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Articles

Phylogeny and characterisation of Nannochloropsis oceanica var. sinensis var. nov. (Eustigmatophyceae), a new oleaginous alga from China

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Pages 573-577 | Received 01 Apr 2013, Accepted 20 Aug 2013, Published online: 13 May 2019

REFERENCES

  • Andersen R.A., Brett R.W., Potter D. & Sexton J.P. 1998. Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis. Protist 149: 61–74.
  • Antia N.J. & Cheng J.Y. 1982. The keto-carotenoids of two marine coccoid members of the Eustigmatophyceae. British Phycological Journal 17: 39–50.
  • Antia N.J., Bisalputra T., Cheng J.Y. & Kalley J.P. 1975. Pigment and cytological evidence for reclassification of Nannochloris oculata and Monallantus salina in the Eustigmatophyceae. Journal of Phycology 11: 339–343.
  • Apt K.E. & Behrens P.W. 1999. Commercial developments in microalgal biotechnology. Journal of Phycology 35: 215–226.
  • Bittner L., Payri C.E., Couloux A., Cruaud C., De Reviers B. & Rousseau F. 2008. Molecular phylogeny of the Dictyotales and their position within the Phaeophyceae, based on nuclear, plastid and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution 49: 211–226.
  • Chi X., Yang Q., Pan L., Chen M., He Y., Yang Z. & Yu S. 2011. Isolation and characterization of fatty acid desaturase genes from peanut (Arachis hypogaea L.). Plant Cell Reports DOI:10.1007/s00299-011-1048-4.
  • Fawley K.P. & Fawley M.W. 2007. Observations on the diversity and ecology of freshwater Nannochloropsis (Eustigmatophyceae), with descriptions of new taxa. Protist 158: 325–336.
  • Forján E., Garbayo I., Henriques M., Rocha J., Vega J.M. & Vílchez C. 2011. UV-A mediated modulation of photosynthetic efficiency, xanthophyll cycle and fatty acid production of Nannochloropsis. Marine Biotechnology 13: 366–375.
  • Goff L.J. & Moon D.A. 1993. PCR amplification of nuclear and plastid genes from algal herbarium specimens and algal spores. Journal of Phycology 29: 381–384.
  • Gu N., Lin Q., Li G., Qin G., Lin J. & Huang L. 2012. Effect of salinity change on biomass and biochemical composition of Nannochloropsis oculata. Journal of Agriculture and Food Chemistry 43: 97–106.
  • Guillard R.R. & Lorenzen C.J. 1972. Yellow-green algae with chlorophylide c. Journal of Phycology 8: 10–24.
  • Hamby R.K. & Zimmer E.A. 1988. Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae). Plant Systematics of Evolution 160: 29–37.
  • Hibberd D.J. 1981. Notes on the taxonomy and nomenclature of the algal classes Eustigmatophyceae and Tribophyceae (synonym Xanthophyceae). Botanical Journal of Linnean Society 82: 93–119.
  • Hillis D.M. & Dixon M.T. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. Quarterly Review ofBiology 66: 411–453.
  • Hodgson P.A., Henderson R.J., Sargent J.R. & Leftley J.W. 1991. Patterns of variation in the lipid class and fatty-acid composition of Nannochloropsis oculata (Eustigmatophyceae) during batch culture. I. The growth cycle. Journal of Applied Phycology 3: 169–181.
  • Huang Y.S. 1977. The ultrastructure, pigmentation, photosynthesis and genetic affinities of ‘Monodus sp.’, an undescribed, unicellular yellow green alga from eutrophic brackish waters. PhD thesis. University of North Carolina, Chapel Hill. 133 pp.
  • Karlson B., Potter D., Kuylenstierna M. & Andersen R.A. 1996. Ultrastructure, pigment composition, and 18S rRNA gene sequence for Nannochloropsis granulata sp. nov. (Monodopsidaceae, Eustigmatophyceae), a marine ultraplankter isolated from the Skagerrak, northeast Atlantic Ocean. Phycologia 35: 253–260.
  • Kilian O., Benemann C.S.E., Niyogi K.K. & Vick B. 2011. High-efficiency homologous recombination in the oil-producing alga, Nannochloropsis sp. Proceedings of the National Academy of Sciences of the United States of America 108: 21265–21269.
  • Krienitz L., Hepperle D., Stich H.B. & Weiler W. 2000. Nannochloropsis limnetica (Eustigmatophyceae), a new species of picoplankton from freshwater. Phycologia 39: 219–227.
  • Krienitz L., Bock C., Dadheech P.K. & Pröschold T. 2011. Taxonomic reassessment of the genus Mychonastes (Chlorophyceae, Chlorophyta) including the description of eight new species. Phycologia 50: 89–106.
  • Liu C.P. & Lin L.P. 2001. Ultrastructural study and lipid formation of Isochrysis sp. CCMP1324. Botanical Bulletin of Academia Sinica 42: 207–214.
  • Lubián L.M. 1982. Nannochloropsis gaditana sp. nov., una nueva Eustigmatophyceae marina. Lazaroa 4: 287–293.
  • Lubián L.M., Montero O., Moreno-Garrido I., Huertas E., Sobrino C., Valle M.G. & Pares G. 2000. Nannochloropsis (Eustigmatophyceae) as source of commercially valuable pigments. Journal of Applied Phycology 12: 249–255.
  • Lubzens E., Khayat M., Ravid T., Funkenstein B. & Tietz A. 1995. Lipoproteins and lipid accumulation within the ovaries of penaeid shrimp. Israeli Journal of Aquaculture-Bamidgeh 47: 185–195.
  • Maruyama I., Nakamura T., Matsubayashi T., Ando Y. & Maeda T. 1986. Identification of the alga known as ‘marine Chlorella’ as a member of the Eustigmatophyceae. Japanese Journal of Phycology 34: 319–325.
  • Norgard S., Svec W.A., Liaaen-Jensen S., Jensen A. & Guillard R.R.L. 1974. Chloroplast pigments and algal systematics. Biochemical Systematics and Ecology 2: 3–6.
  • Pal D., Khozin-Goldberg I., Cohen Z. & Boussiba S. 2011. The effect of light, salinity, and nitrogen availability on lipid production by Nannochloropsis sp. Applied Microbiology and Biotechnology 90: 1429–1441.
  • Posada D. & Crandall K.A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.
  • Provasoli, L. 1968. Media and prospects for the cultivation of marine algae. In: Culture and collections of algae. Proceedings of US—Japan Conference Held at Hakone, Japan (Ed. by A. Watanabe & R. Hattori), pp. 63–75. Japanese Society of Plant Physiology, Tokyo.
  • Radakovits R., Jinkerson R.E., Fuerstenberg S.I., Tae H., Settlage R.E., Boore J.L. & Posewitz M.C. 2012. Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nature Communications 3: 686 DOI:10.1038/ncomms1688.
  • Rodolfi L., Zittelli G.C., Bassi N., Padovani G., Biondi N., Bonini G. & Tredici M.R. 2009. Microalgae for oil: strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor. Biotechnology and Bioengineering 102: 100–112.
  • Ronquist F. & Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
  • Santos L.M.A. & Leedale G.P. 1995. Some notes on the ultrastructure of small azoosporic members of the algal class Eustigmatophyceae. Nova Hedwigia 60: 219–225.
  • Seibel P.N., Muller T., Dandekar T., Schultz J. & Wolf M. 2006. 4SALE — a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7: 498 DOI:10.1186/1471-2105-7-498.
  • Suda S., Atsumi M. & Miyashita H. 2002. Taxonomic characterization of a marine Nannochloropsis species, N. oceanica sp. nov. (Eustigmatophyceae). Phycologia 41: 273–279.
  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M. & Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology Evolution 28: 2731–2739.
  • Vieler A., Wu G., Tsai C.H., Bullard B., Cornish A.J., Harvey C., Reca I.B., Thornburg C., Achawanantakun R., Buehl C.J., Campbell M.S., Cavalier D., Childs K.L., Clark T.J., Deshpande R., Erickson E., Armenia Ferguson A., Handee W., Kong Q., Li X., Liu B., Lundback S., Peng C., Roston R.L., Sanjaya, Simpson J.P., Terbush A., Warakanont J., Zuner S., Farre E.M., Hegg E.L., Jiang N., Kuo M.H., Lu Y., Niyogi K.K., Ohlrogge J., Osteryoung K.W., Shachar-Hill Y., Sears B. B., Sun Y., Takahashi H., Yandell M., Shiu S.H. & Benning C. 2012. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. PLoS Genetics 8(11): e1003064 DOI:10.1371/journal.pgen.1003064.
  • Volkman J.K., Brown M.R., Dunstan G.A. & Jeffrey S.W. 1993. The biochemical composition of marine microalgae from the class Eustigmatophyceae. Journal of Phycology 29: 69–78.
  • Weeks D.P. 2011. Homologous recombination in Nannochloropsis: a powerful tool in an industrially relevant alga. Proceedings of the National Academy of Sciences of the United States of America 108: 20859.
  • Whittle S.J. & Casselton P.J. 1975. The chloroplast pigments of the algal classes Eustigmatophyceae and Xanthophyceae. I. Eustigmatophyceae. British Phycological Journal 10: 179–191.
  • Work V.H., Dadamo S., Radakovits R., Jinkerson R.E. & Posewitz M.C. 2011. Improving photosynthesis and metabolic networks for the competitive production of phototroph-derived biofuels. Current Opinion in Biotechnology 23: 1–8.
  • Yao P., Yu Z., Deng C., Liu S. & Zhen Y. 2011. Spatial-temporal distribution of phytoplankton pigments in relation to nutrient status in Jiaozhou Bay, China. Estuarine Coastal and Shelf Science 89: 234–244.
  • Zapata M., Rodríguez F. & Garrido J.L. 2000. Separation of chlorophylls and carotenoids from marine phytoplankton: a new HPLC method using a reversed phase C8 column and pyridine-containing mobile phases. Marine Ecology Progress Series 195: 29–45.

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