Identification of hub miRNA biomarkers for bladder cancer by weighted gene coexpression network analysis

References

• JemalABrayFCenterMMFerlayJWardEFormanDGlobal cancer statisticsCA Cancer J Clin2011612699021296855
   PubMed Web of Science ®Google Scholar
• KnowlesMAHurstCDMolecular biology of bladder cancer: new insights into pathogenesis and clinical diversityNature Reviews Cancer2015151254125533674
   PubMed Web of Science ®Google Scholar
• YafiFAAprikianAGChinJLContemporary outcomes of 2287 patients with bladder cancer who were treated with radical cystectomy: a Canadian multicentre experienceBJU Int2011108453954521166753
   PubMedGoogle Scholar
• NargundVHTanabalanCKKabirMNManagement of non-muscle-invasive (superficial) bladder cancerSemin Oncol201239555957223040252
   PubMed Web of Science ®Google Scholar
• ShelleyMDMasonMDKynastonHIntravesical therapy for superficial bladder cancer: A systematic review of randomised trials and meta-analysesCancer Treat Rev201036319520520079574
   PubMed Web of Science ®Google Scholar
• WilsonRCDoudnaJAMolecular mechanisms of RNA interferenceAnnu Rev Biophys20134221723923654304
   PubMed Web of Science ®Google Scholar
• KentOAMendellJTA small piece in the cancer puzzle: microRNAs as tumor suppressors and oncogenesOncogene20062546618817028598
   PubMed Web of Science ®Google Scholar
• RaskLBalslevESøkildeRDifferential expression of miR-139, miR-486 and miR-21 in breast cancer patients sub-classified according to lymph node statusCell Oncol (Dordr)201437321522725027758
   PubMedGoogle Scholar
• ZhaoTRenHLiJLASP1 is a HIF1α target gene critical for metastasis of pancreatic cancerCancer Res201575111111925385028
   PubMed Web of Science ®Google Scholar
• GuXFuCLinLmiR-124 and miR-9 mediated downregulation of HDAC5 promotes neurite development through activating MEF2C-GPM6A pathwayJ Cell Physiol2017233167368728332716
   PubMedGoogle Scholar
• DuYYZhaoLMChenLThe tumor-suppressive function of miR-1 by targeting LASP1 and TAGLN2 in esophageal squamous cell carcinomaJ Gastroenterol Hepatol201631238439326414725
   PubMed Web of Science ®Google Scholar
• DraytonRMDudziecEPeterSReduced expression of miRNA-27a modulates cisplatin resistance in bladder cancer by targeting the cystine/glutamate exchanger SLC7A11Clin Cancer Res20142071990200024516043
   PubMed Web of Science ®Google Scholar
• EissaSHabibHAliEKotbYEvaluation of urinary miRNA-96 as a potential biomarker for bladder cancer diagnosisMed Oncol201532117
   Google Scholar
• HirataHUenoKShahryariVOncogenic miRNA-182–5p Targets Smad4 and RECK in Human Bladder CancerPLoS One2012711e5105623226455
   PubMedGoogle Scholar
• YuHPeiDChenLZhouXZhuHIdentification of key genes and molecular mechanisms associated with dedifferentiated liposarcoma based on bioinformatic methodsOncoTargets Ther20171030173027
   PubMedGoogle Scholar
• KangLTaoXHeBSMicroRNA expression profiles predict progression and clinical outcome in lung adenocarcinomaOnco Targets Ther201695679569227695346
   PubMedGoogle Scholar
• GiuliettiMOcchipintiGPrincipatoGPivaFIdentification of candidate miRNA biomarkers for pancreatic ductal adenocarcinoma by weighted gene co-expression network analysisCell Oncol (Dordr)201740218119228205147
   PubMed Web of Science ®Google Scholar
• VoineaguIWangXJohnstonPTranscriptomic analysis of autistic brain reveals convergent molecular pathologyNature2011474735138038421614001
   PubMed Web of Science ®Google Scholar
• National Institutes of HealthThe Cancer Genome Atlas Available from: https://cancergenome.nih.gov/Accessed March 23, 2017
   Google Scholar
• RobinsonMDMccarthyDJSmythGKedgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201026113914019910308
   PubMed Web of Science ®Google Scholar
• LangfelderPHorvathSWGCNA: an R package for weighted correlation network analysisBMC Bioinformatics2008955919114008
   PubMed Web of Science ®Google Scholar
• DupuisJGeometric interpretation of gene coexpression network analysisPLoS Comput Biol200848e100011718704157
   PubMedGoogle Scholar
• YipAMHorvathSGene network interconnectedness and the generalized topological overlap measureBMC Bioinformatics200782217250769
   PubMed Web of Science ®Google Scholar
• LangfelderPLuoROldhamMCHorvathSIs my network module preserved and reproducible?PLoS Comput Biol201171e100105721283776
   PubMed Web of Science ®Google Scholar
• LangfelderPHorvathSEigengene networks for studying the relationships between co-expression modulesBMC Syst Biol2007115418031580
   PubMedGoogle Scholar
• DeweyFEPerezMVWheelerMTGene coexpression network topology of cardiac development, hypertrophy, and failureCirc Cardiovascu Genet2011412635
   PubMedGoogle Scholar
• AgarwalVBellGWNamJWBartelDPPredicting effective microRNA target sites in mammalian mRNAseLife20154e05005
   PubMed Web of Science ®Google Scholar
• UhlenMOksvoldPFagerbergLTowards a knowledge-based Human Protein AtlasNat Biotechnol201028121248125021139605
   PubMed Web of Science ®Google Scholar
• ShannonPMarkielAOzierOCytoscape: a software environment for integrated models of biomolecular interaction networksGenome Res200313112498250414597658
   PubMed Web of Science ®Google Scholar
• YamasakiTYoshinoHEnokidaHMolecular targets regulated by tumor suppressive microRNA-1 and microRNA-133a in bladder cancerInt J Oncol20124061821183022378464
   PubMedGoogle Scholar
• KawakamiKEnokidaHChiyomaruTThe functional significance of miR-1 and miR-133a in renal cell carcinomaEur J Cancer201248682783621745735
   PubMed Web of Science ®Google Scholar
• PatronJPFendlerABildMMiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosisPLoS One201274e3534522532850
   PubMed Web of Science ®Google Scholar
• KaraMYumrutasOOzcanODifferential expressions of cancer-associated genes and their regulatory miRNAs in colorectal carcinomaGene20155671818625925209
   PubMed Web of Science ®Google Scholar
• LiuBQuJXuFMiR-195 suppresses non-small cell lung cancer by targeting CHEK1Oncotarget20156119445945625840419
   PubMedGoogle Scholar
• AlmeidaMINicolosoMSZengLStrand-specific miR-28–5p and miR-28–3p have distinct effects in colorectal cancer cellsGastroenterology2012142488689622240480
   PubMed Web of Science ®Google Scholar
• GomesSESimõesAESPereiraDMCastroRERodriguesCMPBorralhoPMmiR-143 or miR-145 overexpression increases cetuximab-mediated antibody-dependent cellular cytotoxicity in human colon cancer cellsOncotarget2016789368938726824186
   PubMedGoogle Scholar
• BurottoMChiouVLLeeJMKohnECThe MAPK pathway across different malignancies: a new perspectiveCancer2014120223446345624948110
   PubMed Web of Science ®Google Scholar
• KimEKChoiEJCompromised MAPK signaling in human diseases: an updateArch Toxicol201589686788225690731
   PubMed Web of Science ®Google Scholar
• XuLZhangYWangHZhangGDingYZhaoLTumor suppressor miR-1 restrains epithelial-mesenchymal transition and metastasis of colorectal carcinoma via the MAPK and PI3K/AKT pathwayJ Transl Med201412111224387290
   PubMedGoogle Scholar
• WangHAnHWangBmiR-133a represses tumour growth and metastasis in colorectal cancer by targeting LIM and SH3 protein 1 and inhibiting the MAPK pathwayEur J Cancer201349183924393523968734
   PubMed Web of Science ®Google Scholar
• LiuWLiCXuYTopologically inferring risk-active pathways toward precise cancer classification by directed random walkBioinformatics201329172169217723842813
   PubMedGoogle Scholar
• YamaguchiHCondeelisJRegulation of the actin cytoskeleton in cancer cell migration and invasionBiochim Biophys Acta20071773564265216926057
   PubMed Web of Science ®Google Scholar
• LiDHuJSongHmiR-143–3p targeting LIM domain kinase 1 suppresses the progression of triple-negative breast cancer cellsAm J Transl Res2017952276228528559978
   PubMedGoogle Scholar
• LiuRYangMMengYTumor-suppressive function of miR-139–5p in esophageal squamous cell carcinomaPLoS One2013810e7706824204738
   PubMedGoogle Scholar
• EldeiryWSTokinoTVelculescuVEWAF1, a potential mediator of p53 tumor suppressionCell19937548178258242752
   PubMedGoogle Scholar
• LevineAJMomandJFinlayCAThe p53 tumour suppressor geneNature19983516326453456
   Google Scholar
• SachdevaMZhuSWuFp53 represses c-Myc through induction of the tumor suppressor miR-145Proc Natl Acad Sci U S A200910693207321219202062
   PubMed Web of Science ®Google Scholar
• CharfiCEdouardERassartEIdentification of GPM6A and GPM6B as potential new human lymphoid leukemia-associated oncogenesCell Oncol (Dordr)201437317919124916915
   PubMed Web of Science ®Google Scholar