References
- Perino M , VeenstraGJ . Chromatin control of developmental dynamics and plasticity . Dev. Cell38 ( 6 ), 610 – 620 ( 2016 ).
- Smith ZD , MeissnerA . DNA methylation: roles in mammalian development . Nat. Rev. Genet.14 ( 3 ), 204 – 220 ( 2013 ).
- Stein R , RazinA , CedarH . In vitro methylation of the hamster adenine phosphoribosyltransferase gene inhibits its expression in mouse L cells . Proc. Natl Acad. Sci. USA79 ( 11 ), 3418 – 3422 ( 1982 ).
- Bestor TH , EdwardsJR , BoulardM . Notes on the role of dynamic DNA methylation in mammalian development . Proc. Natl Acad. Sci. USA112 ( 22 ), 6796 – 6799 ( 2015 ).
- Hontelez S , Van KruijsbergenI , GeorgiouGet al. Embryonic transcription is controlled by maternally defined chromatin state . Nat. Commun.6 , 10148 ( 2015 ).
- Bogdanovic O , SmitsAH , De La Calle MustienesEet al. Active DNA demethylation at enhancers during the vertebrate phylotypic period . Nat. Genet.48 ( 4 ), 417 – 426 ( 2016 ).
- Dai HQ , WangBA , YangLet al. TET-mediated DNA demethylation controls gastrulation by regulating Lefty-Nodal signalling . Nature538 ( 7626 ), 528 – 532 ( 2016 ).
- Pastor WA , AravindL , RaoA . TETonic shift: biological roles of TET proteins in DNA demethylation and transcription . Nat. Rev. Mol. Cell Biol.14 ( 6 ), 341 – 356 ( 2013 ).
- Gu TP , GuoF , YangHet al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes . Nature477 ( 7366 ), 606 – 610 ( 2011 ).
- Shen L , InoueA , HeJ , LiuY , LuF , ZhangY . Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes . Cell Stem Cell15 ( 4 ), 459 – 470 ( 2014 ).
- Inoue A , ShenL , MatobaS , ZhangY . Haploinsufficiency, but not defective paternal 5mC oxidation, accounts for the developmental defects of maternal Tet3 knockouts . Cell Rep.10 ( 4 ), 463 – 470 ( 2015 ).
- Dawlaty MM , BreilingA , LeTet al. Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development . Dev. Cell24 ( 3 ), 310 – 323 ( 2013 ).
- Potok ME , NixDA , ParnellTJ , CairnsBR . Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern . Cell153 ( 4 ), 759 – 772 ( 2013 ).
- Jiang L , ZhangJ , WangJJet al. Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos . Cell153 ( 4 ), 773 – 784 ( 2013 ).
- Almeida RD , LooseM , SottileVet al. 5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development . Epigenetics7 ( 4 ), 383 – 389 ( 2012 ).
- Li C , LanY , Schwartz-OrbachLet al. Overlapping requirements for Tet2 and Tet3 in normal development and hematopoietic stem cell emergence . Cell Rep.12 ( 7 ), 1133 – 1143 ( 2015 ).
- Domazet-Loso T , TautzD . A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns . Nature468 ( 7325 ), 815 – 818 ( 2010 ).
- Hore TA , Von MeyennF , RavichandranMet al. Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naive pluripotency by complementary mechanisms . Proc. Natl Acad. Sci. USA113 ( 43 ), 12202 – 12207 ( 2016 ).
- Ding J , HuangX , ShaoNet al. Tex10 coordinates epigenetic control of super-enhancer activity in pluripotency and reprogramming . Cell Stem Cell16 ( 6 ), 653 – 668 ( 2015 ).
- Deplus R , DelatteB , SchwinnMKet al. TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS . EMBO J.32 ( 5 ), 645 – 655 ( 2013 ).