Diversity of Halimeda (Chlorophyta) from the Thai–Malay Peninsula

REFERENCES

• Ang P.O., Sin Man Leung J.R. & Choi M.M. 2014. A verification of reports of marine algal species from the Philippines. Philippine Journal of Science, Special Issue 142: 5–49.
   Google Scholar
• Atmadja W.S. & Prud'Homme Van Reine W.F. 2014. Checklist of the seaweed species biodiversity of Indonesia with their distribution and classification: green algae (Chlorophyta) and brown algae (Phaeophyceae, Ochrophyta). Naturalis Biodiversity Centre, Indonesian Institute of Sciences (LIPI), Leiden & Indonesia. pp. 1–59.
   Google Scholar
• Barber P.H., Erdmann M.V. & Palumbi S.R. 2006. Comparative phylogeography of three codistributed stomatopods: origins and timing of regional lineage diversification in the Coral Triangle. Evolution 60: 1825–1839.
   Web of Science ®Google Scholar
• Barton E.S. 1901. The genus Halimeda. Siboga-Expeditie Monographe LX of: Uitkomsten op Zoologisch, Botanisch, Oceanographisch en Geologisch Gebied verzameld in Nederlandsch Oost-Indie 1899–1900. 60: 1–32.
   Google Scholar
• Bay L.K., Choat J.H., Van Herwerden L. & Robertson D.R. 2004. High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? Marine Biology 144: 757–767.
   Web of Science ®Google Scholar
• Briggs J.C. 2005. The marine East Indies: diversity and speciation. Journal of Biogeography 32: 1517–1522.
   Web of Science ®Google Scholar
• Buranapratheprat A. 2008. Circulation in the upper Gulf of Thailand: a review. Burapha Science Journal 13: 75–83.
   Google Scholar
• Buranapratheprat A. & Bunpapong M. 1998. Two-dimensional hydrodynamic model of seasonal variation in circulation in the Gulf of Thailand. Thai Journal of Aquatic Science 4: 27–39.
   Google Scholar
• Buranapratheprat A., Yanagi T. & Sawangwong P. 2002. Seasonal variations in circulation and salinity distributions in the upper Gulf of Thailand. La Mer 40: 147–155.
   Google Scholar
• Carpenter K.E., Barber P.H., Crandall E.D., Ablan-Lagman M.C.A., Ambariyanto Mahardika G.N., Manjaji-Matsumoto B.M., Juinio-Meñez M.A., Santos M.D., Starger C.J. & Tohaa H.A. 2010. Comparative phylogeography of the coral triangle and implications for marine management. Journal of Marine Biology 2011: 1–14.
   Google Scholar
• Clifton K.E. 1997. Mass spawning by green algae on coral reefs. Science 275: 1116–1118.
   PubMed Web of Science ®Google Scholar
• Clifton K.E. & Clifton L.M. 1999. The phenology of sexual reproduction by green algae (Bryopsidales) on Caribbean coral reefs. Journal of Phycology 35: 24–34.
   Web of Science ®Google Scholar
• Coppejans E., Leliaert F., Dargent O. & De Clerck O. 2001. Marine green algae (Chlorophyta) from the north coast of Papua New Guinea. Cryptogamie Algologie 22: 375–443.
   Web of Science ®Google Scholar
• Darriba D., Taboada G.L., Doallo R. & Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772 pp.
   PubMed Web of Science ®Google Scholar
• De Senerpont Domis. L.N., Famà P., Bartlett A.J., Prud'homme van Reine W. F., Armenta-Espinosa C. & Trono G.C. Jr. 2003. Defining taxon boundaries in members of the morphologically and genetically plastic genus Caulerpa (Caulerpales, Chlorophyta). Journal of Phycology 39: 1019–1037.
   Web of Science ®Google Scholar
• Dijoux L., Verbruggen H., Mattio L., Duong N. & Payri C. 2012. Diversity of Halimeda (Bryopsidales, Chlorophyta) in New Caledonia: a combined morphological and molecular study. Journal of Phycology 48: 1465–1481.
   PubMed Web of Science ®Google Scholar
• Drew E.A. & Abel K.M. 1988. Studies on Halimeda II. Reproduction, particularly the seasonality of gametangia formation, in a number of species from the Great Barrier Reef Province. Coral Reefs 6: 207–218.
   Web of Science ®Google Scholar
• El-Manawy I.M. & Shafik M.A. 2008. Morphological characterization of Halimeda (Lamouroux) from different biotopes on the Red Sea Coral Reefs on Egypt. American–Eurasian Journal of Agriculture and Environment 3: 532–538.
   Google Scholar
• Fleminger A. 1986. The Pleistocene equatorial barrier between the Indian and Pacific Oceans and a likely cause for Wallace's line. UNESCO Technical Papers in Marine Science 49: 84–97.
   Google Scholar
• Gaither M.R., Toonen R.J., Robertson D.R., Planes S. & Bowen B.W. 2010. Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus). Journal of Biogeography 37: 133–147.
   Web of Science ®Google Scholar
• Gilmartin M. 1960. The ecological distribution of the deep water algae of Eniwetok. Ecology 41: 210–221.
   Web of Science ®Google Scholar
• Guindon S. & Gascuel O. 2003. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology 52: 696–704.
   PubMed Web of Science ®Google Scholar
• Guiry M.D. & Guiry G.M. 2013. AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; searched on 12 June 2014.
   Google Scholar
• Hillis-Colinvaux L. 1980. Ecology and taxonomy of Halimeda: primary producer of coral reefs. Advances in Marine Biology 17: 1–327.
   Google Scholar
• Kaandorp J.A. 1999. Morphological analysis of growth forms of branching marine sessile organisms along environmental gradients. Marine Biology 134: 295–306.
   Web of Science ®Google Scholar
• Khokiattiwong S. & Limpsaichol P. 1995. The dynamic variation of water circulation in the Andaman Sea, Thailand. Manuscript, Department of Fisheries, Thailand.
   Google Scholar
• Kittiwattanawong K. 1997. Genetic structure of Giant clam, Tridacna maxima in the Andaman Sea, Thailand. Phuket Marine Biological Center Special Special 17: 109–114.
   Google Scholar
• Knittweis L., Kraemer W.E., Timm J. & Kochzius M. 2009. Genetic structure of Heliofungia actiniformis (Scleractinia: Fungiidae) populations in the Indo-Malay Archipelago: implications for live coral trade management efforts. Conservation Genetics 10: 241–224.
   Web of Science ®Google Scholar
• Kooistra W.H.C.F. & Verbruggen H. 2005. Genetic patterns in the calcified tropical seaweeds Halimeda opuntia, H. distorta, H. hederacea, and H. minima (Bryopsidales, Chlorophyta) provide insights in species boundaries and interoceanic dispersal. Journal of Phycology 41: 177–187.
   Web of Science ®Google Scholar
• Kooistra W.H.C.F., Coppejans E. & Payri C. 2002. Molecular systematics, historical ecology, and phylogeography of Halimeda (Bryopsidales). Molecular Phylogenetics and Evolution 24: 121–138.
   PubMed Web of Science ®Google Scholar
• Latypov Y.Y. 2003. Reef-building corals and reefs of Vietnam: 1. Gulf of Thailand. Russian Journal of Marine Biology 29: S22–S33.
   Google Scholar
• Lewis J.A. 1987. Checklist and bibliography of benthic marine macroalgae recorded from northern Australia III. Chlorophyta. Department of Defense. Defense Science and Technology Organisation. Materials Research Laboratories, Melbourne, Victoria, Report MRL-R-1063, pp. 1–56.
   Google Scholar
• Littler M.M., Littler D.S. & Lapointe B.E. 1988. A comparison of nutrient and light limited photosynthesis in psammophytic versus epilithic forms of Halimeda (Caulerpales, Halimedaceae) from the Bahamas. Coral Reefs 6: 219–225.
   Web of Science ®Google Scholar
• Lobban C.S. & Harrison P.J. 1994. Seaweed ecology and physiology. Cambridge University Press, New York. 366 pp.
   Google Scholar
• Lourie S. & Vincent A.C.J. 2004. A marine fish follows Wallace's Line: the phylogeography of the three-spot seahorse (Hippocampus trimaculatus, Syngnathidae, Teleostei) in Southeast Asia. Journal of Biogeography 31: 1975–1985.
   Web of Science ®Google Scholar
• McGlathery K.J., Howarth R.W. & Marino R. 1992. Nutrient limitation of the macroalga, Penicillus capitatus, associates with subtropical seagrass meadows in Bermuda. Estuaries 15: 18–25.
   Google Scholar
• McCune B. & Grace J.B. 2002. Analysis of ecological communities. MjM Software, Gleneden Beach, Oregon, USA. http://www.pcord.com. 304 pp.
   Google Scholar
• Morton B. & Blackmore G. 2001. South China Sea. Marine Pollution Bulletin 42: 1236–1263.
   PubMed Web of Science ®Google Scholar
• Nguyen V.X., Detcharoen M., Tuntiprapas P., Soe-Htun U., Sidik J.B., Harah M.Z., Prathep A. & Papenbrock J. 2014. Genetic species identification and population structure of Halophila (Hydrocharitaceae) from the Western Pacific to the Eastern Indian Ocean. BMC Evolutionary Biology 14: 92–110.
   PubMed Web of Science ®Google Scholar
• Payri C.E. & Meinesz A. 1985. Taxonomy and distribution of the genus Halimeda (Chlorophyta, Caulerpales) in French Polynesia. Coral Reef Congress 6: 641–648.
   Google Scholar
• Payri C.E., N'Yeurt A.D.R. & Orempuller J. 2000. Algae of French Polynesia. Au Vent des Iles, Tahiti, French Polynesia. 320 pp.
   Google Scholar
• Phang S.M., Sim M.C., Yow Y.Y., Yeong H.Y. & Lim P.E. 2013. Halimeda (Bryopsidales, Chlorophyta) from the Sulu-Sulawesi region and Layang-Layang Island of Malaysia. In: Taxonomy of Southeast Asian seaweeds II (Ed. by S.M. Phang & P.E. Lim), Institute of Ocean and Earth Sciences, University of Malaya Monograph Series 15: 1–38.
   Google Scholar
• Pongparadon S. 2010. Diversity, distribution and variations within species of genus Halimeda J.V. Lamour. (Chlorophyta) in Peninsular Thailand. MSc thesis. Prince of Songkla University. 117 pp.
   Google Scholar
• Pongparadon S. & Prathep A. 2013. Diversity and distribution of the genus Halimeda J.V. Lamour. (Chlorophyta) in Peninsular Thailand. In: Taxonomy of Southeast Asian seaweeds II (Ed. by S.M. Phang & P.E. Lim), Institute of Ocean and Earth Sciences, University of Malaya Monograph Series 15: 39–64.
   Google Scholar
• Rocha L.A., Craig M.T. & Bowen B.W. 2007. Phylogeography and the conservation of coral reef fishes. Coral Reefs 26: 501–512.
   Web of Science ®Google Scholar
• Rogers R.W. 1996. Spatial, seasonal, and secular patterns in the cover of green algae on Heron Reef Flat, Great Barrier Reef, Australia. Botanica Marina 39: 415–419.
   Web of Science ®Google Scholar
• Ronquist F. & Huelsenbeck J.P. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
   PubMed Web of Science ®Google Scholar
• Saunders G.W.S. & Kucera H. 2010. An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae. Cryptogamie Algologie 31: 487–528.
   Web of Science ®Google Scholar
• Silva P.C., Meñez E.G. & Moe R.L. 1987. Catalog of the benthic marine algae of the Philippines. Smithsonian Contributions to Marine Sciences 27: 1–179.
   Google Scholar
• Silva P.C., Basson P.W. & Moe R.L. 1996. Catalogue of the benthic marine algae of the Indian Ocean. University of California. Botany 79: 1–1259.
   Google Scholar
• Spalding M.D., Fox H.E., Allen G.R., Davidson N., Ferdaña Z.A., Finlayson M., Halpern B.S., Jorge M.A., Lombana A., Lourie S.A., Martin K.D., Mcmanus E., Molnar J., Recchia C.A. & Robertson J. 2007. Marine ecoregions of the world: a bioregionalization of coast and shelf areas. BioScience 57: 573–583.
   Web of Science ®Google Scholar
• Stamatakis A. 2006. Phylogenetic models of rate heterogeneity: a high performance computing perspective. Proceedings of the IPDPS2006, HICOMB Workshop, Proceedings on CD. Rhodos, Greece.
   Google Scholar
• Taylor W.R. 1960. Marine algae of the eastern tropical and subtropical coasts of the Americas. University of Michigan Press, Ann Arbor. 870 pp.
   Google Scholar
• Terrados J. & Ros J.D. 1992. The influence of temperature on seasonal variation of Caulerpa prolifera (Forsskal) Lamouroux photosynthesis and respiration. Journal of Experimental Marine Biology and Ecology 162: 199–212.
   Web of Science ®Google Scholar
• Thomson D. & Henry R. 1995. Single-step protocol for preparation of plant tissues for analysis by PCR. Biotechniques 19: 394–400.
   PubMed Web of Science ®Google Scholar
• Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. & Higgins D.G. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 15: 4876–4882.
   Web of Science ®Google Scholar
• Van Tussenbroek B.I., Barba Santos M.G. & Van Dijk J.K. 2006. Unusual synchronous spawning by green algae (Bryopsidales), after the passage of Hurricane Wilma (2005). Botanica Marina 49: 270–271.
   Web of Science ®Google Scholar
• Verbruggen H. 2005a. Resegmenting Halimeda molecular and morphometric studies of species boundaries within a green algal genus. DSc thesis. Ghent University, Ghent, Belgium. 214 pp.
   Google Scholar
• Verbruggen H. & Kooistra W.H.C.F. 2004. Morphological characterization of lineages within the calcified tropical seaweed genus Halimeda (Bryopsidales, Chlorophyta). European Journal of Phycology 39: 213–228.
   Web of Science ®Google Scholar
• Verbruggen H., De Clerck O. & Coppejans E. 2005b. Deviant segments hamper a morphometric approach towards Halimeda taxonomy. Cryptogamie Algologie 26: 259–274.
   Web of Science ®Google Scholar
• Verbruggen H., De Clerck O., Cocquyt E., Kooistra W.H.C.F. & Coppejans E. 2005c. Morphometric taxonomy of siphonous green algae: a methodological study within the genus Halimeda (Bryopsidales). Journal of Phycology 41: 126–139.
   Web of Science ®Google Scholar
• Verbruggen H., De Clerck O., Kooistra W.H.C.F. & Coppejans E. 2005d. Molecular and morphometric data pinpoint species boundaries in Halimeda Section Rhipsalis (Bryopsidales, Chlorophyta). Journal of Phycology 41: 606–621.
   Web of Science ®Google Scholar
• Verbruggen H., De Clerck O., Schils T., Kooistra W.H.C.F. & Coppejans E. 2005e. Evolution and phylogeography of Halimeda section Halimeda (Bryopsidales, Chlorophyta). Molecular Phylogenetics and Evolution 37: 789–803.
   PubMed Web of Science ®Google Scholar
• Verbruggen H., De Clerck O., N'Yeurt A.D.R., Spalding H. & Vroom P.S. 2006. Phylogeny and taxonomy of Halimeda incrassata, including descriptions of H. kanaloana and H. heteromorpha spp. nov. (Bryopsidales, Chlorophyta). European Journal of Phycology 41: 337–362.
   Web of Science ®Google Scholar
• Verbruggen H., Littler D.S. & Littler M.M. 2007. Halimeda pygmaea and Halimeda pumila (Bryopsidales, Chlorophyta): two new dwarf species from fore reef slopes in Fiji and the Bahamas. Phycologia 46: 513–520.
   Web of Science ®Google Scholar
• Verbruggen H., Tyberghein L., Pauly K., Vlaeminck C., Nieuwenhuyze K.V., Kooistra W.H.C.F., Leliaert F. & De Clerck O. 2009. Macroecology meets macroevolution: evolutionary niche dynamics in the seaweed I. Global Ecology and Biogeography 18: 393–405.
   Web of Science ®Google Scholar
• Verheij E. & Prud'Homme van Reine W.F. 1993. Seaweeds of the Spermonde Archipelago, SW Sulawesi, Indonesia. Blumea 37: 385–510.
   Web of Science ®Google Scholar
• Vroom P.S. & Smith C.M. 2003. Reproductive features of Hawaiian Halimeda velasquezii (Bryopsidales, Chlorophyta), and an evolutionary assessment of reproductive characters in Halimeda. Cryptogamie Algologie 24: 355–370.
   Web of Science ®Google Scholar
• Wichachucherd B., Prathep A. & Zuccarello G.C. 2014. Phylogeography of Padina boryana (Dictyotales, Phaeophyceae) around the Thai–Malay Peninsula. European Journal of Phycology 49: 313–323.
   Web of Science ®Google Scholar
• Williams S.L. & Dennison W.C. 1990. Light availability and diurnal growth of a green macroalgae (Caulerpa cupressoides) and a seagrass (Halophila decipiens). Botanica Marina 106: 437–443.
   Google Scholar
• Wyrtki K. 1961. Physical oceanography of the Southeast Asian waters. Scientific results of marine investigations of the South China Sea and the Gulf of Thailand 1959–1961. NAGA Report 2. 225 pp.
   Google Scholar