Evolution of a domain conserved in microtubule-associated proteins of eukaryotes

References

• AmosLASchlieperD2005Microtubules and mapsAdv Protein Chem712579816230114
   PubMedGoogle Scholar
• ApicGGoughJTeichmannSA2001Domain combinations in archaeal, eubacterial and eukaryotic proteomesJ Mol Biol3103112511428892
   PubMed Web of Science ®Google Scholar
• Arabidopsis Genome Initiative2000Analysis of the genome sequence of the flowering plant Arabidopsis thalianaNature40879681511130711
   PubMed Web of Science ®Google Scholar
• ArisueNHasegawaMHashimotoT2005Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence dataMol Biol Evol224092015496553
   PubMed Web of Science ®Google Scholar
• BaileyTLElkanC1994Fitting a mixture model by expectation maximization to discover motifs in biopolymersProceedings of the Second International Conference on Intelligent Systems for Molecular BiologyAAAI PressMenlo Park, CA2836
   Google Scholar
• BaileyTLGribskovM1998Combining evidence using p-values: application to sequence homology searchesBioinformatics1448549520501
   PubMed Web of Science ®Google Scholar
• BaylissRSardonTVernosI2003Structural basis of Aurora-A activation by TPX2 at the mitotic spindleMol Cell128516214580337
   PubMed Web of Science ®Google Scholar
• BeitzE2000TeXshade: shading and labeling of multiple sequence alignments using LaTeX2eBioinformatics16135910842735
   PubMed Web of Science ®Google Scholar
• BejeranoGPheasantMMakuninI2004Ultraconserved elements in the human genomeScience3041321515131266
   PubMed Web of Science ®Google Scholar
• BielawskiJPYangZ2003Maximum likelihood methods for detecting adaptive evolution after gene duplicationJ Struct Func Genomics320112
   PubMedGoogle Scholar
• BirneyEStamatoyannopoulosJADuttaA2007Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectNature44779981617571346
   PubMed Web of Science ®Google Scholar
• BrunetSSardonTZimmermanT2004Characterization of the TPX2 domains involved in microtubule nucleation and spindle assembly in Xenopus egg extractsMol Biol Cell1553182815385625
   PubMed Web of Science ®Google Scholar
• ChaffeyNBarlowPSundbergB2002Understanding the role of the cytoskeleton in wood formation in angiosperm trees: hybrid aspen (Populus tremula × P. tremuloides) as the model speciesTree Physiol222394911874720
   PubMed Web of Science ®Google Scholar
• ChaffeyNBarnettJBarlowP1999A cytoskeletal basis for wood formation in angiosperm trees: the involvement of cortical microtubulesPlanta2081930
   Web of Science ®Google Scholar
• ChaffeyNJBarnettJRBarlowPW1997Cortical microtubule involvement in bordered pit formation in secondary xylem vessel elements of Aesculus hippocastanum L (Hippocastanaceae): A correlative study using electron microscopy and indirect immunofluorescence microscopyProtoplasma1976475
   Web of Science ®Google Scholar
• CiccarelliFDDoerksTvon MeringC2006Toward automatic reconstruction of a highly resolved tree of lifeScience3111283716513982
   PubMed Web of Science ®Google Scholar
• EddySR1998Profile hidden Markov modelsBioinformatics14755639918945
   PubMed Web of Science ®Google Scholar
• EdgarRC2004MUSCLE: multiple sequence alignment with high accuracy and high throughputNucleic Acids Res321792715034147
   PubMed Web of Science ®Google Scholar
• ElofssonASonnhammerELL1999A comparison of sequence and structure protein domain families as a basis for structural genomicsBioinformatics1548050010383473
   PubMed Web of Science ®Google Scholar
• FitchWM1970Distinguishing homologous from analogous proteinsSyst Zool19991135449325
   PubMedGoogle Scholar
• FunadaRMiuraHShibagakiM2001Involvement of localized cortical microtubules in the formation of a modified structure of woodJ Plant Res1144917
   Web of Science ®Google Scholar
• GardinerJCTaylorNGTurnerSR2003Control of cellulose synthase complex localization in developing xylemPlant Cell151740812897249
   PubMed Web of Science ®Google Scholar
• GoddardRHWickSMSilflowCD1994Microtubule components of the plant-cell cytoskeletonPlant Physiol1041612232055
   PubMed Web of Science ®Google Scholar
• GoffSA2005A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) (April, pg 92, 2002)Science30987916081721
   PubMed Web of Science ®Google Scholar
• GoffSARickeDLanTH2002A draft sequence of the rice genome (Oryza sativa L. ssp japonica)Science2969210011935018
   PubMed Web of Science ®Google Scholar
• HasekJTrachtulcovaPKohlweinSD2003Colocalization of cortical microtubules and F-actin in Dipodascus magnusii using confocal laser scanning microscopyFolia Microbiol481778212800500
   PubMed Web of Science ®Google Scholar
• HigoKUgawaYIwamotoM1999Plant cis-acting regulatory DNA elements (PLACE) database: 1999Nucleic Acids Res272973009847208
   PubMed Web of Science ®Google Scholar
• HuangXQMadanA1999CAP3: A DNA sequence assembly programGenome Res98687710508846
   PubMed Web of Science ®Google Scholar
• JareborgNBirneyEDurbinR1999Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairsGenome Res98152410508839
   PubMed Web of Science ®Google Scholar
• KatohKKumaKTohH2005MAFFT version 5: improvement in accuracy of multiple sequence alignmentNucleic Acids Res33511815661851
   PubMed Web of Science ®Google Scholar
• KatohKMisawaKKumaK2002MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transformNucleic Acids Res3030596612136088
   PubMed Web of Science ®Google Scholar
• KorolevAVBuschmannHDoonanJH2007AtMAP70-5, a divergent member of the MAP70 family of microtubule-associated proteins, is required for anisotropic cell growth in ArabidopsisJ Cell Sci1202241717567681
   PubMed Web of Science ®Google Scholar
• LassmannTSonnhammerELL2005Kalign – an accurate and fast multiple sequence alignment algorithmBMC Bioinfo6298
   PubMed Web of Science ®Google Scholar
• MathurJ2004Plant cytoskeleton: Reinforcing lines of division in plant cellsCurr Biol14R287915062125
   PubMed Web of Science ®Google Scholar
• OdaYMimuraTHasezawaS2005Regulation of secondary cell wall development by cortical microtubules during tracheary element differentiation in Arabidopsis cell suspensionsPlant Physiol13710273615709154
   PubMed Web of Science ®Google Scholar
• PalaniswamySKJamesSSunH2006AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networksPlant Physiol1408182916524982
   PubMed Web of Science ®Google Scholar
• ParadezAWrightAEhrhardtDW2006Microtubule cortical array organization and plant cell morphogenesisCurr Opin Plant Biol9571817010658
   PubMed Web of Science ®Google Scholar
• PatersonAHChapmanBAKissingerJC2006Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and TetraodonTrends Genetics22597602
   PubMed Web of Science ®Google Scholar
• PerrinRMWangYYuenCYL2007WVD2 is a novel microtubule-associated protein in Arabidopsis thalianaPlant J499617117319849
   PubMed Web of Science ®Google Scholar
• RedekerVLevilliersNVinoloE2005Mutations of tubulin glycylation sites reveal cross-talk between the C termini of alpha- and beta-tubulin and affect the ciliary matrix in TetrahymenaJ Biol Chem28059660615492004
   PubMed Web of Science ®Google Scholar
• RobertsAWFrostAORobertsEM2004Roles of microtubules and cellulose microfibril assembly in the localization of secondary-cell- wall deposition in developing tracheary elementsProtoplasma2242172915614483
   PubMed Web of Science ®Google Scholar
• RonquistFHuelsenbeckJP2003MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics191572412912839
   PubMed Web of Science ®Google Scholar
• SabbaRPVaughnKC1999Herbicides that inhibit cellulose biosynthesisWeed Sci4775763
   Web of Science ®Google Scholar
• SandelinABaileyPBruceS2004Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomesBMC Genomics59915613238
   PubMed Web of Science ®Google Scholar
• SedbrookJC2004MAPs in plant cells: delineating microtubule growth dynamics and organizationCurr Opin Plant Biol76324015491911
   PubMed Web of Science ®Google Scholar
• SlaterGSBirneyE2005Automated generation of heuristics for biological sequence comparisonBMC Bioinfo631
   PubMed Web of Science ®Google Scholar
• SolovyevVVShahmuradovIA2003PromH: promoters identification using orthologous genomic sequencesNucleic Acids Res313540512824362
   PubMed Web of Science ®Google Scholar
• TuskanGADiFazioSJanssonS2006The genome of black cottonwood, Populus trichocarpa (Torr and Gray)Science313159660416973872
   PubMed Web of Science ®Google Scholar
• VassilyevAE1996The cytoskeleton of animals and higher plants: The comparison of structure and functionsZhurnal Obshchei Biol57293325
   Web of Science ®Google Scholar
• VogelCBashtonMKerrisonND2004Structure, function and evolution of multidomain proteinsCurr Opin Struct Biol142081615093836
   PubMed Web of Science ®Google Scholar
• WapinskiIPfefferAFriedmanN2007Natural history and evolutionary principles of gene duplication in fungiNature449546117805289
   PubMed Web of Science ®Google Scholar
• WasteneysGOYangYB2004New views on the plant cytoskeletonPlant Physiol13638849115591446
   PubMed Web of Science ®Google Scholar
• WeinerJBornberg-BauerE2006Evolution of circular permutations in multidomain proteinsMol Biol Evol237344316431849
   PubMed Web of Science ®Google Scholar
• WittmannTWilmMKarsentiE2000TPX2, a novel Xenopus MAP involved in spindle pole organizationJ Cell Biol14914051810871281
   PubMed Web of Science ®Google Scholar
• YangZ1997PAML: a program package for phylogenetic analysis by maximum likelihoodComput Appl Biosci1355569367129
   PubMedGoogle Scholar
• YuenCYLPearlmanRSSilo-SuhL2003WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in ArabidopsisPlant Physiol13149350612586874
   PubMed Web of Science ®Google Scholar