Methylome of Skeletal Muscle Tissue in Patients with Hypertension and Diabetes Undergoing Cardiopulmonary Bypass

References

• Egger G , LiangG , AparicioA , JonesPA. Epigenetics in human disease and prospects for epigenetic therapy. Nature429(6990), 457–463 (2004).
   PubMed Web of Science ®Google Scholar
• Lirk P , FieglH , WeberNC , HollmannMW. Epigenetics in the perioperative period: perioperative epigenetics. Br. J. Pharmacol.172(11), 2748–2755 (2015).
   PubMed Web of Science ®Google Scholar
• Mauck M , Vande Ven T , ShawAD. Epigenetics of chronic pain after thoracic surgery. Curr. Opin. Anaesthesiol.27(1), 1–5 (2014).
   PubMed Web of Science ®Google Scholar
• Ti D , LiM , FuX , HanW. Causes and consequences of epigenetic regulation in wound healing: epigenetic alteration in wound healing. Wound Repair Regen.22(3), 305–312 (2014).
   PubMed Web of Science ®Google Scholar
• Reinhold AK , JenthoE , SchäferST , BauerM , RittnerHL. Epigenetics: important aspects for anesthesiologists, pain and intensive care physicians. Anaesthesist67(4), 246–254 (2018).
   PubMed Web of Science ®Google Scholar
• Mann J , MannDA. Epigenetic regulation of wound healing and fibrosis. Curr. Opin. Rheumatol.25(1), 101–107 (2013).
   PubMed Web of Science ®Google Scholar
• Sadahiro R , KnightB , JamesFet al. Major surgery induces acute changes in measured DNA methylation associated with immune response pathways. Sci. Rep.10(1), 5743 (2020).
   PubMed Web of Science ®Google Scholar
• Petrie JR , GuzikTJ , TouyzRM. Diabetes, hypertension, and cardiovascular disease: clinical insights and vascular mechanisms. Can. J. Cardiol.34(5), 575–584 (2017).
   PubMed Web of Science ®Google Scholar
• Thourani VH , WeintraubWS , SteinBet al. Influence of diabetes mellitus on early and late outcome after coronary artery bypass grafting. Ann. Thorac. Surg.67(4), 1045–1052 (1999).
   PubMed Web of Science ®Google Scholar
• Aronson S , BoisvertD , LappW. Isolated systolic hypertension is associated with adverse outcomes from coronary artery bypass grafting surgery. Anesth. Analg.94(5), 1079–1084 (2002).
   PubMed Web of Science ®Google Scholar
• Carson C , LawsonHA. Epigenetics of metabolic syndrome. Physiol. Genomics50, 947–955 (2018).
   PubMed Web of Science ®Google Scholar
• Barres R . Zierath JR DNA methylation in metabolic disorders. Am. J. Clin. Nutr.93, S897–S900 (2011).
   PubMed Web of Science ®Google Scholar
• Whelton PK , CareyRM , AronowWSet al. 2017 ACC/AHA/AAPA/ABC/ACPM/AGS/APhA/ASH/ASPC/NMA/PCNA Guideline for the prevention, detection, evaluation, and management of high blood pressure in adults. J. Am. Coll. Cardiol.71(19), e127–e248 (2018).
   PubMed Web of Science ®Google Scholar
• Fortin JP , LabbeA , LemireMet al. Functional normalization of 450k methylation array data improves replication in large cancer studies. Genome Biol.15(11), 503 (2014).
   PubMedGoogle Scholar
• Triche TJ , WeisenbergerDJ , VanDen Berg D , LairdPW , SiegmundKD. Low-level processing of Illumina Infinium DNA Methylation BeadArrays. Nucleic Acids Res.41(7), e90–e90 (2013).
   PubMed Web of Science ®Google Scholar
• Du P , ZhangX , HuangCCet al. Comparison of beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics11(1), 587 (2010).
   PubMedGoogle Scholar
• Benjamini Y , HochbergY. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B Stat. Methodol.57, 289–300 (1995).
   Google Scholar
• Green GH , DigglePJ. On the operational characteristics of the Benjamini and Hochberg false discovery rate procedure. Stat. Appl. Genet. Mol. Biol.6, Article27 (2007).
   PubMed Web of Science ®Google Scholar
• Mansell G , Gorrie-StoneTJ , BaoYet al. Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array. BMC Genomics20(1), 366 (2019).
   PubMedGoogle Scholar
• Boopathy GTK , HongW. Role of Hippo pathway-YAP/TAZ signaling in angiogenesis. Front. Cell Dev. Biol.7, 49 (2019).
   PubMed Web of Science ®Google Scholar
• Taylor DL , JacksonAU , NarisuNet al. Integrative analysis of gene expression, DNA methylation, physiological traits, and genetic variation in human skeletal muscle. Proc. Natl Acad. Sci. USA116(22), 10883–10888 (2019).
   PubMed Web of Science ®Google Scholar
• Turner DC , GorskiPP , MaasarMFet al. DNA methylation across the genome in aged human skeletal muscle tissue and muscle-derived cells: the role of HOX genes and physical activity. Sci. Rep.10(1), 15360 (2020).
   PubMed Web of Science ®Google Scholar
• Ling C , RönnT. Epigenetic adaptation to regular exercise in humans. Drug Discov. Today19(7), 1015–1018 (2014).
   PubMed Web of Science ®Google Scholar
• Rowlands DS , PageRA , SukalaWRet al. Multi-omic integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in Type 2 diabetic obesity. Physiol. Genomics46(20), 747–765 (2014).
   PubMed Web of Science ®Google Scholar
• Nitert MD , DayehT , VolkovPet al. Impact of an exercise intervention on DNA methylation in skeletal muscle from first-degree relatives of patients with Type 2 diabetes. Diabetes61(12), 3322–3332 (2012).
   PubMed Web of Science ®Google Scholar
• Demura M , SaijohK. The role of DNA methylation in hypertension. Adv. Exp. Med. Biol.956, 583–598 (2017).
   PubMed Web of Science ®Google Scholar
• Arif M , SadayappanS , BeckerRC , MartinLJ , UrbinaEM. Epigenetic modification: a regulatory mechanism in essential hypertension. Hypertens. Res.42(8), 1099–1113 (2019).
   PubMed Web of Science ®Google Scholar
• Ehrlich KC , LaceyM , EhrlichM. Epigenetics of skeletal muscle-associated genes in the ASB, LRRC, TMEM, and OSBPL gene families. Epigenomes4, 1 (2020).
   PubMed Web of Science ®Google Scholar
• Jacobsen SC , BrønsC , Bork-JensenJet al. Effects of short-term high-fat overfeeding on genome-wide DNA methylation in the skeletal muscle of healthy young men. Diabetologia55(12), 3341–3349 (2012).
   PubMed Web of Science ®Google Scholar
• Ling C , RönnT. Epigenetics in human obesity and Type 2 diabetes. Cell Metab.29(5), 1028–1044 (2019).
   PubMed Web of Science ®Google Scholar
• Villeneuve LM , ReddyMA , NatarajanR. Epigenetics: deciphering its role in diabetes and its chronic complications: chronic kidney disease. Clin. Exp. Pharmacol. Physiol.38(7), 451–459 (2011).
   PubMed Web of Science ®Google Scholar
• Gancheva S , OuniM , JelenikTet al. Dynamic changes of muscle insulin sensitivity after metabolic surgery. Nat. Commun.10(1), 4179 (2019).
   PubMedGoogle Scholar
• Seaborne RA , StraussJ , CocksMet al. Human skeletal muscle possesses an epigenetic memory of hypertrophy. Sci. Rep.8(1), 1898 (2018).
   PubMedGoogle Scholar
• Sharples AP , StewartCE , SeaborneRA. Does skeletal muscle have an ‘epi’-memory? The role of epigenetics in nutritional programming, metabolic disease, aging and exercise. Aging Cell15(4), 603–616 (2016).
   PubMed Web of Science ®Google Scholar
• Zoremba M , KornmannD , VojnarBet al. Recovery and prediction of postoperative muscle power – is it still a problem? BMC Anesthesiol. 17(1), 108 (2017).
   PubMedGoogle Scholar
• Bautmans I , VanDe Winkel N , AckermanAet al. Recovery of muscular performance after surgical stress in elderly patients. Curr. Pharm. Des.20(19), 3215–3221 (2014).
   PubMed Web of Science ®Google Scholar
• Kasch J , KanzleiterI , SaussenthalerSet al. Insulin sensitivity linked skeletal muscle Nr4a1 DNA methylation is programmed by the maternal diet and modulated by voluntary exercise in mice. J. Nutr. Biochem.57, 86–92 (2018).
   PubMed Web of Science ®Google Scholar
• Hartley I , ElkhouryFF , HeonShin Jet al. Long-lasting changes in DNA methylation following short-term hypoxic exposure in primary hippocampal neuronal cultures. PLoS ONE8(10), e77859 (2013).
   PubMed Web of Science ®Google Scholar
• Sandoval-Sierra JV , SalgadoGarcía FI , BrooksJH , DerefinkoKJ , MozhuiK. Effect of short-term prescription opioids on DNA methylation of the OPRM1 promoter. Clin. Epigenet.12(1), 76 (2020).
   PubMed Web of Science ®Google Scholar
• Tomiga Y , ItoA , SudoMet al. One week, but not 12 hours, of cast immobilization alters promotor DNA methylation patterns in the nNOS gene in mouse skeletal muscle. J. Physiol.597(21), 5145–5159 (2019).
   PubMed Web of Science ®Google Scholar
• Barrès R , YanJ , EganBet al. Acute exercise remodels promoter methylation in human skeletal muscle. Cell Metab.15(3), 405–411 (2012).
   PubMed Web of Science ®Google Scholar
• Saunderson EA , SpiersH , MifsudKRet al. Stress-induced gene expression and behavior are controlled by DNA methylation and methyl donor availability in the dentate gyrus. Proc. Natl Acad. Sci. USA113(17), 4830–4835 (2016).
   PubMed Web of Science ®Google Scholar
• Cedernaes J , OslerME , VoisinSet al. Acute sleep loss induces tissue-specific epigenetic and transcriptional alterations to circadian clock genes in men. J. Clin. Endocrinol. Metab.100(9), E1255–E1261 (2015).
   PubMed Web of Science ®Google Scholar
• Day JRS , TaylorKM. The systemic inflammatory response syndrome and cardiopulmonary bypass. Int. J. Surg.3(2), 129–140 (2005).
   PubMedGoogle Scholar
• Laudanski K , ZawadkaM , PolosakJet al. Acquired immunological imbalance after surgery with cardiopulmonary bypass due to epigenetic over-activation of PU.1/M-CSF. J. Transl. Med.16(1), 143 (2018).
   PubMedGoogle Scholar
• Cornell TT , SunL , HallMWet al. Clinical implications and molecular mechanisms of immunoparalysis after cardiopulmonary bypass. J. Thorac. Cardiovasc. Surg.143(5), 1160–1166.e1 (2012).
   PubMed Web of Science ®Google Scholar
• Kimball TH , MonteE , FischerM , MahajanA , VondriskaTM. Differentially methylated CpGs identify patients at risk of post-operative atrial fibrillation after cardiopulmonary bypass. Circulation134, A19954–A19954 (2016).
   Web of Science ®Google Scholar
• Piccolo S , DupontS , CordenonsiM. The biology of YAP/TAZ: Hippo signaling and beyond. Physiol. Reviews94(4), 1287–1312 (2014).
   PubMed Web of Science ®Google Scholar
• Paparella D . Cardiopulmonary bypass induced inflammation: pathophysiology and treatment. An update. Eur. J. Cardiothorac. Surg.21(2), 232–244 (2002).
   PubMed Web of Science ®Google Scholar
• Begue G , RaueU , JemioloB , TrappeS. DNA methylation assessment from human slow- and fast-twitch skeletal muscle fibers. J. Appl. Physiol.122(4), 952–967 (2017).
   PubMed Web of Science ®Google Scholar
• Baar K . Epigenetic control of skeletal muscle fibre type. Acta Physiol. (Oxf.)199(4), 477–487 (2010).
   PubMed Web of Science ®Google Scholar
• Stueve TR , MarconettCN , ZhouB , BorokZ , Laird-OffringaIA. The importance of detailed epigenomic profiling of different cell types within organs. Epigenomics8(6), 817–829 (2016).
   PubMed Web of Science ®Google Scholar
• Byun HM , SiegmundKD , PanFet al. Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns. Hum. Mol. Genet.18(24), 4808–4817 (2009).
   PubMed Web of Science ®Google Scholar