A Comprehensive Bioinformatic Analysis of RanBP9 Expression and Its Relation to Prognosis in Human Breast Cancer

References

• Sung H , FerlayJ , SiegelRLet al. Global Cancer Statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. Cancer Cancer J. Clin.71(3), 209–249 (2021).
   PubMed Web of Science ®Google Scholar
• Britt KL , CuzickJ , PhillipsKA. Key steps for effective breast cancer prevention. Nat. Rev. Cancer20(8), 417–436 (2020).
   PubMed Web of Science ®Google Scholar
• Zhang B , LiY , LiLet al. Association study of susceptibility loci with specific breast cancer subtypes in Chinese women. Breast Cancer Res. Treat.146(3), 503–514 (2014).
   PubMed Web of Science ®Google Scholar
• Perou CM , SørlieT , EisenMBet al. Molecular portraits of human breast tumours. Nature406(6797), 747–752 (2000).
   PubMed Web of Science ®Google Scholar
• Goldhirsch A , WoodWC , CoatesASet al. Strategies for subtypes – dealing with the diversity of breast cancer: highlights of the St. Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2011. Ann. Oncol.22(8), 1736–1747 (2011).
   PubMed Web of Science ®Google Scholar
• Burstein HJ , SomerfieldMR , BartonDLet al. Endocrine treatment and targeted therapy for hormone receptor-positive, human epidermal growth factor receptor 2-negative metastatic breast cancer: ASCO Guideline Update. J. Clin. Oncol. doi:10.1200/jco.21.01392Jco2101392 (2021) ( Epub ahead of print).
   Google Scholar
• Moy B , RumbleRB , ComeSEet al. Chemotherapy and Targeted therapy for patients with human epidermal growth factor receptor 2-negative metastatic breast cancer that is either endocrine-pretreated or hormone receptor-negative: ASCO guideline update. J. Clin. Oncol. doi:10.1200/jco.21.01374Jco2101374 (2021) ( Epub ahead of print).
   Google Scholar
• Rao MA , ChengH , QuayleANet al. RanBPM, a nuclear protein that interacts with and regulates transcriptional activity of androgen receptor and glucocorticoid receptor. J. Biol. Chem.277(50), 48020–48027 (2002).
   PubMed Web of Science ®Google Scholar
• Huffman N , PalmieriD , CoppolaV. The CTLH complex in cancer cell plasticity. J. Oncol.2019, 4216750 (2019).
   PubMed Web of Science ®Google Scholar
• Maitland MER , OneaG , ChiassonCAet al. The mammalian CTLH complex is an E3 ubiquitin ligase that targets its subunit muskelin for degradation. Sci. Rep.9(1), 9864 (2019).
   PubMedGoogle Scholar
• Salemi LM , MaitlandMER , MctavishCJ , Schild-PoulterC. Cell signalling pathway regulation by RanBPM: molecular insights and disease implications. Open Biol.7(6), (2017).
   PubMed Web of Science ®Google Scholar
• Liu T , RohSE , WooJAet al. Cooperative role of RanBP9 and P73 in mitochondria-mediated apoptosis. Cell Death Dis.4(1), e476 (2013).
   PubMedGoogle Scholar
• Palmieri D , TessariA , CoppolaV. Scorpins in the DNA damage response. Int. J. Mol. Sci.19(6), (2018).
   Web of Science ®Google Scholar
• Zhao Z , ChengS , ZabkiewiczCet al. Reduced expression of RanBPM is associated with poorer survival from lung cancer and increased proliferation and invasion of lung cancer cells in vitro. Anticancer Res.37(8), 4389–4397 (2017).
   PubMed Web of Science ®Google Scholar
• Shao S , SunPH , SatherleyLKet al. Reduced RanBPM expression is associated with distant metastasis in gastric cancer and chemoresistance. Anticancer Res.36(3), 1295–1303 (2016).
   PubMed Web of Science ®Google Scholar
• Qin C , ZhangQ , WuG. RANBP9 suppresses tumor proliferation in colorectal cancer. Oncol. Lett.17(5), 4409–4416 (2019).
   PubMed Web of Science ®Google Scholar
• Wang D , LiZ , MessingEM , WuG. Activation of Ras/Erk pathway by a novel MET-interacting protein RanBPM. J. Biol. Chem.277(39), 36216–36222 (2002).
   PubMed Web of Science ®Google Scholar
• Zou Y , LimS , LeeKet al. Serine/threonine kinase Mirk/Dyrk1B is an inhibitor of epithelial cell migration and is negatively regulated by the Met adaptor Ran-binding protein M. J. Biol. Chem.278(49), 49573–49581 (2003).
   PubMed Web of Science ®Google Scholar
• Forbes SA , BeareD , GunasekaranPet al. COSMIC: exploring the world’s knowledge of somatic mutations in human cancer. Nucleic Acids Res.43, D805–811 (2015).
   PubMed Web of Science ®Google Scholar
• Tessari A , ParbhooK , PawlikowskiMet al. RANBP9 affects cancer cells response to genotoxic stress and its over expression is associated with worse response to platinum in NSCLC patients. Oncogene37(50), 6463–6476 (2018).
   PubMed Web of Science ®Google Scholar
• Rhodes DR , Kalyana-SundaramS , MahavisnoVet al. Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia9(2), 166–180 (2007).
   PubMed Web of Science ®Google Scholar
• Chandrashekar DS , BashelB , BalasubramanyaSaHet al. UALCAN: a portal for facilitating tumor subgroup gene expression and survival analyses. Neoplasia19(8), 649–658 (2017).
   PubMed Web of Science ®Google Scholar
• Tang Z , LiC , KangBet al. GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses. Nucleic Acids Res.45(W1), W98–w102 (2017).
   PubMed Web of Science ®Google Scholar
• Li T , FanJ , WangBet al. TIMER: a web server for comprehensive analysis of tumor-infiltrating immune cells. Cancer Res.77(21), e108–e110 (2017).
   PubMed Web of Science ®Google Scholar
• Vasaikar SV , StraubP , WangJ , ZhangB. LinkedOmics: analyzing multi-omics data within and across 32 cancer types. Nucleic Acids Res.46(D1), D956–d963 (2018).
   PubMed Web of Science ®Google Scholar
• Gao J , AksoyBA , DogrusozUet al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci. Signal.6(269), pl1 (2013).
   PubMed Web of Science ®Google Scholar
• Franz M , RodriguezH , LopesCet al. GeneMANIA update 2018. Nucleic Acids Res.46(W1), W60–w64 (2018).
   PubMed Web of Science ®Google Scholar
• Fleischer T , TekpliX , MathelierAet al. DNA methylation at enhancers identifies distinct breast cancer lineages. Nat. Commun.8(1), 1379 (2017).
   PubMedGoogle Scholar
• Jovanovic J , RønnebergJA , TostJ , KristensenV. The epigenetics of breast cancer. Mol. Oncol.4(3), 242–254 (2010).
   PubMed Web of Science ®Google Scholar
• Tang Z , ZhuM , ZhongQ. Self-eating to remove cilia roadblock. Autophagy10(2), 379–381 (2014).
   PubMed Web of Science ®Google Scholar
• Park HM , KimH , LeeKH , ChoJY. Analysis of opposing histone modifications H3K4me3 and H3K27me3 reveals candidate diagnostic biomarkers for TNBC and gene set prediction combination. BMB Rep.53(5), 266–271 (2020).
   PubMed Web of Science ®Google Scholar
• Tang S , ZhaoY , HeXet al. Identification of NOVA family proteins as novel β-catenin RNA-binding proteins that promote epithelial-mesenchymal transition. RNA Biol.17(6), 881–891 (2020).
   PubMed Web of Science ®Google Scholar
• Kelemen LE , WangX , FredericksenZSet al. Genetic variation in the chromosome 17q23 amplicon and breast cancer risk. Cancer Epidemiol. Biomarkers Prev.18(6), 1864–1868 (2009).
   PubMed Web of Science ®Google Scholar
• Tuttle R , MillerKR , MaioranoJNet al. Novel senescence associated gene, YPEL3, is repressed by estrogen in ER+ mammary tumor cells and required for tamoxifen-induced cellular senescence. Int. J. Cancer130(10), 2291–2299 (2012).
   PubMed Web of Science ®Google Scholar
• Wittmann S , BaliP , DonapatySet al. Flavopiridol down-regulates antiapoptotic proteins and sensitizes human breast cancer cells to epothilone B-induced apoptosis. Cancer Res.63(1), 93–99 (2003).
   PubMed Web of Science ®Google Scholar
• Shen G , HeP , MaoYet al. Over expression of uridine-cytidine kinase 2 correlates with breast cancer progression and poor prognosis. J. Breast Cancer20(2), 132–141 (2017).
   PubMed Web of Science ®Google Scholar
• Zati Zehni A , JeschkeU , HesterAet al. EP3 is an independent prognostic marker only for unifocal breast cancer cases. Int. J. Mol. Sci.21(12), (2020).
   Web of Science ®Google Scholar
• Goh JY , FengM , WangWet al. Chromosome 1q21.3 amplification is a trackable biomarker and actionable target for breast cancer recurrence. Nat. Med.23(11), 1319–1330 (2017).
   PubMed Web of Science ®Google Scholar
• Wei JD , KimJY , KimAKet al. RanBPM protein acts as a negative regulator of BLT2 receptor to attenuate BLT2-mediated cell motility. J. Biol. Chem.288(37), 26753–26763 (2013).
   PubMed Web of Science ®Google Scholar
• Wei JD , JangJH , KimJH. RanBPM inhibits BLT2-mediated IL-8 production and invasiveness in aggressive breast cancer cells. Biochem. Biophys. Res. Commun.483(1), 305–311 (2017).
   PubMed Web of Science ®Google Scholar
• Wu CY , LauBT , KimHSet al. Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer. Nat. Biotechnol.39(10), 1259–1269 (2021).
   PubMed Web of Science ®Google Scholar
• Vogelstein B , PapadopoulosN , VelculescuVEet al. Cancer genome landscapes. Science339(6127), 1546–1558 (2013).
   PubMed Web of Science ®Google Scholar
• Győrffy B , BottaiG , FleischerTet al. Aberrant DNA methylation impacts gene expression and prognosis in breast cancer subtypes. Int. J. Cancer138(1), 87–97 (2016).
   PubMed Web of Science ®Google Scholar
• Absmaier M , NapieralskiR , SchusterTet al. PITX2 DNA-methylation predicts response to anthracycline-based adjuvant chemotherapy in triple-negative breast cancer patients. Int. J. Oncol.52(3), 755–767 (2018).
   PubMed Web of Science ®Google Scholar
• Hanahan D , WeinbergRA. Hallmarks of cancer: the next generation. Cell144(5), 646–674 (2011).
   PubMed Web of Science ®Google Scholar
• Finn RS , AleshinA , SlamonDJ. Targeting the cyclin-dependent kinases (CDK) 4/6 in estrogen receptor-positive breast cancers. Breast Cancer Res.18(1), 17 (2016).
   PubMed Web of Science ®Google Scholar
• De Nonneville A , FinettiP , BirnbaumDet al. WEE1 dependency and pejorative prognostic value in triple-negative breast cancer. Adv. Sci. (Weinh).8(17), e2101030 (2021).
   PubMedGoogle Scholar
• Freeman-Cook K , HoffmanRL , MillerNet al. Expanding control of the tumor cell cycle with a CDK2/4/6 inhibitor. Cancer Cell39(10), 1404–1421.e1411 (2021).
   PubMed Web of Science ®Google Scholar