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Articles

tufA phylogeny and species boundaries in the green algal order Prasiolales (Trebouxiophyceae, Chlorophyta)

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Pages 396-406 | Received 04 Oct 2013, Accepted 19 Jan 2014, Published online: 13 May 2019

REFERENCES

  • Adey W.A., Lindstrom S.C., Hommersand M.H. & Muller K.M. 2008. The biogeographic origin of Arctic endemic seaweeds: a thermogeographic view. Journal of Phycology 44: 1384–1394.
  • Baldauf S., Manhart J.R. & Palmer J.D. 1990 Different fates of the chloroplast tuf A gene following its transfer to the nucleus in green algae. Proceedings of the National Academy of Sciences of the USA 87: 5317–5321.
  • Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.-M. & Van Etten J.L. 2010. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. The Plant Cell 22: 2943–2955.
  • Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.D., Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Pröschold T., Salamov A., Schmutz J., Weeks D., Yamada T., Lomsadze A., Borodovsky M., Claverie J.M., Grigoriev I.V. & Van Etten J.L. 2012. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biology 13: R39.
  • Boenigk J., Ereshefsky M., Hoef-Emden K., Mallet J. & Bass D. 2012. Concepts in protistology: species definitions and boundaries. European Journal of Protistology 48: 96–102.
  • Brouard J.-S., Otis C., Lemieux C. & Turmel M. 2011. The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the Chaetophorales. Genome Biology and Evolution 3: 505–515.
  • Burrows E.M. 1991. Seaweeds of the British Isles. Vol. 2: Chlorophyta. Natural History Museum Publications, London. 238 pp.
  • Carlile A.L., O'Kelly C.J. & Sherwood A.R. 2011. The green algal genus Cloniophora represents a novel lineage in the Ulvales: a proposal for Cloniophoraceae fam. nov. Journal of Phycology 47: 1379–1387.
  • Cole K. & Akintobi S. 1963. The life cycle of Prasiola meridionalis Setchell and Gardner. Canadian Journal of Botany 41: 661–668.
  • De Clerck O., Guiry M.D., Leliaert F., Samyn Y. & Verbruggen H. 2013. Algal taxonomy: a road to nowhere? Journal of Phycology 49: 215–225.
  • Degnan J.H. & Rosenberg N.A. 2009. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology and Evolution 24: 332–340.
  • Famà P., Wysor B., Kooistra W.H.C.F. & Zuccarello G.C. 2002. Molecular phylogeny of the genus Caulerpa (Caulerpales, Chlorophyta) inferred from chloroplast tufA gene. Journal of Phycology 38: 1040–1050.
  • Friedl T. & Rybalka N. 2012. Systematics of the green algae: a brief introduction to the current status. Progress in Botany 73: 259–280.
  • Friedmann I. 1959. Structure, life-history and sex determination of Prasiola stipitata Suhr. Annals of Botany 23: 571–594.
  • Friedmann I. 1969. Geographic and environmental factors controlling life history and morphology in Prasiola stipitata Suhr. Österreicher Botanischer Zeitschrift 116: 203–225.
  • Friedmann I. & Manton, I. 1960. Gametes, fertilization and zygote development in P. stipitata. Nova Hedwigia 1: 333–344.
  • Fucikova K., Rada J.C., Lukesova A. & Lewis L.A. 2011. Cryptic diversity within the genus Pseudomuriella Hanagata (Chlorophyta, Chlorophyceae, Sphaeropleales) assessed using four barcode markers. Nova Hedwigia 93: 29–46.
  • Galtier N., Gouy M. & Gautier C. 1996. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Computer Applications in Biosciences 12: 543–548.
  • Gardner N.L. 1917. New Pacific coast marine algae. 1. University of California Publications in Botany 6: 377–416.
  • Greville R.K. 1826. Scottish Cryptogamic Flora, Vol. 4. MacLachlan & Stewart, Edinburgh; Baldwin, Cradock, & Joy, London.
  • Guindon S. & Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696–704.
  • Guiry M.D. & Guiry G.M. 2013. AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; searched on 03 September 2013.
  • Hall J.D., Fucikova K., Lo C., Lewis L.A. & Karol K.G. 2010. An assessment of proposed DNA barcodes in freshwater green algae. Cryptogamie, Algologie 31: 529–555.
  • Hanic L.A. 1979. Observations on Prasiola meridionalis (S. & G.) and Rosenvingiella constricta (S. & G.) Silva (Chlorophyta, Prasiolales) from Galiano Island, British Columbia. Phycologia 18: 71–76.
  • Heesch S., Sutherland J.E. & Nelson W.A. 2012. Marine Prasiolales (Trebouxiophyceae, Chlorophyta) from New Zealand and the Balleny Islands, with descriptions of Prasiola novaezelandiae sp. nov. and Rosenvingiella australis sp. nov. Phycologia 51: 217–227.
  • Hornemann J.W. 1813. Flora danica. Vol. 9, fasc. 25 pp. 1–8, plates MCCCCXLI—MD. Havniae, Copenhagen. 10 pp.
  • Huelsenbeck J.P. & Ronquist F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754–755.
  • Jao C.C. 1937. New marine algae from Washington. Papers of the Michigan Academy of Sciences, Arts and Letters 22: 99–116.
  • Jao C.C. 1947. Prasiola yunnanica sp. nov. Botanical Bulletin of the Academia Sinica 1: 110.
  • Jessen C.F.G. 1848. Prasiolae generis algarum monographia. Dissertatio inauguralis botanica. Libraria Academica, Kiliae (Kiel, Germany). 20 pp.
  • Jobb G. 2011. Treefinder version of March 2011. World-wide electronic publication. http://www.treefinder.de.
  • John D.M. 2002. Order Prasiolales. In: The freshwater algal flora of the British Isles (Ed. by D.M. John, B.A. Whitton & A.J. Brook), pp. 433–468. Cambridge University Press, Cambridge, UK.
  • Jongma D., Campo D., Dattolo E., D'Esposito D., Duchi A., Grewe P., Huisman J., Verlaque M., Yokes M.B. & Procaccini G. 2013. Identity and origin of a slender Caulerpa taxifolia strain introduced into the Mediterranean Sea. Botanica Marina 56: 27–39.
  • Kang E.J., Scrosati R.A. & Garbary D.J. 2013. Physiological ecology of photosynthesis in Prasiola stipitata (Trebouxiophyceae) from the Bay of Fundy, Canada. Phycological Research 61: 208–216.
  • Kirkendale L., Saunders G.W. & Winberg P. 2013. A molecular survey of Ulva (Chlorophyta) in temperate Australia reveals enhanced levels of cosmopolitanism. Journal of Phycology 49: 69–81.
  • Knebel G. 1936. Monographie der algenreihe der Prasiolales, insbesondere von Prasiola crispa. Hedwigia 75: 1–120.
  • Kohlmeyer J., Hawksworth D.L. & Volkmann-Kohlmeyer B. 2004. Observations on two marine and maritime “borderline” lichens: Mastodia tessellata and Collemopsidium pelvetiae. Mycological Progress 3: 51–56.
  • Kornmann P. & Sahling P.H. 1974. Prasiolales (Chlorophyta) von Helgoland. Helgolander Meeresuntersuchungen 26: 99–133.
  • Kovacik L. & Batista Pereira A. 2001. Green alga Prasiola crispa and its lichenized form Mastodia tesselata in Antarctic environment: general aspects. Nova Hedwigia Beiheft 123: 465–478.
  • Krienitz L., Bock C., Luo W. & Pröschold T. 2010. Polyphyletic origin of the Dictyosphaerium morphotype within Chlorellaceae. Journal of Phycology 46: 559–563.
  • Lee R.K.S. 1980. A catalogue of the marine algae of the Canadian Arctic. National Museum of Canada Publications in Botany 9: 1–82.
  • Leliaert F., Verbruggen H., Wysor B. & De Clerck O. 2009. DNA taxonomy in morphologically plastic taxa: algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales). Molecular Phylogenetics and Evolution 53: 122–133.
  • Leliaert F., Smith D.R., Moreau H., Herron M.D., Verbruggen H., Delwiche C.F. & DeClerck O. 2012. Phylogeny and molecular evolution of the green algae. Critical Reviews in Plant Sciences 31: 1–46.
  • Letsch M.R., Muller-Parker G., Friedl T. & Lewis L.A. 2009. Elliptochloris marina sp. nov. (Trebouxiophyceae, Chlorophyta), symbiotic green alga of the temperate Pacific sea anemones Anthopleura xanthogrammatica and A. elegantissima (Anthozoa, Cnidaria). Journal of Phycology 45: 1127–1135.
  • Lindstrom S. 2001. The Bering Strait connection: dispersal and speciation in boreal macroalgae. Journal of Biogeography 28: 243–251.
  • Lud D., Huiskes A.H.L. & Ott S. 2001. Morphological evidence for the symbiotic character of Turgidosculum complicatulum Kohlm. & Kohlm. (= Mastodia tesselata Hook. f. & Harvey). Symbiosis 31: 141–151.
  • Luo W., Pflügmacher S., Pröschold T., Walz N. & Krienitz L. 2006. Genotype versus phenotype variability in Chlorella and Micractinium (Chlorophyta, Trebouxiophyceae). Protist 157: 315–333.
  • Moniz M.B.J., Rindi F. & Guiry M.D. 2012a. Phylogeny and taxonomy of Prasiolales (Trebouxiophyceae, Chlorophyta) from Tasmania, including Rosenvingiella tasmanica sp. nov. Phycologia 51: 86–97.
  • Moniz M.B.J., Rindi F., Novis P.M., Broady P.A. & Guiry M.D. 2012b. Molecular phylogeny of Antarctic Prasiola (Prasiolales, Trebouxiophyceae) reveals extensive cryptic diversity. Journal of Phycology 48: 940–955.
  • Naw M.W.D. & Hara Y. 2002. Morphology and molecular phylogeny of Prasiola sp. (Prasiolales, chlorophyta) from Myanmar. Phycological Research 50: 175–182.
  • Nielsen R., Petersen G., Seberg O., Daugbjerg N., O'Kelly C.J. & Wysor B. 2013. Revision of the genus Ulvella (Ulvellaceae, Ulvophyceae) based on morphology and tufA gene sequences of species in culture, with Acrochaete and Pringsheimiella placed in synonymy. Phycologia 52: 37–56.
  • Pedersen P.M. 1976. Marine, benthic algae from southernmost Greenland. Meddelelser om Grnland 199: 1–79.
  • Pedersen P.M. 2011. Grnlands havalger. Forlaget Epsilon DK, Copenhagen. pp. [1] 7–208.
  • Perez-Ortega S., De Los Rios A., Crespo A. & Sancho L.G. 2010. Symbiotic lifestyle and phylogenetic relationships of bionts of Mastodia tessellata (Ascomycota, incertae sedis). American Journal of Botany 97: 738–752.
  • Posada D. & Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817–818.
  • Printz H. 1964. Die Chaetophoralen der binnengewässer. Einesystematische übersicht. Hydrobiologia 24: 1–376.
  • Puillandre N., Lambert A., Brouillet S. & Achaz G. 2012. ABGD, automated barcode gap discovery for primary species delimitation. Molecular Ecology 21: 1864–1877.
  • Reed M. 1902. Two new ascomycetous fungi parasitic on marine algae. University of California Publications in Botany 1: 141–164.
  • Rindi F. 2006. Prasiola borealis — detailed description. Seaweeds of Alaska: http://www.seaweedsofalaska.com/species.asp?SeaweedID=146.
  • Rindi F. 2007. Trebouxiophyceae — Prasiolales. In: Green seaweeds of Britain and Ireland (Ed. by J. Brodie, C.A. Maggs & D.M. John), pp. 13–31. British Phycological Society, London.
  • Rindi F. 2010. Reproduction and life history of the green alga Prasiola linearis Jao (Trebouxiophyceae, Chlorophyta). Botanica Marina 53: 1–7.
  • Rindi F. 2011. Terrestrial green algae: systematics, biogeography and expected responses to climate change. In: Climate change, ecology and systematics (Ed. by T. Hodkinson, S. Jones, S. Waldren & J. Parnell), pp. 201–227. Cambridge University Press, Cambridge, UK.
  • Rindi F., McIvor L. & Guiry M.D. 2004. The Prasiolales (Chlorophyta) of Atlantic Europe: an assessment based on morphological, molecular and ecological data, including the characterization of Rosenvingiella radicans (Kützing) comb. nov. Journal of Phycology 40: 977–997.
  • Rindi F., McIvor L., Sherwood A.R., Friedl T., Guiry M.D. & Sheath R.G. 2007. Molecular phylogeny of the green algal order Prasiolales (Trebouxiophyceae, Chlorophyta). Journal of Phycology 43: 811–822.
  • Rinkel B., Hayes P., Gueidan C. & Brodie J. 2012. A molecular phylogeny of Acrochaete and other endophytic green algae (Ulvales, Chlorophyta). Journal of Phycology 48: 1020–1027.
  • Saunders G.W. 1993. Gel purification of red algal genomic DNA — an inexpensive and rapid method for the isolation of polymerase chain reaction-friendly DNA. Journal of Phycology 29: 251–254.
  • Saunders G.W. & Kucera H. 2010. An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae. Cryptogamie, Algologie 31: 487–528.
  • Saunders G.W. & McDevit D.C. 2013. DNA barcoding unmasks overlooked diversity improving knowledge on the composition and origins of the Churchill algal flora. BMC Ecology 2013, 13: 9.
  • Sauvage T., Payri C., Draisma S.G.A., Prud'homme van Reine W.F., Verbruggen H., Belton G., Gurgel C.F.D., Gabriel D., Sherwood A.R. & Fredericq S. 2013. Molecular diversity of the Caulerpa racemosa-Caulerpa peltata complex (Caulerpaceae, Bryopsidales) in New Caledonia, with new Australasian records for C. racemosa var. cylindracea. Phycologia 52: 6–13.
  • Setchell W.A. & Gardner N.L. 1920. Phycological contributions I. University of California Publications in Botany 7: 279–324.
  • Sherwood A.R., Garbary D.J. & Sheath R.G. 2000. Assessing the phylogenetic position of the Prasiolales (Chlorophyta) using rbcL and 18S rRNA gene sequence data. Phycologia 39: 139–146.
  • Silva P.C. 1957. Notes on Pacific marine algae. Madroño 14: 41–51.
  • Skaloud P. & Peksa O. 2010. Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta). Molecular Phylogenetics and Evolution 54: 36–46.
  • Stam W., Olsen J., Zaleski S.F., Murray S.N., Brown K.R. & Walters L. 2006. A forensic and phylogenetic survey of Caulerpa species (Caulerpales, Chlorophyta) from the Florida coast, local aquarium shops, and e-commerce: establishing a proactive baseline for early detection. Journal of Phycology 42: 1113–1124.
  • Stancheva R., Hall J.D., McCourt R.M. & Sheath R.G. 2013. Identity and phylogenetic placement of Spirogyra species (Zygnematophyceae, Charophyta) from California streams and elsewhere. Journal of Phycology 49: 588–607.
  • Tarcz S., Przybos E. & Surmacz M. 2013. An assessment of haplotype variation in ribosomal and mitochondrial DNA fragments suggests incomplete lineage sorting in some species of the Paramecium aurelia complex (Ciliophora, Protozoa). Molecular Phylogenetics and Evolution 67: 255–265.
  • Thompson J., Higgins D. & Gibson T. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673–4680.
  • Thüs W., Muggia L., Perez-Ortega S., Favero-Longo S.E., Joneson S., O'Brien H., Nelsen M.P., Duque-Thus R., Grube M., Friedl T., Brodie J., Andrew C.J., Lucking R., Lutzoni F. & Gueidan C. 2011. Revisiting photobiont diversity in the lichen family Verrucariaceae (Ascomycota). European Journal of Phycology 46: 399–415.
  • van den Hoek C., Mann D.G. & Jahns H.M. 1995. Algae: an introduction to phycology. Cambridge University Press, Cambridge, UK, 623 pp.
  • Verbruggen H. & Schils T. 2012. Rhipilia coppejansii, a new coral reef associated species from Guam (Bryopsidales, Chlorophyta). Journal of Phycology 48: 1090–1098.
  • Verbruggen H., De Clerck O., N'Yeurt A.D.R., Spalding H. & Vroom P.S. 2006. Phylogeny and taxonomy of Halimeda incrassata, including descriptions of H. kanaloana and H. heteromorpha spp. nov (Bryopsidales, Chlorophyta). European Journal of Phycology 41: 337–362.
  • Verbruggen H., Littler D.S. & Littler M.M. 2007. Halimeda pygmaea and Halimeda pumila (Bryopsidales, Chlorophyta): two new dwarf species from fore reef slopes in Fiji and the Bahamas. Phycologia 46: 513–520.
  • Vermeij G.J. & Roopnarine P.D. 2008. The coming Arctic invasion. Science 321: 780–781.
  • Waern M. 1952. Rocky-shore algae in the Öregrund Archipelago. Acta Phytogeographica Suecica 30: 1–298.
  • Wakasugi T., Nagai T., Kapoor M., Sugita M., Ito M., Tsudzuki J., Nakashima K., Tsudzuki T., Suziki Y., Hamada A., Ohta T., Inamura A., Yoshinaga K. & Sugiura M. 1997. Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division. Proceedings of the National Academy of Sciences of the USA 94: 5967–5972.
  • Wolf M.A., Sciuto K., Andreoli C. & Moro I. 2012. Ulva (Chlorophyta, Ulvales) biodiversity in the North Adriatic Sea (Mediterranean, Italy): cryptic species and new introductions. Journal of Phycology 48: 1510–1521.

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