Expression Profiles of Circular RNAs in Human Papillary Thyroid Carcinoma Based on RNA Deep Sequencing

References

• Haugen BR, Alexander EK, Bible KC, et al. 2015 American thyroid association management guidelines for adult patients with thyroid nodules and differentiated thyroid cancer: the American thyroid association guidelines task force on thyroid nodules and differentiated thyroid cancer. Thyroid. 2016;26(1):1–133. doi:10.1089/thy.2015.0020
   PubMed Web of Science ®Google Scholar
• Khan ZF, Kutlu O, Picado O, Lew JI. Margin positivity and survival outcomes: a review of 14,471 patients with 1-cm to 4-cm papillary thyroid carcinoma. J Am Coll Surg. 2021;232(4):545–550. doi:10.1016/j.jamcollsurg.2020.12.018
   PubMedGoogle Scholar
• Ito Y, Miyauchi A. Active surveillance as first-line management of papillary microcarcinoma. Annu Rev Med. 2019;70:369–379. doi:10.1146/annurev-med-051517-125510
   PubMed Web of Science ®Google Scholar
• Sheng L, Shi J, Han B, et al. Predicting factors for central or lateral lymph node metastasis in conventional papillary thyroid microcarcinoma. Am J Surg. 2020;220(2):334–340. doi:10.1016/j.amjsurg.2019.11.032
   PubMed Web of Science ®Google Scholar
• Xing M, Liu R, Liu X, et al. BRAF V600E and TERT promoter mutations cooperatively identify the most aggressive papillary thyroid cancer with highest recurrence. J Clin Oncol. 2014;32(25):2718–2726. doi:10.1200/JCO.2014.55.5094
   PubMed Web of Science ®Google Scholar
• Liu R, Xing M. TERT promoter mutations in thyroid cancer. Endocr Relat Cancer. 2016;23(3):R143–R155. doi:10.1530/ERC-15-0533
   PubMed Web of Science ®Google Scholar
• Anastasiadou E, Jacob LS, Slack FJ. Non-coding RNA networks in cancer. Nat Rev Cancer. 2018;18(1):5–18. doi:10.1038/nrc.2017.99
   PubMed Web of Science ®Google Scholar
• Nigro JM, Cho KR, Fearon ER, et al. Scrambled exons. Cell. 1991;64(3):607–613. doi:10.1016/0092-8674(91)90244-s
   PubMed Web of Science ®Google Scholar
• Suzuki H, Tsukahara T. A view of pre-mRNA splicing from RNase R resistant RNAs. Int J Mol Sci. 2014;15(6):9331–9342. doi:10.3390/ijms15069331
   PubMed Web of Science ®Google Scholar
• Sun H, Wu Z, Liu M, et al. CircRNA may not be “circular”. bioRxiv. 2020.
   Google Scholar
• Ye M, Hou H, Shen M, Dong S, Zhang T. Circular RNA circFOXM1 plays a role in papillary thyroid carcinoma by sponging miR-1179 and regulating HMGB1 expression. Mol Ther Nucleic Acids. 2020;19:741–750. doi:10.1016/j.omtn.2019.12.014
   PubMedGoogle Scholar
• Li S, Yang J, Liu X, Guo R, Zhang R. circITGA7 functions as an oncogene by sponging miR-198 and upregulating FGFR1 expression in thyroid cancer. Biomed Res Int. 2020;2020:8084028. doi:10.1155/2020/8084028
   PubMed Web of Science ®Google Scholar
• Wen G, Zhou T, Gu W. The potential of using blood circular RNA as liquid biopsy biomarker for human diseases. Protein Cell. 2020. doi:10.1007/s13238-020-00799-3
   Web of Science ®Google Scholar
• Hitzemann R, Bottomly D, Darakjian P, et al. Genes, behavior and next-generation RNA sequencing. Genes Brain Behav. 2013;12(1):1–12. doi:10.1111/gbb.12007
   PubMed Web of Science ®Google Scholar
• Hansen TB, Jensen TI, Clausen BH, et al. Natural RNA circles function as efficient microRNA sponges. Nature. 2013;495(7441):384–388. doi:10.1038/nature11993
   PubMed Web of Science ®Google Scholar
• Zhong S, Wang J, Zhang Q, Xu H, Feng J. CircPrimer: a software for annotating circRNAs and determining the specificity of circRNA primers. BMC Bioinform. 2018;19(1):292. doi:10.1186/s12859-018-2304-1
   PubMed Web of Science ®Google Scholar
• Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357–359. doi:10.1038/nmeth.1923
   PubMed Web of Science ®Google Scholar
• Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol. 2019;37(8):907–915. doi:10.1038/s41587-019-0201-4
   PubMed Web of Science ®Google Scholar
• Memczak S, Jens M, Elefsinioti A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature. 2013;495(7441):333–338. doi:10.1038/nature11928
   PubMed Web of Science ®Google Scholar
• Glazar P, Papavasileiou P, Rajewsky N. circBase: a database for circular RNAs. RNA. 2014;20(11):1666–1670. doi:10.1261/rna.043687.113
   PubMed Web of Science ®Google Scholar
• Huang HY, Lin YC, Li J, et al. miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database. Nucleic Acids Res. 2020;48(D1):D148–D154. doi:10.1093/nar/gkz896
   PubMed Web of Science ®Google Scholar
• Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498–2504. doi:10.1101/gr.1239303
   PubMed Web of Science ®Google Scholar
• Broadbent KM, Broadbent JC, Ribacke U, Wirth D, Rinn JL, Sabeti PC. Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA. BMC Genomics. 2015;16:454. doi:10.1186/s12864-015-1603-4
   PubMed Web of Science ®Google Scholar
• Fu L, Jiang Z, Li T, Hu Y, Guo J. Circular RNAs in hepatocellular carcinoma: functions and implications. Cancer Med. 2018;7(7):3101–3109. doi:10.1002/cam4.1574
   PubMed Web of Science ®Google Scholar
• Yao T, Chen Q, Fu L, Guo J. Circular RNAs: biogenesis, properties, roles, and their relationships with liver diseases. Hepatol Res. 2017;47(6):497–504. doi:10.1111/hepr.12871
   PubMed Web of Science ®Google Scholar
• Ahmed I, Karedath T, Andrews SS, et al. Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma. Oncotarget. 2016;7(24):36366–36381. doi:10.18632/oncotarget.8917
   PubMedGoogle Scholar
• Li F, Zhang L, Li W, et al. Circular RNA ITCH has inhibitory effect on ESCC by suppressing the Wnt/β-catenin pathway. Oncotarget. 2015;6(8):6001–6013. doi:10.18632/oncotarget.3469
   PubMed Web of Science ®Google Scholar
• Wang X, Zhang Y, Huang L, et al. Decreased expression of hsa_circ_001988 in colorectal cancer and its clinical significances. Int J Clin Exp Pathol. 2015;8(12):16020–16025.
   PubMed Web of Science ®Google Scholar
• Qu S, Song W, Yang X, et al. Microarray expression profile of circular RNAs in human pancreatic ductal adenocarcinoma. Genom Data. 2015;5:385–387. doi:10.1016/j.gdata.2015.07.017
   PubMed Web of Science ®Google Scholar
• Holdt LM, Kohlmaier A, Teupser D. Molecular functions and specific roles of circRNAs in the cardiovascular system. Noncoding RNA Res. 2018;3(2):75–98. doi:10.1016/j.ncrna.2018.05.002
   PubMedGoogle Scholar
• Zheng Q, Bao C, Guo W, et al. Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs. Nat Commun. 2016;7:11215. doi:10.1038/ncomms11215
   PubMed Web of Science ®Google Scholar
• Xin Z, Ma Q, Ren S, Wang G, Li F. The understanding of circular RNAs as special triggers in carcinogenesis. Brief Funct Genomics. 2017;16(2):80–86. doi:10.1093/bfgp/elw001
   PubMed Web of Science ®Google Scholar
• Liu LH, Tian QQ, Liu J, Zhou Y, Yong H. Upregulation of hsa_circ_0136666 contributes to breast cancer progression by sponging miR-1299 and targeting CDK6. J Cell Biochem. 2019;120(8):12684–12693. doi:10.1002/jcb.28536
   PubMed Web of Science ®Google Scholar
• Zhang FB, Du Y, Tian Y, Ji ZG, Yang PQ. MiR-1299 functions as a tumor suppressor to inhibit the proliferation and metastasis of prostate cancer by targeting NEK2. Eur Rev Med Pharmacol Sci. 2019;23(2):530–538. doi:10.26355/eurrev_201901_16865
   PubMed Web of Science ®Google Scholar
• Zhu H, Wang G, Zhou X, et al. miR-1299 suppresses cell proliferation of hepatocellular carcinoma (HCC) by targeting CDK6. Biomed Pharmacother. 2016;83:792–797. doi:10.1016/j.biopha.2016.07.037
   PubMed Web of Science ®Google Scholar
• Xu Y, Yao Y, Liu Y, et al. Elevation of circular RNA circ_0005230 facilitates cell growth and metastasis via sponging miR-1238 and miR-1299 in cholangiocarcinoma. Aging. 2019;11(7):1907–1917. doi:10.18632/aging.101872
   PubMedGoogle Scholar
• Dong HX, Wang R, Jin XY, Zeng J, Pan J. LncRNA DGCR5 promotes lung adenocarcinoma (LUAD) progression via inhibiting hsa-mir-22-3p. J Cell Physiol. 2018;233(5):4126–4136. doi:10.1002/jcp.26215
   PubMed Web of Science ®Google Scholar
• Ali I, Medegan B, Braun DP. Wnt9A induction linked to suppression of human colorectal cancer cell proliferation. Int J Mol Sci. 2016;17(4):495. doi:10.3390/ijms17040495
   PubMed Web of Science ®Google Scholar
• Wang J, Zhu CP, Hu PF, et al. FOXA2 suppresses the metastasis of hepatocellular carcinoma partially through matrix metalloproteinase-9 inhibition. Carcinogenesis. 2014;35(11):2576–2583. doi:10.1093/carcin/bgu180
   PubMed Web of Science ®Google Scholar
• Meng X, Kong DH, Li N, et al. Knockdown of BAG3 induces epithelial-mesenchymal transition in thyroid cancer cells through ZEB1 activation. Cell Death Dis. 2014;5:e1092. doi:10.1038/cddis.2014.32
   PubMed Web of Science ®Google Scholar