Description of Chloromonas kasaiae sp. nov. (Volvocales, Chlorophyceae), based on comparative electron microscopy and molecular data

REFERENCES

• Boldina O.N. 1998. On the ultrastructure of a unicellular green alga of the genus Chloromonas (Chlamydomonadaceae, Chlorophyta). Botanicheskii Zhurnal (Moscow and Leningrad) 83: 61–65, 1 pl (in Russian with English abstract).
   Google Scholar
• Boldina O.N. 2008. The ultrastructure of Chlamydomonas carrizoensis (Chlamydomonadaceae, Chlorophyta). Botanicheskii Zhurnal (Moscow and Leningrad) 93: 894–901, 4 pls (in Russian with English abstract).
   Google Scholar
• Coleman A.W. 2003. ITS2 is a double-edged tool for eukaryote evolutionary comparisons. TRENDS in Genetics 19: 370–375.
   PubMed Web of Science ®Google Scholar
• Coleman A.W. 2007. Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Research 35: 3322–3329.
   PubMed Web of Science ®Google Scholar
• Coleman A.W. 2009. Is there a molecular key to the level of ‘biological species’ in eukaryotes? A DNA guide. Molecular Phylogenetics and Evolution 50: 197–203.
   PubMed Web of Science ®Google Scholar
• Darty K., Denise A. & Ponty Y. 2009. VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25: 1974–1975.
   PubMed Web of Science ®Google Scholar
• Ettl H. 1970. Die Gattung Chloromonas Gobi emend. Wille (Chlamydomonas und Die Nächstverwandten Gattungen I). Nova Hedwigia Beihefte 34: 1–283.
   Google Scholar
• Ettl H. 1983. Chlorophyta I. Phytomonadina. In: Süßwasserflora von Mitteleuropa (Ed. by H. Ettl, J. Gerloff, H. Heynig & D. Mollenhauer), vol. 9. G. Fischer, Stuttgart. 807 pp.
   Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
   PubMed Web of Science ®Google Scholar
• Hayama M., Nakada T., Hamaji T. & Nozaki H. 2010. Morphology, molecular phylogeny and taxonomy of Gonium miaprilis sp. nov. (Goniaceae, Chlorophyta) from Japan. Phylocogia 49: 221–234.
   Web of Science ®Google Scholar
• Hu H.J. & Yin C.T. 2001. A new species of genus Chloromonas (Chlamydomonadaceae, Volvocales) and its life history. Journal of Wuhan Botanical Research. 19: 453–457 (in Chinese with English abstract).
   Google Scholar
• Iyengar M.O.P. & Desikachary T.V. 1981. Volvocales. Indian Council of Agricultural Research, New Delhi. 532 pp.
   Google Scholar
• Kasai F., Kawachi M., Erata M., Mori F., Yumoto K., Sato M. & Ishimoto M. [Eds] 2009. NIES-Collection. List of Strains, ed. 8. Japanese Journal of Phycology (Sorui) 57 (1), supplement: 1–350, pls 1–7.
   Google Scholar
• Kato S. 1982. Laboratory culture and morphology of Colacium vesiculosum Ehrb. (Euglenophyceae). Japanese Journal of Phycology (Sôrui) 30: 63–67 (in Japanese with English abstract).
   Google Scholar
• Keller A., Schleicher T., Schultz J., Müller T., Dandekar T. & Wolf M. 2009. 5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene 430: 50–57.
   PubMed Web of Science ®Google Scholar
• Luo L.M., Hu L.J. & Li Y.G. 2003. Studies on order Volvocales in China (II). Journal of Wuhan Botanical Research 21: 45–53 (in Chinese with English abstract).
   Google Scholar
• Mai J.C. & Coleman A.W. 1997. The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. Journal of Molecular Evolution 44: 258–271.
   PubMed Web of Science ®Google Scholar
• Matsuzaki R., Nakada T., Hara Y. & Nozaki H. 2010. Light and electron microscopy and molecular phylogenetic analyses of Chloromonas pseudoplatyrhyncha (Volvocales, Chlorophyceae). Phycological Research 58: 202–209.
   Web of Science ®Google Scholar
• Matsuzaki R., Hara Y. & Nozaki H. 2012. A taxonomic revision of Chloromonas reticulata (Volvocales, Chlorophyceae), the type species of the genus Chloromonas, based on multigene phylogeny and comparative light and electron microscopy. Phycologia 51: 74–85.
   Web of Science ®Google Scholar
• Morita E., Abe T., Tsuzuki M., Fujiwara S., Sato N., Hirata A., Sonoike K. & Nozaki H. 1998. Presence of the CO2-concentrating mechanism in some species of the pyrenoid-less free-living algal genus Chloromonas (Volvocales, Chlorophyta). Planta 204: 269–276.
   PubMed Web of Science ®Google Scholar
• Morita E., Abe T., Tsuzuki M., Fujiwara S., Sato N., Hirata A., Sonoike K. & Nozaki H. 1999. Role of pyrenoids in the CO2-concentrating mechanism: comparative morphology, physiology and molecular phylogenetic analysis of closely related strains of Chlamydomonas and Chloromonas (Volvocales). Planta 208: 365–372.
   Web of Science ®Google Scholar
• Müller T., Philippi N., Dandekar T., Schultz J. & Wolf M. 2007. Distinguishing species. RNA 13: 1469–1472.
   PubMed Web of Science ®Google Scholar
• Muramoto K., Nakada T., Shitara T., Hara Y. & Nozaki H. 2010. Re-examination of the snow algal species Chloromonas miwae (Fukushima) Muramoto et al., comb. nov. (Volvocales, Chlorophyceae) from Japan, based on molecular phylogeny and cultured material. European Journal of Phycology 45: 27–37.
   Web of Science ®Google Scholar
• Nakada T., Misawa K. & Nozaki H. 2008. Molecular systematics of Volvocales (Chlorophyceae, Chlorophyta) based on exhaustive 18S rRNA phylogenetic analyses. Molecular Phylogenetics and Evolution 48: 281–291.
   PubMed Web of Science ®Google Scholar
• Nakada T. & Nozaki H. 2009. Taxonomic study of two new genera of fusiform green flagellates, Tabris gen. nov. and Hamakko gen. nov. (Volvocales, Chlorophyceae). Journal of Phycology 45: 482–492.
   PubMed Web of Science ®Google Scholar
• Nozaki H., Misumi O. & Kuroiwa T. 2003. Phylogeny of the quadriflagellate Volvocales (Chlorophyceae) based on chloroplast multigene sequences. Molecular Phylogenetics and Evolution 29: 58–66.
   PubMed Web of Science ®Google Scholar
• Nozaki H., Nakada T. & Watanabe S. 2010. Evolutionary origin of Gloeomonas (Volvocales, Chlorophyceae), based on ultrastructure of chloroplasts and molecular phylogeny. Journal of Phycology 46: 195–201.
   Web of Science ®Google Scholar
• Pröschold T., Marin B., Schlösser U.G. & Melkonian M. 2001. Molecular phylogeny and taxonomic revision of Chloromonas (Chlorophyta). I. Emendation of Chlamydomonas Ehrenberg and Chloromonas Gobi, and description of Oogamochlamys gen. nov. and Lobochlamys gen. nov. Protist 152: 265–300.
   PubMed Web of Science ®Google Scholar
• Pröschold T. & Leliaert F. 2007. Systematics of the green algae: conflict of classic and modern approaches. In: Unravelling the algae: the past, present, and future of the algae systematics (Ed. by J. Brodie & J. Lewis), pp. 123–153. Taylor and Francis, London.
   Google Scholar
• Schlösser U.G. 1994. SAG-Sammlung von Algenkulturen at the University of Göttingen. Catalogue of strains 1994. Botanica Acta 107: 113–186.
   Google Scholar
• Schultz J., Maisel S., Gerlach D., Muller T. & Wolf M. 2005. A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA 11: 361–364.
   PubMed Web of Science ®Google Scholar
• Skuja H. 1956. Taxonomische und biologische studien über das phytoplankton schwedischer binnengewässer. Nova Acta Regiae Societatis Scientiarum Upsaliensis, series iV, 19 (3): 1–404.
   Google Scholar
• Starr R.C. & Zeikus J.A. 1993. UTEX — the culture collection of algae at the University of Texas at Austin. Journal of Phycology 29 (2), supplement: 1–106.
   Web of Science ®Google Scholar
• Wawrik F. 1987. Phytoplankton-Erstbesiedlung eines Teiches in Niederösterreich. Phyton (Austria) 27: 195–204.
   Google Scholar
• Zuker M. 2003. Mfold web serber for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31 (13): 3406–3415.
   PubMed Web of Science ®Google Scholar