Phenotypic and Genotypic Characterization of Carbapenem-Resistant Enterobacteriaceae Recovered from a Single Hospital in China, 2013 to 2017

References

• Bell JM, Lubian AF, Partridge S, et al. Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Sepsis Outcome Programme (GNSOP) annual report 2019. Commun Dis Intell. 2020;44. doi:10.33321/cdi.2020.44.80
   Web of Science ®Google Scholar
• Gajdács M, Albericio F. Antibiotic resistance: from the bench to patients. Antibiotics. 2019;8:8–11. doi:10.3390/antibiotics8030129
   Web of Science ®Google Scholar
• Tamma PD, Han JH, Rock C, et al. Carbapenem therapy is associated with improved survival compared to piperacillin-tazobactam for patients with ESBL Bacteremia, for the Antibacterial Resistance Leadership Group. at University of Waterloo on January 21. Clin Infect Dis. 2015;60(9):1–21. doi:10.1093/cid/ciu714
   Web of Science ®Google Scholar
• Gupta N, Limbago BM, Patel JB, Kallen AJ. Carbapenem-resistant Enterobacteriaceae: epidemiology and prevention. Clin Infect Dis. 2011;53:60–67. doi:10.1093/cid/cir202
   PubMed Web of Science ®Google Scholar
• Schwaber MJ, Carmeli Y. National Center for Infection Control, Ministry of Health, 6 Weizmann St. Israel ([email protected]) (Reprinted). JAMA. 2008;64239:2911.
   Google Scholar
• Walther-Rasmussen J, Høiby N. OXA-type carbapenemases. J Antimicrob Chemother. 2006;57:373–383. doi:10.1093/jac/dki482
   PubMed Web of Science ®Google Scholar
• Kumarasamy KK, Toleman MA, Walsh TR, et al. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis. 2010;10:597–602. doi:10.1016/S1473-3099(10)70143-2
   PubMed Web of Science ®Google Scholar
• Nordmann P, Dortet L, Poirel L. Carbapenem resistance in Enterobacteriaceae: here is the storm! Trends Mol Med. 2012;18:263–272. doi:10.1016/j.molmed.2012.03.003
   PubMed Web of Science ®Google Scholar
• Partridge SR, Kwong SM, Firth N, Jensen SO. Mobile genetic elements associated with antimicrobial resistance. Clin Microbiol Rev. 2018;31:1–61. doi:10.1128/CMR.00088-17
   Web of Science ®Google Scholar
• Leitner E, Zarfel G, Luxner J, et al. Contaminated handwashing sinks as the source of a clonal outbreak of KPC-2-producing Klebsiella oxytoca on a hematology ward. Antimicrob Agents Chemother. 2015;59:714–716. doi:10.1128/AAC.04306-14
   PubMed Web of Science ®Google Scholar
• Xiao SZ, Wang S, Wu WM, et al. The resistance phenotype and molecular epidemiology of Klebsiella pneumoniae in bloodstream infections in Shanghai, China, 2012–2015. Front Microbiol. 2017;8:1–8. doi:10.3389/fmicb.2017.00250
   Web of Science ®Google Scholar
• Wang Q, Wang X, Wang J, et al. Phenotypic and Genotypic Characterization of Carbapenem-resistant Enterobacteriaceae: data from a Longitudinal Large-scale CRE Study in China (2012–2016). Clin Infect Dis. 2018;67:S196–S205. doi:10.1093/cid/ciy660
   PubMed Web of Science ®Google Scholar
• Nordmann P, Poirel L. The difficult-to-control spread of carbapenemase producers among Enterobacteriaceae worldwide. Clin Microbiol Infect. 2014;20:821–830. doi:10.1111/1469-0691.12719
   PubMed Web of Science ®Google Scholar
• Bonomo RA, Burd EM, Conly J, et al. Carbapenemase-producing organisms: a global scourge. Clin Infect Dis. 2018;66:1290–1297. doi:10.1093/cid/cix893
   PubMed Web of Science ®Google Scholar
• Miriagou V, Cornaglia G, Edelstein M, Galani I, Giske CG, Gniadkowski M. Acquired carbapenemases in Gram-negative bacterial pathogens: detection and surveillance issues. Clin Microbiol Infect. 2010;16(2):112–122. doi:10.1111/j.1469-0691.2009.03116.x
   PubMed Web of Science ®Google Scholar
• Dolinsky AL. A consumer complaint framework with resulting strategies. J Serv Market. 1994;8(3):27–39. doi:10.1108/08876049410065598
   Google Scholar
• Sequencing S. The school of natural sciences presents applied math seminar: sPAdes: a new genome assembly algorithm 2013; 2013.
   Google Scholar
• Aziz RK, Bartels D, Best A, et al. The RAST server: rapid annotations using subsystems technology. BMC Genom. 2008;9:1–15. doi:10.1186/1471-2164-9-75
   PubMed Web of Science ®Google Scholar
• Treangen TJ, Ondov BD, Koren S, Phillippy AM. The harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genom Biol. 2014;15:1–15. doi:10.1186/s13059-014-0524-x
   Web of Science ®Google Scholar
• Cheng L, Connor TR, Sirén J, Aanensen DM, Corander J. Hierarchical and spatially explicit clustering of DNA sequences with BAPS software. Mol Biol Evolut. 2013;30:1224–1228. doi:10.1093/molbev/mst028
   PubMed Web of Science ®Google Scholar
• Nascimento M, Sousa A, Ramirez M, Francisco AP, Carriço JA, Vaz C. PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinformatics. 2017;33:128–129. doi:10.1093/bioinformatics/btw582
   PubMed Web of Science ®Google Scholar
• Papp-Wallace KM, Endimiani A, Taracila MA, Bonomo RA. Carbapenems: past, present, and future. Antimicrob Agents Chemother. 2011;55:4943–4960. doi:10.1128/AAC.00296-11
   PubMed Web of Science ®Google Scholar
• Borer A, Saidel-Odes L, Riesenberg K, et al. Attributable mortality rate for carbapenem-resistant Klebsiella pneumoniae bacteremia. Infect Control Hospital Epidemiol. 2009;30:972–976. doi:10.1086/605922
   PubMed Web of Science ®Google Scholar
• Tamma PD, Goodman KE, Harris AD, et al. Comparing the outcomes of patients with carbapenemase-producing and non-carbapenemase-producing carbapenem-resistant Enterobacteriaceae bacteremia. Clin Infect Dis. 2017;64:257–264. doi:10.1093/cid/ciw741
   PubMed Web of Science ®Google Scholar
• Yu J, Tan K, Rong Z, et al. Nosocomial outbreak of KPC-2- and NDM-1-producing Klebsiella pneumoniae in a neonatal ward: a retrospective study. BMC Infect Dis. 2016;16:1–6. doi:10.1186/s12879-016-1870-y
   Web of Science ®Google Scholar
• Patel G, Huprikar S, Factor SH, Jenkins SG, Calfee DP. Outcomes of carbapenem-resistant Klebsiella pneumoniae infection and the impact of antimicrobial and adjunctive therapies. Infect Control Hospital Epidemiol. 2008;29:1099–1106. doi:10.1086/592412
   PubMed Web of Science ®Google Scholar
• Akturk H, Sutcu M, Somer A, et al. Carbapenem-resistant Klebsiella pneumoniae colonization in pediatric and neonatal intensive care units: risk factors for progression to infection. Brazilian J Infect Dis. 2016;20:134–140. doi:10.1016/j.bjid.2015.12.004
   PubMed Web of Science ®Google Scholar
• Zhang Y, Guo LY, Song WQ, Wang Y, Dong F, Liu G. Risk factors for carbapenem-resistant K. pneumoniae bloodstream infection and predictors of mortality in Chinese paediatric patients. BMC Infect Dis. 2018;18:1–10. doi:10.1186/s12879-018-3160-3
   PubMed Web of Science ®Google Scholar
• Khan AU, Maryam L, Zarrilli R. Structure, genetics and worldwide spread of New Delhi Metallo-β-lactamase (NDM): a threat to public health. BMC Microbiol. 2017;17:1–12.
   PubMed Web of Science ®Google Scholar
• Chu YW, Afzal-Shah M, Houang ETS, et al. IMP-4, a novel metallo-β-lactamase from nosocomial Acinetobacter spp. Collected in Hong Kong between 1994 and 1998. Antimicrob Agents Chemother. 2001;45:710–714. doi:10.1128/AAC.45.3.710-714.2001
   PubMed Web of Science ®Google Scholar
• Sidjabat HE, Townell N, Nimmo GR, et al. Dominance of IMP-4-producing Enterobacter cloacae among carbapenemase-producing Enterobacteriaceae in Australia. Antimicrob Agents Chemother. 2015;59:4059–4066. doi:10.1128/AAC.04378-14
   Web of Science ®Google Scholar
• Liu W, Dong H, Yan T, et al. Molecular characterization of blaIMP–4-carrying enterobacterales in Henan Province of China. Front Microbiol. 2021;12:1–8.
   Web of Science ®Google Scholar
• Rodriguez-Baño J, Gutiérrez-Gutiérrez B, Machuca I, Pascual A. Treatment of Infections caused by extended-spectrum-beta. Clin Microbiol Rev. 2018;31:1–42. doi:10.1128/CMR.00079-17
   Web of Science ®Google Scholar
• Cienfuegos-gallet AV, Zhou Y, Ai W, Kreiswirth BN, Yu F, Chen L. Multicenter genomic analysis of carbapenem-resistant Klebsiella pneumoniae from Bacteremia in China. Microbiol Spectr. 2022;10(2):e02290–21.
   Web of Science ®Google Scholar
• Roberts LW, Catchpoole E, Jennison AV, et al. Genomic analysis of carbapenemase-producing Enterobacteriaceae in Queensland reveals widespread transmission of blaimp-4 on an incHI2 plasmid. Microbial Genom. 2020;6. doi:10.1099/mgen.0.000321
   Web of Science ®Google Scholar
• Dallman TJ, Byrne L, Ashton PM, et al. Whole-genome sequencing for national surveillance of Shiga Toxin-Producing Escherichia coli O157. Clin Infect Dise. 2015;61:305–312. doi:10.1093/cid/civ318
   PubMed Web of Science ®Google Scholar
• Moura A, Criscuolo A, Pouseele H, et al. epidemiological surveillance of Listeria monocytogenes. Nature Microbiol. 2016;2:1–10.
   Web of Science ®Google Scholar
• David S, Reuter S, Harris SR, et al. Europe PMC Funders Group Europe PMC Funders Author Manuscripts Europe PMC Funders Author Manuscripts Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature. 2020;4:1919–1929.
   Web of Science ®Google Scholar
• Zhang R, Liu L, Zhou H, et al. Nationwide Surveillance of Clinical Carbapenem-resistant Enterobacteriaceae (CRE) strains in China. EBioMedicine. 2017;19:98–106. doi:10.1016/j.ebiom.2017.04.032
   PubMed Web of Science ®Google Scholar
• Kitchel B, Rasheed JK, Patel JB, et al. Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258. Antimicrob Agents Chemother. 2009;53:3365–3370. doi:10.1128/AAC.00126-09
   PubMed Web of Science ®Google Scholar
• Acman M, Wang R, van Dorp L, et al. Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM. Nature Commun. 2022;13:1–13. doi:10.1038/s41467-022-28819-2
   Web of Science ®Google Scholar
• Wang Y, Tong MK, Chow KH, et al. Occurrence of highly conjugative IncX3 epidemic plasmid carrying blaNDM in Enterobacteriaceae isolates in geographically widespread areas. Front Microbiol. 2018;9:1–8. doi:10.3389/fmicb.2018.00001
   PubMed Web of Science ®Google Scholar
• Wang Y, Lo WU, Lai RWM, et al. IncN ST7 epidemic plasmid carrying blaIMP-4 in Enterobacteriaceae isolates with epidemiological links to multiple geographical areas in China. J Antimicrob Chemother. 2017;72:99–103. doi:10.1093/jac/dkw353
   PubMed Web of Science ®Google Scholar
• Fernández-García OA, González-Lara MF, Villanueva-Reza M, et al. Outbreak of NDM-1-producing Escherichia coli in a coronavirus disease 2019 intensive care unit in a Mexican Tertiary Care Center. Microbiol Spectr. 2022;10:1–6. doi:10.1128/spectrum.02015-21
   Web of Science ®Google Scholar