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Editorial

The DNA Sequencing Renaissance and its Implications for Epigenomics

Pages 5-8 | Published online: 01 Oct 2009

Bibliography

  • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature431 , 931–945 (2004).
  • Bennett ST , BarnesC, CoxA, DaviesL, BrownC: Toward the US$1000 human genome.Pharmacogenomics6 , 373–382 (2005).
  • Margulies M , EgholmM, AltmanWE et al.: Genome sequencing in microfabricated high-density picolitre reactors.Nature437 , 376–380 (2005).
  • Harris TD , BuzbyPR, BabcockH et al.: Single-molecule DNA sequencing of a viral genome.Science320 , 106–109 (2008).
  • Wheeler DA , SrinivasanM, EgholmM et al.: The complete genome of an individual by massively parallel DNA sequencing.Nature452 , 872–876 (2008).
  • Bentley DR , BalasubramanianS, SwerdlowHP et al.: Accurate whole human genome sequencing using reversible terminator chemistry.Nature456 , 53–59 (2008).
  • Korbel JO , UrbanAE, AffourtitJP et al.: Paired-end mapping reveals extensive structural variation in the human genome. Science318 , 420–426 (2007).
  • House of Lords Science and Technology Committee: Genomic medicine. 2nd Report of Session 2008–2009. The Stationary Office Ltd, Norwich, UK
  • Campbell PJ , StephensPJ, PleasanceED et al.: Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing.Nature Genet.40 , 722–729 (2008).
  • Clarke J , WuHC, JayasingheL, PatelA, ReidS, BayleyH: Continuous base identification for single-molecule nanopore DNA sequencing.Nat Nanotechnol.4 , 265–270 (2009).
  • Sachidanandam R , WeissmanD, SchmidtSC et al.: A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.Nature409 , 928–933 (2001).
  • International Human Genome Sequencing Consortium: A haplotype map of the human genome. Nature.437 , 1299–1320 (2005).
  • Mortazavi A , WilliamsB A, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods5 , 585–587 (2008).
  • Ehrlich M , WangRY: 5-Methylcytosine in eukaryotic DNA.Science212 , 1350–1357 (1981).
  • Kriaucions S , HeintzN: The nuclear DNA base 5-hydroxymethylacytosine is present in purkinje neurons and the brain.Science324(5929) , 929–930 (2009).
  • Beck S , OlekA (Eds). The Epigenome. Wiley-VCH, Weinheim, Germany (2003).
  • Egger G , LiangG, AparicioA et al.: Epigenetics in human disease and prospects for epigenetic therapy.Nature429 , 457–463 (2004).
  • Bernstein B , MeissnerA, LanderE: The mammalian epigenomeCell128(4) , 669–681 (2007).
  • Johnson DS , MortazaviA et al.: Genome-wide mapping of in vivo protein–DNA interactions. Science316 , 1497–1502 (2007).
  • Li H , RuanJ, DurbinR : Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res.18(11) , 1851–1858 (2008).
  • Frommer M , McDonaldLE, MillarDS et al.: A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA89 , 1827–1831 (1992).

▪ Websites

▪ Patent

  • Milton J, Wu X, Smith M et al.: Modified nucleotides. World Intellectual Property Organization WO/2004/018497 (2004).

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