Changes in the Composition and Function of the Human Salivary Microbiome After Heart Transplantation: A Pilot Study

References

• Obeng N, Bansept F, Sieber M, Traulsen A, Schulenburg H. Evolution of microbiota-host associations: the microbe’s perspective. Trends Microbiol. 2021;29(9):779–787. doi:10.1016/j.tim.2021.02.005
   Web of Science ®Google Scholar
• Zmora N, Zeevi D, Korem T, Segal E, Elinav E. Taking it personally: personalized utilization of the human microbiome in health and disease. Cell Host Microbe. 2016;19(1):12–20. doi:10.1016/j.chom.2015.12.016
   PubMed Web of Science ®Google Scholar
• Sender R, Fuchs S, Milo R. Revised estimates for the number of human and bacteria cells in the body. PLoS Biol. 2016;14(8):e1002533. doi:10.1371/journal.pbio.1002533
   PubMed Web of Science ®Google Scholar
• Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature. 2007;449(7164):804–810. doi:10.1038/nature06244
   PubMed Web of Science ®Google Scholar
• Belkaid Y, Hand TW. Role of the microbiota in immunity and inflammation. Cell. 2014;157(1):121–141.
   PubMed Web of Science ®Google Scholar
• Zimmermann M, Zimmermann-Kogadeeva M, Wegmann R, Goodman AL. Mapping human microbiome drug metabolism by gut bacteria and their genes. Nature. 2019;570(7762):462–467. doi:10.1038/s41586-019-1291-3
   PubMed Web of Science ®Google Scholar
• Daliri EB, Ofosu FK, Chelliah R, Lee BH, Oh DH. Challenges and Perspective in integrated multi-omics in gut microbiota studies. Biomolecules. 2021;11(2):300. doi:10.3390/biom11020300
   Web of Science ®Google Scholar
• Manor O, Borenstein E. Systematic characterization and analysis of the taxonomic drivers of functional shifts in the human microbiome. Cell Host Microbe. 2017;21(2):254–267. doi:10.1016/j.chom.2016.12.014
   PubMed Web of Science ®Google Scholar
• Martellacci L, Quaranta G, Fancello G, et al. Characterizing peri-implant and sub-gingival microbiota through culturomics. first isolation of some species in the oral cavity. a pilot study. Pathogens. 2020;9(5):5. doi:10.3390/pathogens9050365
   Web of Science ®Google Scholar
• Patini R. Oral microbiota: discovering and facing the new associations with systemic diseases. pathogens. 2020;9(4):4. doi:10.3390/pathogens9040313
   Web of Science ®Google Scholar
• Martellacci L, Quaranta G, Patini R, et al. Review of Metagenomics and culturomics of the peri-implant microbiome: current evidence and future perspectives. Materials. 2019;12:18. doi:10.3390/ma12183010
   Web of Science ®Google Scholar
• Baghai Arassi M, Zeller G, Karcher N, Zimmermann M, Toenshoff B. The gut microbiome in solid organ transplantation. Pediatr Transplant. 2020;24(7):e13866. doi:10.1111/petr.13866
   Web of Science ®Google Scholar
• Dewhirst FE, Chen T, Izard J, et al. The human oral microbiome. J Bacteriol. 2010;192(19):5002–5017. doi:10.1128/JB.00542-10
   PubMed Web of Science ®Google Scholar
• Lee JR, Magruder M, Zhang L, et al. Gut microbiota dysbiosis and diarrhea in kidney transplant recipients. Am J Transplant. 2019;19(2):488–500. doi:10.1111/ajt.14974
   Web of Science ®Google Scholar
• Chhibber-Goel J, Singhal V, Bhowmik D, et al. Linkages between oral commensal bacteria and atherosclerotic plaques in coronary artery disease patients. NPJ Biofilms Microbiomes. 2016;2(1):7. doi:10.1038/s41522-016-0009-7
   PubMedGoogle Scholar
• Pietiäinen M, Liljestrand JM, Kopra E, Pussinen PJ. Mediators between oral dysbiosis and cardiovascular diseases. Eur J Oral Sci. 2018;126(Suppl 1):26–36. doi:10.1111/eos.12423
   Google Scholar
• Gibson CM, Childs-Kean LM, Naziruddin Z, Howell CK. The alteration of the gut microbiome by immunosuppressive agents used in solid organ transplantation. Transpl Infect Dis. 2021;23(1):e13397. doi:10.1111/tid.13397
   Web of Science ®Google Scholar
• Alegre ML, Mannon RB, Mannon PJ. The microbiota, the immune system and the allograft. Am J Transplant. 2014;14(6):1236–1248. doi:10.1111/ajt.12760
   PubMed Web of Science ®Google Scholar
• Rahim HTM, Hirota SA, Greenway SC. Microbiome alterations following solid organ transplantation: consequences, solutions and prevention. Transplant Res Risk Management. 2018;10:1–11. doi:10.2147/TRRM.S143063
   Web of Science ®Google Scholar
• Flannigan KL, Rajbar T, Moffat A, et al. Changes in composition of the gut bacterial microbiome after fecal microbiota transplantation for recurrent clostridium difficile infection in a pediatric heart transplant patient. Front Cardiovasc Med. 2017;4(17):17. doi:10.3389/fcvm.2017.00017
   Google Scholar
• Zhang Z, Liu L, Tang H, et al. Immunosuppressive effect of the gut microbiome altered by high-dose tacrolimus in mice. Am J Transplant. 2018;1:5847.
   Google Scholar
• Bartram AK, Lynch MD, Stearns JC, Moreno-Hagelsieb G, Neufeld JD. Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads. Appl Environ Microbiol. 2011;77(11):3846–3852. doi:10.1128/AEM.02772-10
   PubMed Web of Science ®Google Scholar
• Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnetjournal. 2011;17:10–12.
   Google Scholar
• Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP. DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13(7):581–583. doi:10.1038/nmeth.3869
   PubMed Web of Science ®Google Scholar
• McMurdie PJ, Holmes S. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One. 2013;8(4):e61217. doi:10.1371/journal.pone.0061217
   PubMed Web of Science ®Google Scholar
• Gregory Caporaso J, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Publishing Group. 2010;5:7.
   Google Scholar
• Langille MGI, Zaneveld J, Caporaso JG, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013;31:814–821. doi:10.1038/nbt.2676
   PubMed Web of Science ®Google Scholar
• Parks DH, Tyson GW, Hugenholtz P, Beiko RG. STAMP: statistical analysis of taxonomic and functional profiles. (1367-4811 (Electronic)). Bioinformatics. 2014;30(21):3123
   PubMed Web of Science ®Google Scholar
• Kanehisa M, Furumichi M, Tanabe M, Sato Y, Morishima K. KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Res. 2017;45(D1):D353–d361. doi:10.1093/nar/gkw1092
   PubMed Web of Science ®Google Scholar
• Mohammed H, Varoni EM, Cochis A, et al. Oral Dysbiosis in Pancreatic Cancer and Liver Cirrhosis: a Review of the Literature. Biomedicines. 2018;6(4):115. doi:10.3390/biomedicines6040115
   Web of Science ®Google Scholar
• Pradier A, Masouridi-Levrat S, Bosshard C, et al. Torque Teno Virus as a Potential Biomarker for Complications and Survival After Allogeneic Hematopoietic Stem Cell Transplantation. Front Immunol. 2020;11:998. doi:10.3389/fimmu.2020.00998
   PubMed Web of Science ®Google Scholar
• Rezahosseini O, Drabe CH, Sørensen SS, et al. Torque-Teno virus viral load as a potential endogenous marker of immune function in solid organ transplantation. Transplant Rev. 2019;33(3):137–144. doi:10.1016/j.trre.2019.03.004
   Web of Science ®Google Scholar
• Diaz PI, Hong BY, Frias-Lopez J, et al. Transplantation-associated long-term immunosuppression promotes oral colonization by potentially opportunistic pathogens without impacting other members of the salivary bacteriome. Clin Vaccine Immunol. 2013;20(6):920–930. doi:10.1128/CVI.00734-12
   Google Scholar
• Verma D, Garg PK, Dubey AK. Insights into the human oral microbiome. Arch Microbiol. 2018;200(4):525–540. doi:10.1007/s00203-018-1505-3
   PubMed Web of Science ®Google Scholar
• Lee JR, Muthukumar T, Dadhania D, et al. Gut microbial community structure and complications after kidney transplantation: a pilot study. Transplantation. 2014;98(7):697–705.
   PubMed Web of Science ®Google Scholar
• Sun L-Y, Yang Y-S, Qu W, et al. Gut microbiota of liver transplantation recipients. Sci Rep. 2017;7(1):3762. doi:10.1038/s41598-017-03476-4
   Google Scholar
• Rodríguez JM, Murphy K, Stanton C, et al. The composition of the gut microbiota throughout life, with an emphasis on early life. Microb Ecol Health Dis. 2015;26:26050.
   PubMed Web of Science ®Google Scholar