References
- Law JA , JacobsenSE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet.11(3) , 204–220 (2010).
- Shenker N , FlanaganJM. Intragenic DNA methylation: implications of this epigenetic mechanism for cancer research. Br. J. Cancer106(2) , 248–253 (2012).
- Dyachenko OV , SchevchukTV, KretznerL, BuryanovYI, SmithSS. Human non-CG methylation: are human stem cells plant-like? Epigenetics5(7) , 569–572 (2010).
- Lister R , PelizzolaM, DowenRH et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462(7271) , 315–322 (2009).
- Laurent L , WongE, LiG et al. Dynamic changes in the human methylome during differentiation. Genome Res. 20(3) , 320–331 (2010).
- Ziller MJ , MüllerF, LiaoJ et al. Genomic distribution and inter-sample variation of non-CpG methylation across human cell types. PLoS Genet. 7(12) , e1002389 (2011).
- Ramsahoye BH , BiniszkiewiczD, LykoF, ClarkV, BirdAP, JaenischR. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc. Natl Acad. Sci. USA97(10) , 5237–5242 (2000).
- Gupta PB , ChafferCL, WeinbergRA. Cancer stem cells: mirage or reality? Nat. Med.15(9) , 1010–1012 (2009).
- Woodcock DM , LinsenmeyerME, DohertyJP, WarrenWD. DNA methylation in the promoter region of the p16 (CDKN2/MTS-1/INK4A) gene in human breast tumours. Br. J. Cancer79(2) , 251–256 (1999).
- Pulverer W , WielscherM, Panzer-GrümayerR et al. The stem cell signature of CHH/CHG methylation is not present in 271 cancer associated 5´UTR gene regions. Biochimie 94(11) , 2345–2352 (2012).
- Malone CS , MinerMD, DoerrJR et al. CmC(A/T)GG DNA methylation in mature B cell lymphoma gene silencing. Proc. Natl Acad. Sci. USA 98(18) , 10404–10409 (2001).
- Haines TR , RodenhiserDI, AinsworthPJ. Allele-specific non-CpG methylation of the Nf1 gene during early mouse development. Dev. Biol.240(2) , 585–598 (2001).
- Yan J , ZierathJR, BarrèsR. Evidence for non-CpG methylation in mammals. Exp. Cell Res.317(18) , 2555–2561 (2011).
- Truong M , YangB, WagnerJ et al. Even-skipped homeobox 1 is frequently hypermethylated in prostate cancer and predicts PSA recurrence. Br. J. Cancer 107(1) , 100–107 (2012).
- Desotelle J , TruongM, EwaldJ et al. CpG island hypermethylation frequently silences FILIP1L isoform 2 expression in prostate cancer. J. Urol. 189(1) , 329–335 (2013).
- Schwarze SR , ShiY, FuVX, WatsonPA, JarrardDF. Role of cyclin-dependent kinase inhibitors in the growth arrest at senescence in human prostate epithelial and uroepithelial cells. Oncogene20(57) , 8184–8192 (2001).
- Bock C , ReitherS, MikeskaT, PaulsenM, WalterJ, LengauerT. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinformatics21(21) , 4067–4068 (2005).
- Lyko F , BrownR. DNA methyltransferase inhibitors and the development of epigenetic cancer therapies. J. Natl Cancer Inst.97(20) , 1498–1506 (2005).
- Burton ER , GaffarA, LeeSJ et al. Downregulation of Filamin A interacting protein 1-like is associated with promoter methylation and induces an invasive phenotype in ovarian cancer. Mol. Cancer Res. 9(8) , 1126–1138 (2011).
- Franchina M , KayPH. Evidence that cytosine residues within 5´-CCTGG-3´ pentanucleotides can be methylated in human DNA independently of the methylating system that modifies 5´-CG-3´ dinucleotides. DNA Cell Biol.19(9) , 521–526 (2000).
- Kouidou S , AgidouT, KyrkouA et al. Non-CpG cytosine methylation of p53 exon 5 in non-small cell lung carcinoma. Lung Cancer 50(3) , 299–307 (2005).
- Nishino K , HattoriN, SatoS et al. Non-CpG methylation occurs in the regulatory region of the Sry gene. J. Reprod. Dev. 57(5) , 586–593 (2011).
- Briata P , Van De Werken R, Airoldi I et al. Transcriptional repression by the human homeobox protein EVX1 in transfected mammalian cells. J. Biol. Chem.270(46) , 27695–27701 (1995).