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Articles

Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms

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Pages 411-421 | Received 09 Feb 2013, Accepted 04 Jun 2013, Published online: 13 May 2019

REFERENCES

  • Aboal M. & Werner O. 2011. Morphology, fine structure, life cycle and phylogenetic analysis of Phyllosiphon arisari, a siphonous parasitic green alga. European Journal of Phycology 46: 181–192.
  • Andersen R.A., Berges J.A., Harrison P.J. & Watanabe M.M. 2005. Recipes for freshwater and seawater media. In: Algal culturing techniques (Ed. by R.A. Andersen), pp. 429–538. Elsevier Academic Press, San Diego.
  • Aslam Z., Shin W.G., Kim M.K., Im W.T. & Lee S.T. 2007. Marinichlorella kaistiae gen. et sp. nov. (Trebouxiophyceae, Chlorophyta) based on polyphasic taxonomy. Journal of Phycology 43: 576–584.
  • Bock C., Krienitz L. & Pröschold T. 2011. Taxonomic reassessment of the genus Chlorella (Trebouxiophyceae) using molecular signatures (barcodes), including description of seven new species. Fottea 11: 293–312.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540–552.
  • Coleman A.W. 2009. Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide. Molecular Phylogenetics and Evolution 50: 197–203.
  • Darienko T., Gustavs L., Mudimu O., Menendez C.R., Schumann R., Karsten U., Friedl T. & Pröschold T. 2010. Chloroidium, a common terrestrial coccoid green alga previously assigned to Chlorella (Trebouxiophyceae, Chlorophyta). European Journal of Phycology 45: 79–95.
  • Darty K., Denise A. & Ponty Y. 2009. VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25: 1974–1975.
  • Ettl H. & Gärtner G. 1995. Syllabus der Boden-, Luft-und Flechtenalgen. G. Fischer, Stuttgart. 721 pp.
  • Friedl T. & Rybalka N. 2011. Systematics of the green algae: a brief introduction to the current status. In: Progress in botany 73 (Ed. by U. Lüttge, W. Beyschlag, B. Büdel & D. Francis), pp. 259–280. Springer, Heidelberg.
  • Gasulla F., Guéra A. & Barreno E. 2010. A simple and rapid method for isolating lichen photobionts. Symbiosis 51: 175–179.
  • Hallmann C., Rüdrich J., Enseleit M., Friedl T. & Hoppert M. 2011. Microbial diversity on a marble monument: a case study. Enviromental Earth Sciences 63: 1701–1711.
  • Hallmann C., Stannek L., Fritzlar D., Hause-Reitner D., Friedl T. & Hoppert M. 2013. Molecular diversity of phototrophic biofilms on building stone. FEMS Microbiology Ecology: DOI: 10.1111/1574-6941.12065
  • Hanagata N., Karube I., Chihara M. & Silva P.C. 1998. Reconsideration of the taxonomy of ellipsoidal species of Chlorella (Trebouxiophyceae, Chlorophyta), with establishment of Watanabea gen. nov. Phycological Research 46: 221–229.
  • Huss V.A.R., Ciniglia C., Cennamo P., Cozzolino S., Pinto G. & Pollio A. 2002. Phylogenetic relationships and taxonomic position of Chlorella-like isolates from low pH environments (pH < 3.0). BMC Evolutionary Biology 2: 13.
  • Ikeda T. & Takeda H. 1995. Species-specific differences of pyrenoids in Chlorella (Chlorophyta). Journal of Phycology 31: 813–818.
  • Karsten U., Friedl T., Schumann R., Hoyer K. & Lembcke S. 2005. Mycosporine-like amino acids and phylogenies in green algae: Prasiola and its relatives from the Trebouxiophyceae (Chlorophyta). Journal of Phycology 41: 557–566.
  • Katana A., Kwiatowski J., Spalik K., Zakrys B., Szalacha E. & Szymanska H. 2001. Phylogenetic position of Koliella (Chlorophyta) as inferred from nuclear and chloroplast small subunit rDNA. Journal of Phycology 37: 443–451.
  • Katoh K., Kuma K., Toh H. & Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511–518.
  • Krienitz L. & Bock C. 2012. Present state of the systematics of planktonic coccoid green algae of inland waters. Hydrobiologia 698: 295–326.
  • Krienitz L., Hegewald E.H., Hepperle D., Huss V.A.R., Rohr T. & Wolf M. 2004. Phylogenetic relationship of Chlorella and Parachlorella gen. nov. (Chlorophyta, Trebouxiophyceae). Phycologia 43: 529–542.
  • Lee H.J. & Hur S.B. 2012. Comparison between phylogenetic relationships based on 18S rDNA sequences and growth by salinity of Chlorella-like species (Chlorophyta). Fisheries and Aquatic Sciences 15: 125–135.
  • Leliaert F., Smith D.R., Moreau H., Herron M.D., Verbruggen H., Delwiche C.D. & De Clerck O. 2012. Phylogeny and molecular evolution of the green algae. Critical Reviews in Plant Sciences 31: 1–46.
  • Luo W., Pröschold T., Bock C. & Krienitz L. 2010. Generic concept in Chlorella-related coccoid green algae (Chlorophyta, Trebouxiophyceae). Plant Biology 12: 545–553.
  • Lüttge U. & Büdel B. 2010. Resurrection kinetics of photosynthesis in desiccation-tolerant terrestrial green algae (Chlorophyta) on tree bark. Plant Biology 12: 437–444.
  • Ma S., Huss V.A.R., Tan D., Sun X., Chen J., Xie Y. & Zhang J. 2013. A novel species in the genus Heveochlorella (Trebouxiophyceae, Chlorophyta) witnesses the evolution from an epiphytic into an endophytic lifestyle in tree-dwelling green algae. European Journal of Phycology 48: 200–209.
  • Müller T., Philippi N., Dandekar T., Schultz J. & Wolf M. 2007. Distinguishing species. RNA 13: 1469–1472.
  • Nelsen M.P., Rivas Plata E., Andrew C.J., Lücking R. & Lumbsch H.T. 2011. Phylogenetic diversity of trentepohlialean algae associated with lichen-forming fungi. Journal of Phycology 47: 282–290.
  • Neustupa J., Nemcova Y., Eliáš M. & Škaloud P. 2009. Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. Phycological Research 57: 159–169.
  • Neustupa J., Němcová Y., Veselá J., Steinová J. & Škaloud P. 2013. Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two novel Chlorella-like green microalgae (Trebouxiophyceae, Chlorophyta) from subaerial habitats. International Journal of Systematic and Evolutionary Microbiology 63: 377–387.
  • Nyati S., Beck A. & Honegger R. 2007. Fine structure and phylogeny of green algal photobionts in the microfilamentous genus Psoroglaena (Verrucariaceae, lichen-forming Ascomycetes). Plant Biology 9: 390–399.
  • Rambaut A. & Drummond A.J. 2007. Tracer v1.4. World-wide electronic publication, http://beast.bio.ed.ac.uk/Tracer (31 May 2013).
  • Ronquist F. & Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
  • Sherwood A.R., Garbary D.J. & Sheath R.G. 2000. Assessing the phylogenetic position of the Prasiolales (Chlorophyta) using rbcL and 18S rRNA gene sequence data. Phycologia 39: 139–146.
  • Škaloud P., Šťastný J., Nemjovă K., Mazalová P., Poulíčková A. & Neustupa J. 2012. Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae). Plant Systematics and Evolution 298: 1281–1292.
  • Swofford D.L. 2002. PAUP*: phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Sunderland, Massachusetts.
  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M. & Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731–2739.
  • Thüs H., Muggia L., Pérez-Ortega S., Favero-Longo S.E., Joneson S., O'Brien H., Nelsen M.P., Duque-Thus R., Grube M., Friedl T., Brodie J., Andrew C.J., Lücking R., Lutzoni F. & Gueidan C. 2011. Revisiting photobiont diversity in the lichen family Verrucariaceae (Ascomycota). European Journal of Phycology 46: 399–415.
  • Turmel M., Otis C. & Lemieux C. 2009. The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitaria reveal a shared ancestry between the Pedinomonadales and Chlorellales. Molecular Biology and Evolution 26: 2317–2331.
  • White T.J., Bruns T., Lee S. & Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications (Ed. by M.A. Innis, D.H. Gelfand, J.J. Sninsky & T.J. White), pp. 315–322. Academic Press, New York.
  • Wuyts J., De Rijk P., Van De Peer Y., Pison G., Rousseeuw P. & De Wachter R. 2000. Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area v4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Research 28: 4698–4708.
  • Zhang J.M., Huss V.A.R., Sun X.P., Chang K.J. & Pang D.B. 2008. Morphology and phylogenetic position of a trebouxiophycean green alga (Chlorophyta) growing on the rubber tree, Hevea brasiliensis, with the description of a new genus and species. European Journal of Phycology 43: 185–193.
  • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31: 3406–3415.
  • Zwickl D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. World-wide electronic publication, The University of Texas, Austin. http://www.bio.utexas.edu/faculty/antisense/garli/Garli.html (29 January 2013).

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