Characterization of E. coli Phylogroups Causing Catheter-Associated Urinary Tract Infection

References

• GajdácsM. The importance of reporting clinical and epidemiological data in urology: local experiences and insights from the international literature. Medicina. 2020;56(11):581. doi:10.3390/medicina56110581
   PubMed Web of Science ®Google Scholar
• SabirN, IkramA, ZamanG, et al. Bacterial biofilm-based catheter-associated urinary tract infections: causative pathogens and antibiotic resistance. Am J Infect Control. 2017;45:1101–1105. doi:10.1016/j.ajic.2017.05.00928629757
   PubMed Web of Science ®Google Scholar
• LeeJH, SubhadraB, SonY-J, et al. Phylogenetic group distributions, virulence factors and antimicrobial resistance properties of uropathogenic Escherichia coli strains isolated from patients with urinary tract infections in South Korea. Lett Appl Microbiol. 2015;62:84–90. doi:10.1111/lam.1251726518617
   PubMed Web of Science ®Google Scholar
• WilesTJ, KulesusRR, MulveyMA. Origins and virulence mechanisms of uropathogenic Escherichia coli. Exp Mol Pathol. 2008;85:11–19. doi:10.1016/j.yexmp.2008.03.00718482721
   PubMed Web of Science ®Google Scholar
• HackerJ, Blum-OehlerG, MuhldorferI, TschapeH. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol Microbiol. 1997;23(6):1089–1097. doi:10.1046/j.1365-2958.1997.3101672.x9106201
   PubMed Web of Science ®Google Scholar
• Gal-MorO, FinlayBB. Pathogenicity islands: a molecular toolbox for bacterial virulence. Cell Microbiol. 2006;8:1707–1719. doi:10.1111/j.1462-5822.2006.00794.x16939533
   PubMed Web of Science ®Google Scholar
• FiroozehF, Soleimani-MoorchekhortiL, ZibaeiM. Evaluation of pathogenicity islands in uropathogenic Escherichia coli isolated from patients with urinary catheters. J Infect Dev Ctries. 2017;11:557–562. doi:10.3855/jidc.866031071065
   PubMed Web of Science ®Google Scholar
• OstblomA, AdlerberthI, WoldAE, NowrouzianFL. Pathogenicity island markers, virulence determinants malX and usp, and the capacity of Escherichia coli to persist in infants’ commensal microbiotas. Appl Environ Microbiol. 2011;77(7):2303–2308. doi:10.1128/AEM.02405-1021317254
   PubMed Web of Science ®Google Scholar
• GazalLE, Puño-SarmientoJJ, MedeirosLP, et al. Presence of pathogenicity islands and virulence genes of extraintestinal pathogenic Escherichia coli (ExPEC) in isolates from avian organic fertilizer. Poult Sci. 2015;94(12):3025–3033. doi:10.3382/ps/pev27826476087
   PubMed Web of Science ®Google Scholar
• SameiA, HaghiF, ZeighamiH. Distribution of pathogenicity island markers in commensal and uropathogenic Escherichia coli isolates. Folia Microbiol. 2016;61(3):261–268. doi:10.1007/s12223-015-0433-826563230
   PubMed Web of Science ®Google Scholar
• ClermontO, BonacorsiS, BingenE. Rapid and simple determination of the Escherichia coli Phylogenetic Group. Appl Environ Microbiol. 2000;66(10):4555–4558. doi:10.1128/AEM.66.10.4555-4558.200011010916
   PubMed Web of Science ®Google Scholar
• ClermontO, ChristensonJK, DenamurE, GordonDM. The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ Microbiol Rep. 2013;5(1):58–65. doi:10.1111/1758-2229.1201923757131
   PubMed Web of Science ®Google Scholar
• HoranTC, AndrusM, DudeckMA. CDC/NHSN surveillance definition of health care-associated infection and criteria for specific types of infections in the acute care setting. Am J Infect Control. 2008;36:309–332. doi:10.1016/j.ajic.2008.03.00218538699
   PubMed Web of Science ®Google Scholar
• KabugoD, KizitoS, AshokDD, et al. Factors associated with community-acquired urinary tract infections among adults attending assessment centre, Mulago hospital Uganda. Afr Health Sci. 2016;16(4):1131–1142. doi:10.4314/ahs.v16i4.3128479906
   PubMed Web of Science ®Google Scholar
• GajdácsM, ÁbrókM, LázárA, BuriánK. Differential epidemiology and antibiotic resistance of lactose-fermenting and non-fermenting Escherichia coli: is it just a matter of taste?Biol Futura. 2020;71(1–2):175–182. doi:10.1007/s42977-020-00016-6
   Google Scholar
• ColleeJG, MarmionBP, FraserAG, SimmonsA, (editors). Mackie and McCartney Practical Medical Microbiology. 14th ed. Edinburgh: Churchill Livingstone; 2006.
   Google Scholar
• HootonTM, BradleySF, CardenasDD, et al. Diagnosis, prevention, and treatment of catheter associated urinary tract infection in adults: 2009 International Clinical Practice Guidelines from the Infectious Diseases Society of America. Clin Infect Dis. 2010;50:625–663.20175247
   PubMed Web of Science ®Google Scholar
• WaynePA. Clinical and Laboratory Standards Institute (CLSI). Performance standards for antimicrobial susceptibility testing. 25th informational supplement; 2015:M100–S25.
   Google Scholar
• MagiorakosAP, SrinivasanA, CareyRB, et al. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. Clin Microbiol Infect. 2012;18:268–281. doi:10.1111/j.1469-0691.2011.03570.x21793988
   PubMed Web of Science ®Google Scholar
• PompilioA, CrocettaV, SaviniV, et al. Phylogenetic relationships, biofilm formation, motility, antibiotic resistance and extended virulence genotypes among Escherichia coli strains from women with community-onset primitive acute pyelonephritis. PLoS One. 2018;13(5):e0196260. doi:10.1371/journal.pone.019626029758033
   PubMed Web of Science ®Google Scholar
• SabateM, MorenoE, PerezT, AndreuA, PratsG. Pathogenicity island markers in commensal and uropathogenic Escherichia coli isolates. Clin Microbiol Infect. 2006;12(9):880–886. doi:10.1111/j.1469-0691.2006.01461.x16882293
   PubMed Web of Science ®Google Scholar
• DadiBR, AbebeT, ZhangL, MihretA, AbebeW, AmogneW. Distribution of virulence genes and phylogenetics of uropathogenic Escherichia coli among urinary tract infection patients in Addis Ababa, Ethiopia. BMC Infect Dis. 2020;20:108. doi:10.1186/s12879-020-4844-z32033541
   PubMed Web of Science ®Google Scholar
• GawadWE, HelmyOM, TawakkolWM, HashemAM. Antimicrobial resistance, biofilm formation, and phylogenetic grouping of uropathogenic Escherichia coli isolates in Egypt: the role of efflux pump-mediated resistance. Jundishapur J Microbiol. 2018;11(2):e14444.
   Web of Science ®Google Scholar
• KarigoudarRM, KarigoudarMH, WavareSM, MangalgiSS. Detection of biofilm among uropathogenic Escherichia coli and its correlation with antibiotic resistance pattern. J Lab Physicians. 2019;11:17–22. doi:10.4103/JLP.JLP_98_1830983797
   PubMed Web of Science ®Google Scholar
• TaheriM, SalehM, NematiAH, et al. Antibiotic resistance pattern and phylogenetic groups of the uropathogenic Escherichia coli isolates recovered from the urinary catheters of the hospitalized patients. J Med Microbiol Infect Dis. 2016;4:76–82.
   Google Scholar
• GajdácsM, ÁbrókM, LázárA, BuriánK. Comparative epidemiology and resistance trends of common urinary pathogens in a tertiary-care hospital: a 10-Year surveillance study. Medicina. 2019;55:356. doi:10.3390/medicina55070356
   Web of Science ®Google Scholar
• SaiedT, ElkholyA, HafezSF, et al. Antimicrobial resistance in pathogens causing nosocomial bloodstream infections in university hospitals in Egypt. Am J Infect Control. 2011;39:e61–e65. doi:10.1016/j.ajic.2011.04.00921835504
   PubMed Web of Science ®Google Scholar
• Abdel-MoatyMM, MohamedWS, Abdel-AllSM, El-HendawyHH. Prevalence and molecular epidemiology of extended spectrum β-lactamase producing Escherichia coli from hospital and community settings in Egypt. J Appl Pharm Sci. 2016;6:1042–1047.
   Google Scholar
• MalekzadeganY, KhasheiR, Ebrahim-SaraieHS, JahanabadiZ. Distribution of virulence genes and their association with antimicrobial resistance among uropathogenic Escherichia coli isolates from Iranian patients. BMC Infect Dis. 2018;18:572. doi:10.1186/s12879-018-3467-030442101
   PubMed Web of Science ®Google Scholar
• MunkhdelgerY, GunregjavN, DorjpurevA, JuniichiroN, SarantuyaJ. Detection of virulence genes, phylogenetic group and antibiotic resistance of uropathogenic Escherichia coli in Mongolia. J Infect Dev Ctries. 2017;11(1):51–57. doi:10.3855/jidc.790328141590
   PubMed Web of Science ®Google Scholar
• BardoloiV, Yogeesha BabuKV. Comparative study of isolates from community-acquired and catheter-associated urinary tract infections with reference to biofilm-producing property, antibiotic sensitivity and multi-drug resistance. J Med Microbiol. 2017;66:927–936. doi:10.1099/jmm.0.00052528703700
   PubMed Web of Science ®Google Scholar
• GajdácsM, BátoriZ, ÁbrókM, LázárA, BuriánK. Characterization of resistance in Gram-negative urinary isolates using existing and novel indicators of clinical relevance: a 10-year data analysis. Life. 2020;10:16. doi:10.3390/life10020016
   Google Scholar
• BehzadiP, UrbánE, GajdácsM. Association between biofilm-production and antibiotic resistance in uropathogenic Escherichia coli (UPEC): an in vitro study. Diseases. 2020;8:17. doi:10.3390/diseases8020017
   Web of Science ®Google Scholar
• PicardB, GarciaJS, GouriouS, DuriezP, BrahimiN, BingenE. The link between phylogeny and virulence in Escherichia coli extraintestinal infection. Infect Immun. 2000;67:546–553. doi:10.1128/IAI.67.2.546-553.1999
   Web of Science ®Google Scholar
• KhairyRM, MohamedES, Abdel GhanyHM, AbdelrahimSS. Phylogenic classification and virulence genes profiles of uropathogenic E. coli and diarrhegenic E. coli strains isolated from community acquired infections. PLoS One. 2019;14(9):e0222441. doi:10.1371/journal.pone.022244131513642
   PubMed Web of Science ®Google Scholar
• KotB, WichaJ, GruzewskaA, PiechotaM, WolskaK, ObrebskaM. Virulence factors, biofilm-forming ability, and antimicrobial resistance of urinary Escherichia coli strains isolated from hospitalized patients. Turk J Med Sci. 2016;46:1908–1914. doi:10.3906/sag-1508-10528081347
   PubMed Web of Science ®Google Scholar
• MoezaNM, MashoufaRY, SedighibI, ShokoohizadehaL, TaheriaM. Phylogroup classification and investigation the relationships between phylogroups and antibiotic resistance patterns of uropathogenic E. coli isolated from pediatric urinary tract infection. Gene Rep. 2020;20:100758. doi:10.1016/j.genrep.2020.100758
   Web of Science ®Google Scholar
• GaoQ, ZhangD, YeZ, et al. Virulence traits and pathogenicity of uropathogenic Escherichia coli isolates with common and uncommon O serotypes. Microb Pathog. 2017;104:217e224. doi:10.1016/j.micpath.2017.01.02728104383
   PubMed Web of Science ®Google Scholar
• TongY, SunS, ChiY. Virulence genotype and phylogenetic groups in relation to Chinese herb resistance among Escherichia coli from patients with acute pyelonephritis. Afr J Tradit Complement Altern Med. 2014;11:234–238. doi:10.4314/ajtcam.v11i3.3325371588
   PubMedGoogle Scholar
• GrudeN, Potaturkina-NesterovaNI, JenkinsA, et al. Comparison of phylogenetic group, virulence factors and antibiotic resistance in Russian and Norwegian isolates of Escherichia coli from urinary tract infection. Clin Microbiol Infect. 2007;13:208–211. doi:10.1111/j.1469-0691.2006.01584.x17328737
   PubMed Web of Science ®Google Scholar
• AdibN, GhanbarpourR, SolatzadehH, AlizadeH. Antibiotic resistance profile and virulence genes of uropathogenic Escherichia coli isolates in relation to phylogeny. Trop Biomed. 2014;31(1):17–25.24862040
   PubMed Web of Science ®Google Scholar
• Paniagua-ContrerasGL, Monroy-PérezE, BautistaA, et al. Multiple antibiotic resistances and virulence markers of uropathogenic Escherichia coli from Mexico. Pathog Glob Health. 2018;112(8):415–420. doi:10.1080/20477724.2018.154754230433859
   PubMed Web of Science ®Google Scholar
• DerakhshandehA, FirouziR, MotamedifarM, et al. Virulence characteristics and antibiotic resistance patterns among various phylogenetic groups of uropathogenic Escherichia coli isolates. Jpn J Infect Dis. 2015;68:428–431. doi:10.7883/yoken.JJID.2014.32725866111
   PubMed Web of Science ®Google Scholar
• NavidiniaM, PeerayehSN, FallahF, BakhshiB, SajadiniaRS. Phylogenetic grouping and pathotypic comparison of urine and fecal Escherichia coli isolates from children with urinary tract infection. Braz J Microbiol. 2014;45(2):509–514. doi:10.1590/S1517-8382201400020001925242935
   PubMed Web of Science ®Google Scholar
• TewawongN, KowabootS, PimainogY, WatanagulN, ThongmeeT, PoovorawanY. Distribution of phylogenetic groups, adhesin genes, biofilm formation and antimicrobial resistance of uropathogenic Escherichia coli isolated from hospitalized patients in Thailand. PeerJ. 2020;8:e10453. doi:10.7717/peerj.1045333344087
   PubMed Web of Science ®Google Scholar
• NajafiA, HasanpourM, AskaryA, AziemzadehM, HashemiN. Distribution of pathogenicity island markers and virulence factors in new phylogenetic groups of uropathogenic Escherichia coli isolates. Folia Microbiol (Praha). 2018;63:335–343. doi:10.1007/s12223-017-0570-329199378
   PubMed Web of Science ®Google Scholar
• PeerayehSN, NavidiniaM, FallahF, BakhshiB, JamaliJ. Pathogenicity determinants and epidemiology of uropathogenic E. coli (UPEC) strains isolated from children with urinary tract infection (UTI) to define distinct pathotypes. Biomed Res. 2018;29(10):2035–2043. doi:10.4066/biomedicalresearch.29-17-1591
   Google Scholar