614
Views
0
CrossRef citations to date
0
Altmetric
Editorial

New Concepts of Old Epigenetic Phenomena and Their Implications for Selecting Specific Cell Populations for Epigenomic Research

&
Pages 383-386 | Published online: 18 Aug 2011

Bibliography

  • Kangaspeska S , StrideB, MetivierRet al. Transient cyclical methylation of promoter DNA. Nature 452(7183) , 112–115 (2008).
  • Metivier R , GallaisR, TiffocheCet al. Cyclical DNA methylation of a transcriptionally active promoter. Nature 452(7183) , 45–50 (2008).
  • Suzuki MM , BirdA. DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet.9(6) , 465–476 (2008).
  • Laird PW . Principles and challenges of genomewide DNA methylation analysis. Nat. Rev. Genet.11(3) , 191–203 (2010).
  • Meissner A , MikkelsenTS, GuHet al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454(7205) , 766–770 (2008).
  • Lister R , PelizzolaM, DowenRHet al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462(7271) , 315–322 (2009).
  • Tahiliani M , KohKP, ShenYet al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324(5929) , 930–935 (2009).
  • Kriaucionis S , HeintzN. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science324(5929) , 929–930 (2009).
  • Ito S , D‘AlessioAC, TaranovaOV, HongK, SowersLC, ZhangY. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature466(7310) , 1129–1133 (2010).
  • Irizarry RA , Ladd-AcostaC, WenBet al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat. Genet. 41(2) , 178–186 (2009).
  • Schilling E , El Chartouni C, Rehli M. Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences. Genome Res.19(11) , 2028–2035 (2009).
  • Zhang Y , RohdeC, ReinhardtR, Voelcker-RehageC, JeltschA. Non-imprinted allele-specific DNA methylation on human autosomes. Genome Biol.10(12) , R138 (2009).
  • Laurent L , WongE, LiGet al. Dynamic changes in the human methylome during differentiation. Genome Res. 20(3) , 320–331 (2010).
  • Maunakea AK , NagarajanRP, BilenkyMet al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 466(7303) , 253–257 (2010).
  • Eckhardt F , LewinJ, CorteseRet al. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat. Genet. 38(12) , 1378–1385 (2006).
  • Klug M , HeinzS, GebhardCet al. Active DNA demethylation in human postmitotic cells correlates with activating histone modifications, but not transcription levels. Genome Biol. 11(6) , R63 (2010).
  • Cuddapah S , BarskiA, ZhaoK. Epigenomics of T cell activation, differentiation, and memory. Curr. Opin. Immunol.22(3) , 341–347 (2010).
  • Lee DU , AgarwalS, RaoA. Th2 lineage commitment and efficient IL-4 production involves extended demethylation of the IL-4 gene. Immunity16(5) , 649–660 (2002).
  • White GP , WattPM, HoltBJ, HoltPG. Differential patterns of methylation of the IFN-γ promoter at CpG and non-CpG sites underlie differences in IFN-γ gene expression between human neonatal and adult CD45RO-T cells. J. Immunol.168(6) , 2820–2827 (2002).
  • Hernandez-Vargas H , SincicN, OuzounovaM, HercegZ. Epigenetic signatures in stem cells and cancer stem cells. Epigenomics1(2) , 261–280 (2009).
  • Clevers H . The cancer stem cell: premises, promises and challenges. Nat. Med.17(3) , 313–319 (2011).
  • Lister R , PelizzolaM, KidaYSet al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471(7336) , 68–73 (2011).

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.