Oncogenic mutation profiling in new lung cancer and mesothelioma cell lines

References

• DeSantisCELinCCMariottoABCancer treatment and survivorship statistics, 2014CA Cancer J Clin201464425227124890451
   PubMed Web of Science ®Google Scholar
• LarsenJEMinnaJDMolecular biology of lung cancer: clinical implicationsClin Chest Med201132470374022054881
   PubMed Web of Science ®Google Scholar
• BrownsonRCChangJCDavisJRGender and histologic type variations in smoking-related risk of lung cancerEpidemiology19923161641313311
   PubMed Web of Science ®Google Scholar
• ZangEAWynderELDifferences in lung cancer risk between men and women: examination of the evidenceJ Natl Cancer Inst1996883–41831928632492
   PubMedGoogle Scholar
• PaoWGirardNNew driver mutations in non-small-cell lung cancerLancet Oncol201112217518021277552
   PubMed Web of Science ®Google Scholar
• NebhanCPaoWFurther advances in genetically informed lung cancer medicineJ Thorac Oncol20138552152223584291
   PubMed Web of Science ®Google Scholar
• LamDCGirardLSuenWSEstablishment and expression profiling of new lung cancer cell lines from Chinese smokers and lifetime never-smokersJ Thorac Oncol20061993294217409975
   PubMed Web of Science ®Google Scholar
• OieHKRussellEKCarneyDNGazdarAFCell culture methods for the establishment of the NCI series of lung cancer cell linesJ Cell Biochem Suppl19962424318806091
   PubMedGoogle Scholar
• TamIYChungLPSuenWSDistinct epidermal growth factor receptor and KRAS mutation patterns in non-small cell lung cancer patients with different tobacco exposure and clinicopathologic featuresClin Cancer Res20061251647165316533793
   PubMed Web of Science ®Google Scholar
• de Figueiredo-PontesLLWongDWTinVPIdentification and characterization of ALK kinase splicing isoforms in non-small-cell lung cancerJ Thorac Oncol20149224825324419423
   PubMed Web of Science ®Google Scholar
• DengWTsaoSWLucasJNLeungCSCheungALA new method for improving metaphase chromosome spreadingCytometry A2003511465112500304
   PubMed Web of Science ®Google Scholar
• ShafferLGSlovakMLCampbellLJAn international system for human cytogenetic nomenclature (2009)Basel; Unionville, CTKarger2009
   Google Scholar
• LiHDurbinRFast and accurate long-read alignment with Burrows-Wheeler transformBioinformatics201026558959520080505
   PubMed Web of Science ®Google Scholar
• GarrisonEMarthGHaplotype-based variant detection from short-read sequencingarXiv:1207.3907 [q-bio.GN]2012
   Google Scholar
• WangKLiMHakonarsonHANNOVAR: functional annotation of genetic variants from high-throughput sequencing dataNucleic Acids Res20103816e16420601685
   PubMed Web of Science ®Google Scholar
• GoecksJNekrutenkoATaylorJGalaxy TeamGalaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciencesGenome Biol2010118R8620738864
   PubMed Web of Science ®Google Scholar
• KumarPHenikoffSNgPCPredicting the effects of coding non-synonymous variants on protein function using the SIFT algorithmNat Protoc2009471073108119561590
   PubMed Web of Science ®Google Scholar
• SimNLKumarPHuJHenikoffSSchneiderGNgPCSIFT web server: predicting effects of amino acid substitutions on proteinsNucleic Acids Res201240Web Server issueW452W45722689647
   PubMed Web of Science ®Google Scholar
• ChoiYSimsGEMurphySMillerJRChanAPPredicting the functional effect of amino acid substitutions and indelsPloS One2012710e4668823056405
   PubMed Web of Science ®Google Scholar
• SodaMChoiYLEnomotoMIdentification of the transforming EML4-ALK fusion gene in non-small-cell lung cancerNature2007448715356156617625570
   PubMed Web of Science ®Google Scholar
• YeJFindeis-HoseyJJYangQCombination of napsin A and TTF-1 immunohistochemistry helps in differentiating primary lung adenocarcinoma from metastatic carcinoma in the lungAppl Immunohistochem Mol Morphol201119431331721464700
   PubMedGoogle Scholar
• KoivunenJPMermelCZejnullahuKEML4-ALK fusion gene and efficacy of an ALK kinase inhibitor in lung cancerClin Cancer Res200814134275428318594010
   PubMed Web of Science ®Google Scholar
• SunagaNShamesDSGirardLKnockdown of oncogenic KRAS in non-small cell lung cancers suppresses tumor growth and sensitizes tumor cells to targeted therapyMol Cancer Ther201110233634621306997
   PubMed Web of Science ®Google Scholar
• KelleyMJNakagawaKSteinbergSMMulshineJLKambAJohnsonBEDifferential inactivation of CDKN2 and Rb protein in non-small-cell and small-cell lung cancer cell linesJ Natl Cancer Inst199587107567617563154
   PubMedGoogle Scholar
• WaelHYoshidaRKudohSHasegawaKNiimori-KitaKItoTNotch1 signaling controls cell proliferation, apoptosis and differentiation in lung carcinomaLung Cancer201485213114024888228
   PubMed Web of Science ®Google Scholar
• GrazianiIEliaszSDe MarcoMAOpposite effects of Notch-1 and Notch-2 on mesothelioma cell survival under hypoxia are exerted through the Akt pathwayCancer Res200868239678968519047145
   PubMed Web of Science ®Google Scholar
• CondeESuarez-GauthierAGarcía-GarcíaESpecific pattern of LKB1 and phospho-acetyl-CoA carboxylase protein immunostaining in human normal tissues and lung carcinomasHum Pathol20073891351136017521700
   PubMed Web of Science ®Google Scholar
• LiuYMarksKCowleyGSMetabolic and functional genomic studies identify deoxythymidylate kinase as a target in LKB1-mutant lung cancerCancer Discov20133887087923715154
   PubMed Web of Science ®Google Scholar
• ShackelfordDBAbtEGerkenLLKB1 inactivation dictates therapeutic response of non-small cell lung cancer to the metabolism drug phenforminCancer Cell201323214315823352126
   PubMed Web of Science ®Google Scholar
• KanzakiHOuchidaMHanafusaHSingle nucleotide polymorphism of the AXIN2 gene is preferentially associated with human lung cancer risk in a Japanese populationInt J Mol Med200618227928416820935
   PubMed Web of Science ®Google Scholar
• GunesEGPinarbasiEPinarbasiHSiligYStrong association between lung cancer and the AXIN2 polymorphismMol Med Rep2009261029103521475939
   PubMed Web of Science ®Google Scholar
• SiegelinMDBorczukACEpidermal growth factor receptor mutations in lung adenocarcinomaLab Invest201494212913724378644
   PubMed Web of Science ®Google Scholar
• MazieresJPetersSLepageBLung cancer that harbors an HER2 mutation: epidemiologic characteristics and therapeutic perspectivesJ Clin Oncol201331161997200323610105
   PubMed Web of Science ®Google Scholar
• KhalilHSTummalaHHuppTRZhelevNPharmacological inhibition of ATM by KU55933 stimulates ATM transcriptionExp Biol Med (Maywood)2012237662263422728709
   PubMed Web of Science ®Google Scholar
• StorozhukYHopmansSNSanliTMetformin inhibits growth and enhances radiation response of non-small cell lung cancer (NSCLC) through ATM and AMPKBr J Cancer2013108102021203223632475
   PubMed Web of Science ®Google Scholar
• RezazadehSOn BLM helicase in recombination-mediated telomere maintenanceMol Biol Rep20134043049306423268311
   PubMed Web of Science ®Google Scholar
• SpolskiRLeonardWJInterleukin-21: basic biology and implications for cancer and autoimmunityAnnu Rev Immunol200826577917953510
   PubMed Web of Science ®Google Scholar
• SondergaardHCoquetJMUldrichAPEndogenous IL-21 restricts CD8+ T cell expansion and is not required for tumor immunityJ Immunol2009183117326733619915059
   PubMed Web of Science ®Google Scholar
• BonannoLFavarettoARosellRPlatinum drugs and DNA repair mechanisms in lung cancerAnticancer Res201434149350124403507
   PubMed Web of Science ®Google Scholar
• TalletANaultJCRenierAOverexpression and promoter mutation of the TERT gene in malignant pleural mesotheliomaOncogene201433283748375223975423
   PubMed Web of Science ®Google Scholar
• KobayashiMTakeuchiTOhtsukiYEstablishment of three novel human malignant pleural mesothelioma cell lines: morphological and cytogenetical studies and EGFR mutation statusAnticancer Res2008281A19720818383846
   PubMed Web of Science ®Google Scholar
• KorhonenMKVuorenmaaENyströmMThe first functional study of MLH3 mutations found in cancer patientsGenes Chromosomes Cancer200847980380918521850
   PubMed Web of Science ®Google Scholar
• ScarpaASikoraKFassanMMolecular typing of lung adenocarcinoma on cytological samples using a multigene next generation sequencing panelPloS One2013811e8047824236184
   PubMed Web of Science ®Google Scholar
• ImielinskiMBergerAHHammermanPSMapping the hallmarks of lung adenocarcinoma with massively parallel sequencingCell201215061107112022980975
   PubMed Web of Science ®Google Scholar
• GreulichHThe genomics of lung adenocarcinoma: opportunities for targeted therapiesGenes Cancer20101121200121021779443
   PubMedGoogle Scholar
• DingLGetzGWheelerDASomatic mutations affect key pathways in lung adenocarcinomaNature200845572161069107518948947
   PubMed Web of Science ®Google Scholar