References
- Schubert T , PuschMC, DiermeierS et al. Protein and snoRNAs maintain accessible higher-order structures of chromatin. Mol. Cell 48 , 434–444 (2012).
- Bernstein BE , StamatoyannopoulosJA, CostelloJF et al. The NIH Roadmap Epigenomics Mapping Consortium. Nat. Biotechnol. 28 , 1045–1048 (2010).
- Mikkelsen TS , XuZ, ZhangX et al. Comparative epigenomic analysis of murine and human adipogenesis. Cell 143 , 156–169 (2010).
- Melnikov A , MuruganA, ZhangX et al. Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay. Nat. Biotechnol. 30 , 271–277 (2012).
- Rodriguez-Cortez VC , HernandoH, de la Rica L, Vento R, Ballestar E. Epigenomic deregulation in the immune system. Epigenomics3 , 697–713 (2011).
- Robertson AB , DahlJA, OuglandR, KlunglandA. Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads. Nat. Protoc.7 , 340–350 (2012).
- Robertson AB , DahlJA, VagboCB, TripathiP, KrokanHE, KlunglandA. A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Res.39 , e55 (2011).
- Rakyan VK , DownTA, BaldingDJ, BeckS. Epigenome-wide association studies for common human diseases. Nat. Rev. Genet.12 , 529–541 (2011).
- Bell JT , SpectorTD. DNA methylation studies using twins: what are they telling us? Genome Biol.13 , 172 (2012).
- Park SY , SchwartzYB, KahnTG, AskerD, PirrottaV. Regulation of polycomb group genes Psc and Su(z)2 in Drosophila melanogaster. Mech. Dev.128 , 536–547 (2012).
- Lafos M , KrollP, HohenstattML, ThorpeFL, ClarenzO, SchubertD. Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation. PLoS Genet.7 , e1002040 (2011).
- Kuchen S , ReschW, YamaneA et al. Regulation of microRNA expression and abundance during lymphopoiesis. Immunity 32 , 828–839 (2010).
- Enderle D , BeiselC, StadlerMB, GerstungM, AthriP, ParoR. Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. Genome Res.21 , 216–226 (2011).
- Hoppmann V , ThorstensenT, KristiansenPE et al. The CW domain, a new histone recognition module in chromatin proteins. EMBO J. 30 , 1939–1952 (2011).
- Dalvai M , BellucciL, FleuryL, LavigneAC, MoutahirF, BystrickyK. H2A.Z-dependent crosstalk between enhancer and promoter regulates Cyclin D1 expression. Oncogene doi:10.1038/onc.2012.442 (2012) (Epub ahead of print).
- Williamson I , EskelandR, LetticeLA et al. Anterior-posterior differences in HoxD chromatin topology in limb development. Development 139 , 3157–3167 (2012).