https://orcid.org/0000-0003-0025-3609
References
- virological.org. Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations. ARTIC Network; 2020 [updated December 5 2020]. Available from: https://virological.org/t/preliminary-genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-the-uk-defined-by-a-novel-set-of-spike-mutations/563. Accessed November 30, 2021.
- cov-lineages.org; 2021 [updated November 30 2021. Available from: https://cov-lineages.org/global_report_B.1.1.7.html. Accessed November 30, 2021.
- Kupferschmidt K. Mutant coronavirus in the United Kingdom sets off alarms, but its importance remains unclear. Science. 2020. doi:10.1126/science.abg2626.
- European Centre for Disease Prevention and Control. Rapid increase of a SARS-CoV2 variant with multiple spike protein mutations observed in the United Kingdom. Stockholm: ECDC; 2020.
- Quick J, Grubaugh ND, Pullan ST, et al. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. Nat Protoc. 2017;12:1261–1276. doi:10.1038/nprot.2017.06628538739
- Hourdel V, Kwasiborski A, Balière C, et al. rapid genomic characterization of SARS-CoV-2 by direct amplicon-based sequencing through comparison of MinION and Illumina iSeq100TM system. Front Microbiol. 2020;11. doi:10.3389/fmicb.2020.571328
- Li J, Wang H, Mao L, et al. Rapid genomic characterization of SARS-CoV-2 viruses from clinical specimens using nanopore sequencing. Sci Rep. 2020;10(1):1–10. doi:10.1038/s41598-019-56847-431913322
- Freed NE, Vlková M, Faisal MB, Silander OK. Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding. Biol Methods Protoc. 2020;5(1):bpaa014. doi:10.1093/biomethods/bpaa01433029559
- Bull RA, Adikari TN, Ferguson JM, et al. Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis. Nat Commun. 2020;11:6272. doi:10.1038/s41467-020-20075-633298935
- Vilsker M, Moosa Y, Nooij S, et al. Genome Detective: an automated system for virus identification from high-throughput sequencing data. Bioinformatics. 2019;35(5):871–873. doi:10.1093/bioinformatics/bty69530124794
- Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A. RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics. 2019;35(21):4453–4455. doi:10.1093/bioinformatics/btz30531070718
- Public Health England. Investigation of novel SARS-CoV-2 variant, variant of concern 202012/01 technical briefing 2–28. London: PHE;December 2020. Available from: https://www.gov.uk/government/publications/investigation-of-novel-sars-cov-2-variant-variant-of-concern–20201201. Accessed November 23, 2021.
- Lauer SA, Grantz KH, Bi Q, et al. The incubation period of coronavirus disease 2019 (COVID-19) from publicly reported confirmed cases: estimation and application. Ann Intern Med. 2020;172(9):577–582. doi:10.7326/M20-050432150748