pneumoniae. PLoS One. 2019;14(11):e225131. doi:10.1371/journal.pone.0225131
   Web of Science ®Google Scholar
• Lin T, Pan Y, Hsieh P, Hsu C, Wu M, Wang J. Imipenem represses CRISPR-Cas interference of DNA acquisition through H-NS stimulation in Klebsiella pneumoniae. Sci Rep. 2016;6(1).
   Google Scholar
• Li H, Kao C, Lin W, et al. Characterization of CRISPR-Cas systems in clinical Klebsiella pneumoniae isolates uncovers its potential association with antibiotic susceptibility. Front Microbiol. 2018;9:1595.30061876
   PubMed Web of Science ®Google Scholar
• Kuno S, Yoshida T, Kaneko T, Sako Y. Intricate interactions between the bloom-forming cyanobacterium microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl Environ Microbiol. 2012;78(15):5353–5360. doi:10.1128/AEM.00626-1222636003
   PubMed Web of Science ®Google Scholar
• Delaney NF, Balenger S, Bonneaud C, et al. Correction: ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen. PLoS Genet. 2012;8:3. doi:10.1371/annotation/b5608bc6-aa54-40a7-b246-51fa7bc4a9db
   Web of Science ®Google Scholar
• Shen J, Lv L, Wang X, Xiu Z, Chen G. Comparative analysis of CRISPR-Cas systems in Klebsiella genomes. J Basic Microbiol. 2017;57(4):325–336. doi:10.1002/jobm.20160058928156004
   PubMed Web of Science ®Google Scholar
• Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J. 2011;30(7):1335–1342. doi:10.1038/emboj.2011.4121343909
   PubMed Web of Science ®Google Scholar
• Tang Y, Fu P, Zhou Y, et al. Absence of the type I-E CRISPR-Cas system in Klebsiella pneumoniae clonal complex 258 is associated with dissemination of IncF epidemic resistance plasmids in this clonal complex. J Antimicrob Chemother. 2020;75(4):890–895. doi:10.1093/jac/dkz53832003793
   PubMed Web of Science ®Google Scholar
• Wei DD, Wan LG, Yu Y, et al. Characterization of extended-spectrum beta-lactamase, carbapenemase, and plasmid quinolone determinants in Klebsiella pneumoniae isolates carrying distinct types of 16S rRNA methylase genes, and their association with mobile genetic elements. Microb Drug Resist. 2015;21(2):186–193. doi:10.1089/mdr.2014.007325469905
   PubMed Web of Science ®Google Scholar