179
Views
2
CrossRef citations to date
0
Altmetric
Original Research

Biological Function and Clinical Value of VPS13A in Pan-Cancer Based on Bioinformatics Analysis

& ORCID Icon
Pages 6825-6838 | Published online: 16 Oct 2021

References

  • Blum A, Wang P, Zenklusen JC. SnapShot: TCGA-Analyzed Tumors. Cell. 2018;173(2):530. doi:10.1016/j.cell.2018.03.059
  • Zhang Z, Li H, Jiang S, et al. A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data. Brief Bioinform. 2019;20(4):1524–1541. doi:10.1093/bib/bby023
  • Yeshaw WM, van der Zwaag M, Pinto F, et al. Human VPS13A is associated with multiple organelles and influences mitochondrial morphology and lipid droplet motility. Elife. 2019;8:e43561. doi:10.7554/eLife.43561
  • Urs AB, Augustine J, Khan AA. Chorea-acanthocytosis: a case report with review of oral manifestations. Contemp Clin Dent. 2021;12(1):73–75. doi:10.4103/ccd.ccd_207_20
  • Wu YY. Steap1 Regulation of Tumor Genesis and Chemotherapy Resistance During Peritoneal Metastasis of Gastric Cancer. Jilin University; 2019.
  • Zhang Q. Study on the reverse mechanism of LIPG/ RS9958734 multidrug resistance in ovarian cancer based on CRISPR/Cas9. Guangxi Med Univ. 2019;1:5487.
  • Xu M, Li Y, Li W, et al. Immune and Stroma Related Genes in Breast Cancer: a Comprehensive Analysis of Tumor Microenvironment Based on the Cancer Genome Atlas (TCGA) Database. Front Med. 2020;7:64. doi:10.3389/fmed.2020.00064
  • Tang Z, Kang B, Li C, Chen T, Zhang Z. GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis. Nucleic Acids Res. 2019;47(W1):W556–W560. doi:10.1093/nar/gkz430
  • He C, Hua X, Sun S, Li S, Wang J, Huang X. Integrated Bioinformatic Analysis of SARS-CoV-2 Infection Related Genes ACE2, BSG and TMPRSS2 in Aerodigestive Cancers. J Inflamm Res. 2021;14:791–802. doi:10.2147/JIR.S300127
  • Chandrashekar DS, Bashel B, Balasubramanya SAH, et al. UALCAN: a portal for facilitating tumor subgroup gene expression and survival analyses. Neoplasia. 2017;19(8):649–658. doi:10.1016/j.neo.2017.05.002
  • Thomas SN, Friedrich B, Schnaubelt M, Chan DW, Zhang H, Aebersold R. Orthogonal proteomic platforms and their implications for the stable classification of high-grade serous ovarian cancer subtypes. iScience. 2020;23(6):101079. doi:10.1016/j.isci.2020.101079
  • Yang J, Li H, Hu S, Zhou Y. ACE2 correlated with immune infiltration serves as a prognostic biomarker in endometrial carcinoma and renal papillary cell carcinoma: implication for COVID-19. Aging. 2020;12(8):6518–6535. doi:10.18632/aging.103100
  • Guo L, Li X, Liu R, Chen Y, Ren C, Du S. TOX correlates with prognosis, immune infiltration, and T cells exhaustion in lung adenocarcinoma. Cancer Med. 2020;9(18):6694–6709. doi:10.1002/cam4.3324
  • Wu P, Heins ZJ, Muller JT, et al. Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal. Mol Cell Proteomics. 2019;18(9):1893–1898. doi:10.1074/mcp
  • Unberath P, Knell C, Prokosch HU, Christoph J. Developing new analysis functions for a translational research platform: extending the cbioportal for cancer genomics. Stud Health Technol Inform. 2019;258:46–50.
  • Ou Q, Yu Y, Li A, et al. Association of survival and genomic mutation signature with immunotherapy in patients with hepatocellular carcinoma. Ann Transl Med. 2020;8(5):230. doi:10.21037/atm.2020.01.32
  • Li T, Fu J, Zeng Z, et al. TIMER2.0 for analysis of tumor-infiltrating immune cells. Nucleic Acids Res. 2020;48(W1):W509–W514. doi:10.1093/nar/gkaa407
  • Xu ZY, Zhao M, Chen W, et al. Analysis of prognostic genes in the tumor microenvironment of lung adenocarcinoma. Peer J. 2020;8:e9530. doi:10.7717/peerj.9530
  • Szklarczyk D, Gable AL, Nastou KC, et al. The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Res. 2021;49(D1):D605–D612. doi:10.1093/nar/gkaa1074
  • Gui Y, Liu X, Wang C, Overexpressing YP. PTTG family genes predict poor prognosis in kidney renal clear cell carcinoma. World J Surg Oncol. 2021;19(1):111. doi:10.1186/s12957-021-02225-2
  • Zheng R, Zhu HL, Hu BR, Ruan XJ, Cai HJ. Identification of APEX2 as an oncogene in liver cancer. World J Clin Cases. 2020;8(14):2917–2929. doi:10.12998/wjcc.v8.i14.2917
  • Li L, Li Y, Guo Y, Li J, Jin H. Potential roles of PBRM1 on immune infiltration in cholangiocarcinoma. Int J Clin Exp Pathol. 2020;13(10):2661–2676.
  • Cho J, Gao S, Stein L, Sternberg PW. Vennter - An interactive analysis tool for WormBase interaction data using Venn diagrams. MicroPubl Biol. 2020;2020. doi:10.17912/micropub.biology.000258
  • Kanehisa M, Sato Y. KEGG Mapper for inferring cellular functions from protein sequences. Protein Sci. 2020;29(1):28–35. doi:10.1002/pro.3711
  • Liang Y, Zhang C, Dai DQ. Identification of differentially expressed genes regulated by methylation in colon cancer based on bioinformatics analysis. World J Gastroenterol. 2019;25(26):3392–3407. doi:10.3748/wjg.v25.i26.3392
  • Liu S, Xie X, Lei H, Zou B, Xie L. Identification of Key circRNAs/lncRNAs/miRNAs/mRNAs and Pathways in Preeclampsia Using Bioinformatics Analysis. Med Sci Monit. 2019;25:1679–1693. doi:10.12659/MSM.912801
  • Sepulveda JL. Using R and Bioconductor in Clinical Genomics and Transcriptomics. J Mol Diagn. 2020;22(1):3–20. doi:10.1016/j.jmoldx.2019.08.006
  • Huang S, Zheng F, Liu L, et al. Integrated proteome and phosphoproteome analyses of peripheral blood mononuclear cells in primary Sjögren syndrome patients. Aging. 2020;13(1):1071–1095. doi:10.18632/aging.202233
  • Yu K, Zhang Q, Liu Z, et al. qPhos: a database of protein phosphorylation dynamics in humans. Nucleic Acids Res. 2019;47(D1):D451–D458. doi:10.1093/nar/gky1052
  • Paulo JA, Gaun A, Gygi SP. Global analysis of protein expression and phosphorylation levels in nicotine-treated pancreatic stellate cells. J Proteome Res. 2015;14(10):4246–4256. doi:10.1021/acs.jproteome.5b00398
  • Arneth B. Tumor Microenvironment. Medicina. 2019;56(1):15. doi:10.3390/medicina56010015
  • Hinshaw DC, Shevde LA. The Tumor Microenvironment Innately Modulates Cancer Progression. Cancer Res. 2019;79(18):4557–4566. doi:10.1158/0008-5472.CAN-18-3962
  • RRibeiro Franco PI, Rodrigues AP, de Menezes LB, Pacheco Miguel M. Tumor microenvironment components: allies of cancer progression. Pathol Res Pract. 2020;216(1):152729. doi:10.1016/j.prp.2019.152729
  • Wang SS, Liu W, Ly D, Xu H, Qu L, Tumor-infiltrating ZL. B cells: their role and application in anti-tumor immunity in lung cancer. Cell Mol Immunol. 2019;16(1):6–18. doi:10.1038/s41423-018-0027-x
  • Marta T, Luca S, Fabio C. Fibroblasts in the Tumor Microenvironment. Adv Exp Med Biol. 2020;1234:15–29.
  • Truffi M, Sorrentino L, Corsi F. Fibroblasts in the Tumor Microenvironment. Adv Exp Med Biol. 2020;1234:15–29. doi:10.1007/978-3-030-37184-5_2
  • Tan EHN, Tang BL. Rab7a and Mitophagosome Formation. Cells. 2019;8(3):224. doi:10.3390/cells8030224
  • Yeshaw WM, van der Zwaag M, Pinto F, et al. Human VPS13A is associated with multiple organelles and influences mitochondrial morphology and lipid droplet motility. Elife. 2019;8:e4356. doi:10.7554/eLife.43561
  • Muñoz-Braceras S, Tornero-écija AR, Vincent O, Escalante R. VPS13A is closely associated with mitochondria and is required for efficient lysosomal degradation. Dis Model Mech. 2019;12(2):dmm036681. doi:10.1242/dmm.036681
  • Lang Lang F, Pelzl L, Schöls L, et al. Neurons, Erythrocytes and Beyond -The Diverse Functions of Chorein. Neurosignals. 2017;25(1):117–126. doi:10.1159/000485457