341
Views
9
CrossRef citations to date
0
Altmetric
Original Research

Fungal Isolates of the Respiratory Tract in Symptomatic Patients Hospitalized in Pulmonary Units: A Mycological and Molecular Epidemiologic Study

, , , , ORCID Icon, ORCID Icon, , ORCID Icon, & ORCID Icon show all
Pages 661-669 | Published online: 22 Jul 2020

References

  • Fauci AS, Morens DM. The perpetual challenge of infectious diseases. N Engl J Med. 2012;366(5):454–461. doi:10.1056/NEJMra1108296
  • Brown GD, Denning DW, Gow NA, et al. Hidden killers: human fungal diseases. Sci Transl Med. 2012;4(165):165rv13. doi:10.1126/scitranslmed.3004404
  • Ben-Ami R, Lewis RE, Kontoyiannis DP. Invasive mould diseases in the setting of hematopoietic cell transplantation: current trends and new challenges. Curr Opin Infect Dis. 2009;22(4):376–384. doi:10.1097/QCO.0b013e32832db9f3
  • Aimanianda V, Bayry J, Bozza S, et al. Surface hydrophobin prevents immune recognition of airborne fungal spores. Nature. 2009;460(7259):1117–1121. doi:10.1038/nature08264
  • Panda B. Fungal diseases of lungs: the emerging scenario. Indian J Tubercul. 2004;51(2):63–70.
  • Wilson LS, Reyes CM, Stolpman M, Speckman J, Allen K, Beney J. The direct cost and incidence of systemic fungal diseases. Value Health. 2002;5(1):26–34. doi:10.1046/j.1524-4733.2002.51108.x
  • Kubak BM. Fungal infection in lung transplantation. Transpl Infect Dis. 2002;4(3):24–31. doi:10.1034/j.1399-3062.4.s3.4.x
  • Pagano L, Caira M, Fianchi L. Pulmonary fungal infection with yeasts and pneumocystis in patients with hematological malignancy. Ann Med. 2005;37(4):259–269. doi:10.1080/07853890510037374
  • Sole A, Morant P, Salavert M, et al. Aspergillus infections in lung transplant recipients: risk factors and outcome. Clin Microbiol Infect. 2005;11(5):359–365. doi:10.1111/j.1469-0691.2005.01128.x
  • Tripathy U, Yung GL, Kriett JM, Thistlethwaite PA, Kapelanski DP, Jamieson SW. Donor transfer of pulmonary coccidioidomycosis in lung transplantation. Ann Thorac Surg. 2002;73(1):306–308. doi:10.1016/S0003-4975(01)02723-0
  • Hageage GJ, Harrington BJ. Use of calcofluor white in clinical mycology. Lab Med. 1984;15(2):109–112. doi:10.1093/labmed/15.2.109
  • Cheesbrough M. District Laboratory Practice in Tropical Countries. 2th ed. Cambridge university press; 2006.
  • Lai -C-C, Hsu HL, Lee LN, Hsueh P-R. Assessment of Platelia Aspergillus enzyme immunoassay for the diagnosis of invasive aspergillosis. J Microbiol Immunol Infect. 2007;40(2):148–153.
  • Abe M, Ogawa Z, Tanuma H, Kume H. Study of mycological examination methods in clinical laboratories-specimen pretreatment and isolation. Jpn J Med Mycol. 2009;50(4):235–242. doi:10.3314/jjmm.50.235
  • Procop GW, Church D, Hall G, et al. Koneman’s Color Atlas and Textbook of Diagnostic Microbiology. 7th ed. Philadelphia: Wolters Kluwer; 2017.
  • Agarwal S, Manchanda V, Verma N, Bhalla P. Yeast identification in routine clinical microbiology laboratory and its clinical relevance. Indian J Med Microbiol. 2011;29(2):172–177. doi:10.4103/0255-0857.81794
  • Topely & Wilsons. Microbiology and Microbial Diseases. 10th ed. Hodder Arnold Publisher; 2005.
  • Badiee P. Evaluation of human body fluids for the diagnosis of fungal diseases. Biomed Res Int. 2013;2013.
  • Nasri T, Hedayati MT, Abastabar M, et al. PCR-RFLP on β-tubulin gene for rapid identification of the most clinically important species of Aspergillus. J Microbiol Method. 2015;117:144–147. doi:10.1016/j.mimet.2015.08.007
  • Ferrer C, Colom F, Frasés S, Mulet E, Abad JL, Alio JL. Detection and identification of fungal pathogens by PCR and by ITS2 and 5.8 S ribosomal DNA typing in ocular infections. J Clin Microbiol. 2001;39(8):2873–2879. doi:10.1128/JCM.39.8.2873-2879.2001
  • Donnelly JP, Chen SC, Kauffman CA, et al. Revision and update of the consensus definitions of invasive fungal disease from the European Organization for research and treatment of cancer and the mycoses study group education and research Consortium. Clin Infect Dis. 2019. doi:10.1093/cid/ciz1008
  • Jahromi SB, Khaksar AA. Fungal isolates of the respiratory tract. Crit Care Med. 2002;30(12):A111. doi:10.1097/00003246-200212001-00378
  • Akhtar A, Roohani AH, Fatima N, Shameem M, Khan HM, Khan PA. Comparing the profile of respiratory fungal pathogens amongst immunocompetent and immunocompromised hosts, their susceptibility pattern and correlation of various opportunistic respiratory fungal diseases and their progression in relation to the CD4+ T-cell counts. Indian J Med Microbiol. 2018;36(3):408.
  • Ahmed M, Farghaly A, Raafat R, Abd Elsattar W. Study of the prevalence and pattern of fungal pneumonias in respiratory intensive care unit. Egypt J Bronchol. 2019;13(4):545–550. doi:10.4103/ejb.ejb_37_19
  • Gavazzi G, Krause K-H. Ageing and disease. Lancet Infect Dis. 2002;2(11):659–666. doi:10.1016/S1473-3099(02)00437-1
  • Rafiee S, Besharat S, Jabbari A, Golalipour F, Nasermoaadeli A. Epidemiology of tuberculosis in northeast of Iran: a population-based study. Iran J Med Sci. 2009;34(3):193–197.
  • Fontalvo DM, Jiménez Borré G, Gómez Camargo D, et al. Tuberculosis and fungal co-disease present in a previously healthy patient. Colomb Med. 2016;47(2):105–108. doi:10.25100/cm.v47i2.2271
  • Joos L, Tamm M. Breakdown of pulmonary host defense in the immunocompromised host: cancer chemotherapy. Proc Am Thorac Soc. 2005;2(5):445–448. doi:10.1513/pats.200508-097JS
  • Ramirez LC, Dal Nogare A, Hsia C, et al. Relationship between diabetes control and pulmonary function in insulin-dependent diabetes mellitus. Am J Med. 1991;91(4):371–376. doi:10.1016/0002-9343(91)90154-P
  • Spahr J, Weiner DJ, Stokes DC, Kurland G. Pulmonary Disease in the pediatric patient with acquired immunodeficiency states. In: Kendig’s Disorders of the Respiratory Tract in Children. Elsevier; 2019:923–943.
  • Hedayati MT, Mayahi S, Denning DW. A study on Aspergillus species in houses of asthmatic patients from Sari city, Iran and a brief review of the health effects of exposure to indoor Aspergillus. Environ Monit Assess. 2010;168(1–4):481–487. doi:10.1007/s10661-009-1128-x
  • Hedayati MT, Mayahi S, Movahedi M, Shokohi T. A Study on fungal flora of tap water as a potential reservoir of fungi in hospitals from Sari city, Iran. J Mycol Méd. 2011;21(1):10–14. doi:10.1016/j.mycmed.2010.12.001
  • Zarrinfar H, Saber S, Kordbacheh P, et al. Mycological microscopic and culture examination of 400 Bronchoalveolar Lavage (BAL) samples. Iran J Public Health. 2012;41(7):70–76.
  • Zanganeh E, Zarrinfar H, Rezaeetalab F, et al. Predominance of non-fumigatus Aspergillus species among patients suspected of pulmonary aspergillosis in a tropical and subtropical region of the Middle East. Microb Pathog. 2018;116:296–300. doi:10.1016/j.micpath.2018.01.047
  • Hedayati MT, Khodavaisy S, Alialy M, Omran SM, Habibi MR. Invasive aspergillosis in intensive care unit patients in Iran. Acta Medica (Hradec Kralove). 2013;56(2):52–56. doi:10.14712/18059694.2014.24
  • Clancy CJ, Jaber RA, Leather LH, et al. Bronchoalveolar lavage galactomannan in diagnosis of invasive pulmonary aspergillosis among solid-organ transplant recipients. J Clin Microbiol. 2007;45:1759–1765.
  • Husain S, Clancy CJ, Nguyen MH, et al. Performance characteristics of the Platelia Aspergillus enzyme immunoassay for detection of Aspergillus galactomannan antigen in bronchoalveolar lavage fluid. Clin Vaccine Immunol. 2008;15(12):1760–1763. doi:10.1128/CVI.00226-08
  • Sanguinetti M, Posteraro B, Pagano L, et al. Comparison of real-time PCR, conventional PCR, and galactomannan antigen detection by enzyme- linked immunosorbent assay using bronchoalveolar lavage fluid samples from hematology patients for diagnosis of invasive pulmonary aspergillosis. J Clin Microbiol. 2003;41:3922–3925. doi:10.1128/JCM.41.8.3922-3925.2003
  • Kali A, Charles MP, Noyal MJ, Sivaraman U, Kumar S, Easow JM. Prevalence of Candida co-infection in patients with pulmonary tuberculosis. Australas Medical J. 2013;6(8):387–391. doi:10.4066/AMJ.2013.1709
  • Denning DW, Pleuvry A, Cole DC. Global burden of chronic pulmonary aspergillosis as a sequel to pulmonary tuberculosis. Bull World Health Organ. 2011;89(12):864–872. doi:10.2471/BLT.11.089441