Altered Expression Profile of Circular RNAs in Conjunctival Melanoma

References

• Mccartney AC . Pathology of ocular melanomas . Br. Med. Bull.51 ( 3 ), 678 – 693 ( 1995 ).
   PubMed Web of Science ®Google Scholar
• Shields CL , ShieldsJA , GunduzKet al. Conjunctival melanoma: risk factors for recurrence, exenteration, metastasis, and death in 150 consecutive patients . Arch. Ophthalmol.118 ( 11 ), 1497 – 1507 ( 2000 ).
   PubMedGoogle Scholar
• Errington JA , ConwayRM , Walsh-ConwayNet al. Expression of cancer-testis antigens (MAGE-A1, MAGE-A3/6, MAGE-A4, MAGE-C1 and NY-ESO-1) in primary human uveal and conjunctival melanoma . Br. J. Ophthalmol.96 ( 3 ), 451 – 458 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Tuomaala S , EskelinS , TarkkanenA , KivelaT . Population-based assessment of clinical characteristics predicting outcome of conjunctival melanoma in whites . Invest. Ophthalmol. Vis. Sci.43 ( 11 ), 3399 – 3408 ( 2002 ).
   PubMed Web of Science ®Google Scholar
• Missotten GS , KeijserS , DeKeizer RJ , DeWolff-Rouendaal D . Conjunctival melanoma in The Netherlands: a nationwide study . Invest. Ophthalmol. Vis. Sci.46 ( 1 ), 75 – 82 ( 2005 ).
   PubMed Web of Science ®Google Scholar
• Van Raamsdonk CD , GriewankKG , CrosbyMBet al. Mutations in GNA11 in uveal melanoma . N. Engl. J. Med.363 ( 23 ), 2191 – 2199 ( 2010 ).
   PubMed Web of Science ®Google Scholar
• Westekemper H , KarimiS , SusskindDet al. Expression of HSP 90, PTEN and Bcl-2 in conjunctival melanoma . Br. J. Ophthalmol.95 ( 6 ), 853 – 858 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Zoroquiain P , FernandesBF , GonzalezS , NovaisGN , SchalperKA , BurnierMN , Jr. p16ink4a expression in benign and malignant melanocytic conjunctival lesions . Int. J. Surg. Pathol.20 ( 3 ), 240 – 245 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Salzman J , GawadC , WangPL , LacayoN , BrownPO . Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types . PLoS ONE7 ( 2 ), e30733 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Liang D , WiluszJE . Short intronic repeat sequences facilitate circular RNA production . Genes Dev.28 ( 20 ), 2233 – 2247 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Cocquerelle C , MascrezB , HetuinD , BailleulB . Mis-splicing yields circular RNA molecules . FASEB J.7 ( 1 ), 155 – 160 ( 1993 ).
   PubMed Web of Science ®Google Scholar
• Memczak S , JensM , ElefsiniotiAet al. Circular RNAs are a large class of animal RNAs with regulatory potency . Nature495 ( 7441 ), 333 – 338 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Yu CY , LiTC , WuYYet al. The circular RNA circBIRC6 participates in the molecular circuitry controlling human pluripotency . Nat. Commun.8 ( 1 ), 1149 ( 2017 ).
   PubMed Web of Science ®Google Scholar
• Conn SJ , PillmanKA , ToubiaJet al. The RNA binding protein quaking regulates formation of circRNAs . Cell160 ( 6 ), 1125 – 1134 ( 2015 ).
   PubMed Web of Science ®Google Scholar
• Xia P , WangS , YeBet al. A circular RNA protects dormant hematopoietic stem cells from DNA sensor cGAS-mediated exhaustion . Immunity48 ( 4 ), 688 – 701 , e687 ( 2018 ).
   PubMed Web of Science ®Google Scholar
• Jeck WR , SorrentinoJA , WangKet al. Circular RNAs are abundant, conserved, and associated with ALU repeats . RNA19 ( 2 ), 141 – 157 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Salmena L , PolisenoL , TayY , KatsL , PandolfiPP . A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?Cell146 ( 3 ), 353 – 358 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Li Z , HuangC , BaoCet al. Exon–intron circular RNAs regulate transcription in the nucleus . Nat. Struct. Mol. Biol.22 ( 3 ), 256 – 264 ( 2015 ).
   PubMed Web of Science ®Google Scholar
• Hansen TB , WiklundED , BramsenJBet al. miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA . EMBO J.30 ( 21 ), 4414 – 4422 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Zhang M , ZhaoK , XuXet al. A peptide encoded by circular form of LINC-PINT suppresses oncogenic transcriptional elongation in glioblastoma . Nat. Commun.9 ( 1 ), 4475 ( 2018 ).
   PubMed Web of Science ®Google Scholar
• Le Poole IC , VanDen Berg FM , VanDen Wijngaard RMet al. Generation of a human melanocyte cell line by introduction of HPV16 E6 and E7 genes . In Vitro Cell Dev. Biol. Anim.33 ( 1 ), 42 – 49 ( 1997 ).
   PubMed Web of Science ®Google Scholar
• Xu S , WangH , PanHet al. ANRIL lncRNA triggers efficient therapeutic efficacy by reprogramming the aberrant INK4-hub in melanoma . Cancer Lett.381 ( 1 ), 41 – 48 ( 2016 ).
   PubMed Web of Science ®Google Scholar
• Gao Y , WangJ , ZhaoF . CIRI: an efficient and unbiased algorithm for de novo circular RNA identification . Genome Biol.16 , 4 ( 2015 ).
   PubMed Web of Science ®Google Scholar
• Gu Y , LiuS , ZhangXet al. Oncogenic miR-19a and miR-19b co-regulate tumor suppressor MTUS1 to promote cell proliferation and migration in lung cancer . Protein Cell8 ( 6 ), 455 – 466 ( 2017 ).
   PubMed Web of Science ®Google Scholar
• Frank B , BermejoJL , HemminkiKet al. Copy number variant in the candidate tumor suppressor gene MTUS1 and familial breast cancer risk . Carcinogenesis28 ( 7 ), 1442 – 1445 ( 2007 ).
   PubMed Web of Science ®Google Scholar
• Rogler A , HojaS , GiedlJet al. Loss of MTUS1/ATIP expression is associated with adverse outcome in advanced bladder carcinomas: data from a retrospective study . BMC Cancer14 , 214 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Ding X , ZhangN , CaiYet al. Downregulation of tumor suppressor MTUS1/ATIP is associated with enhanced proliferation, poor differentiation and poor prognosis in oral tongue squamous cell carcinoma . Mol. Oncol.6 ( 1 ), 73 – 80 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Zuern C , HeimrichJ , KaufmannRet al. Downregulation of MTUS1 in human colon tumors . Oncol. Rep.23 ( 1 ), 183 – 189 ( 2010 ).
   PubMed Web of Science ®Google Scholar
• Dudekula DB , PandaAC , GrammatikakisI , DeS , AbdelmohsenK , GorospeM . CircInteractome: a web tool for exploring circular RNAs and their interacting proteins and microRNAs . RNA Biol.13 ( 1 ), 34 – 42 ( 2016 ).
   PubMed Web of Science ®Google Scholar
• Wong N , WangX . miRDB: an online resource for microRNA target prediction and functional annotations . Nucleic Acids Res.43 ( Database issue ), D146 – 152 ( 2015 ).
   PubMedGoogle Scholar
• Agarwal V , BellGW , NamJW , BartelDP . Predicting effective microRNA target sites in mammalian mRNAs . Elife4 ( 2015 ).
   Web of Science ®Google Scholar
• Dweep H , StichtC , PandeyP , GretzN . miRWalk–database: prediction of possible miRNA binding sites by ‘walking’ the genes of three genomes . J. Biomed. Inform.44 ( 5 ), 839 – 847 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Szklarczyk D , MorrisJH , CookHet al. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible . Nucleic Acids Res.45 ( D1 ), D362 – D368 ( 2017 ).
   PubMed Web of Science ®Google Scholar
• Pandey GK , MitraS , SubhashSet al. The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation . Cancer Cell26 ( 5 ), 722 – 737 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Song X , FanJ , JiaRet al. Identification and regulation pattern analysis of long noncoding RNAs in meibomian gland carcinoma . Epigenomics11 ( 4 ), 381 – 400 ( 2019 ).
   PubMed Web of Science ®Google Scholar
• Chai P , JiaR , JiaRet al. Dynamic chromosomal tuning of a novel GAU1 lncing driver at chr12p13.32 accelerates tumorigenesis . Nucleic Acids Res.46 ( 12 ), 6041 – 6056 ( 2018 ).
   PubMed Web of Science ®Google Scholar
• Shang Q , YangZ , JiaR , GeS . The novel roles of circRNAs in human cancer . Mol. Cancer18 ( 1 ), 6 ( 2019 ).
   PubMed Web of Science ®Google Scholar
• Zheng Q , BaoC , GuoWet al. Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs . Nat. Commun.7 , 11215 ( 2016 ).
   PubMed Web of Science ®Google Scholar
• Zeng K , ChenX , XuMet al. CircHIPK3 promotes colorectal cancer growth and metastasis by sponging miR-7 . Cell Death Dis9 ( 4 ), 417 ( 2018 ).
   PubMed Web of Science ®Google Scholar
• Li Y , ZhengF , XiaoXet al. CircHIPK3 sponges miR-558 to suppress heparanase expression in bladder cancer cells . EMBO Rep.18 ( 9 ), 1646 – 1659 ( 2017 ).
   PubMed Web of Science ®Google Scholar
• Yang C , YuanW , YangXet al. Circular RNA circ-ITCH inhibits bladder cancer progression by sponging miR-17/miR-224 and regulatingp21, PTEN expression . Mol. Cancer17 ( 1 ), 19 ( 2018 ).
   PubMed Web of Science ®Google Scholar
• Dietrich P , KuphalS , SprussT , HellerbrandC , BosserhoffAK . MicroRNA-622 is a novel mediator of tumorigenicity in melanoma by targeting Kirsten rat sarcoma . Pigment. Cell Melanoma Res.31 ( 5 ), 614 – 629 ( 2018 ).
   PubMed Web of Science ®Google Scholar