Defending the Homeland: Microbiome Molecules Provide Protection to Their Vertebrate Hosts

References

• Donaldson GP , LeeSM , MazmanianSK. Gut biogeography of the bacterial microbiota. Nat. Rev. Microbiol.14(1), 20–32 (2016).
   PubMed Web of Science ®Google Scholar
• Shapira M . Gut microbiotas and host evolution: scaling up symbiosis. Trends Ecol. Evol.31(7), 539–549 (2016).
   PubMed Web of Science ®Google Scholar
• Flint HJ , BayerEA , RinconMT , LamedR , WhiteBA. Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol.6(2), 121–131 (2008).
   PubMed Web of Science ®Google Scholar
• Waldram A , HolmesE , WangYet al. Top-down systems biology modeling of host metabotype-microbiome associations inobese rodents. J. Proteome Res.8(5), 2361–2375 (2009).
   PubMed Web of Science ®Google Scholar
• Fierer N , FerrenbergS , FloresGEet al. From animalcules to an ecosystem: application of ecological concepts to the human microbiome. Annu. Rev. Ecol. Evol. Syst.43, 137–155 (2012).
   Web of Science ®Google Scholar
• Gao Z , KangY , YuJ , RenL. Human pharyngeal microbiome may play a protective role in respiratory tract infections. Genomics Proteomics Bioinformatics12(3), 144–150 (2014).
   PubMedGoogle Scholar
• McFall-Ngai MJ . The importance of microbes in animal development: lessons from the squid-vibrio symbiosis. Annu. Rev. Microbiol.68, 177–194 (2014).
   PubMed Web of Science ®Google Scholar
• Chung H , PampSJ , HillJAet al. Gut immune maturation depends on colonization with a host-specific microbiota. Cell149(7), 1578–1593 (2012).
   PubMed Web of Science ®Google Scholar
• Lee YK , MazmanianSK. Has the microbiota played a critical role in the evolution of the adaptive immune system?Science330(6012), 1768–1773 (2010).
   PubMed Web of Science ®Google Scholar
• Hill DA , ArtisD. Intestinal bacteria and the regulation of immune cell homeostasis. Annu. Rev. Immunol.28, 623–667 (2010).
   PubMed Web of Science ®Google Scholar
• Nyholm SV , GrafJ. Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses. Nat. Rev. Microbiol.10(12), 815–827 (2012).
   PubMed Web of Science ®Google Scholar
• Caballero S , PamerEG. Microbiota-mediated inflammation and antimicrobial defense in the intestine. Annu. Rev. Immunol.33, 227–256 (2015).
   PubMed Web of Science ®Google Scholar
• Sekirov I , RussellSL , AntunesLC , FinlayBB. Gut microbiota in health and disease. Physiol. Rev.90(3), 859–904 (2010).
   PubMed Web of Science ®Google Scholar
• Chow J , LeeSM , ShenY , KhosraviA , MazmanianSK. Host–bacterial symbiosis in health and disease. Adv. Immunol.107, 243–274 (2010).
   PubMed Web of Science ®Google Scholar
• Vitetta L , VitettaG , HallS. Immunological tolerance and function: associations between intestinal bacteria, probiotics, prebiotics, and phages. Front. Immunol.9, 2240 (2018).
   PubMed Web of Science ®Google Scholar
• Chen VL , KasperDL. Interactions between the intestinal microbiota and innate lymphoid cells. Gut Microbes5(1), 129–140 (2014).
   PubMed Web of Science ®Google Scholar
• Braun V , PilslH , GrossP. Colicins: structures modes of action, transfer through membranes, and evolution. Arch. Microbiol.161, 199–206 (1994).
   PubMed Web of Science ®Google Scholar
• Konisky J . Colicins and other bacteriocins with established modes of action. Annu. Rev. Microbiol.36, 125–144 (1982)
   PubMed Web of Science ®Google Scholar
• Tagg JR , DajaniAS , WannamakerLW. Bacteriocins of gram-positive bacteria. Bacteriol. Rev.40, 722–756 (1976).
   PubMedGoogle Scholar
• Heatley NG , FloreyHW. An antibiotic from Bacterium coli. Br. J. Exp. Pathol.27(6), 378–390 (1946).
   PubMedGoogle Scholar
• Braude AI , SiemiemskiJS. The influence of bacteriocins on resistance to infection by Gram-negative bacteria. I. The effect of colicin on bactericidal power of blood. J. Clin. Invest.44, 849–859 (1965).
   PubMed Web of Science ®Google Scholar
• Cramer WA , HeymannJB , SchendelSLet al. Structure-function of the channel-forming colicins. Annu. Rev. Biophys. Biomol. Struct.24, 611–641 (1995).
   PubMedGoogle Scholar
• Cascales E , BuchananSK , DuchéDet al. Colicin biology. Microbiol. Mol. Biol. Rev.71(1), 158–229 (2007).
   PubMed Web of Science ®Google Scholar
• Cameron A , ZaheerR , AdatorEH , BarbieriR , ReuterT , McAllisterTA. Bacteriocin occurrence and activity in Escherichia coli isolated from bovines and wastewater. Toxins (Basel)11(8), (2019).
   PubMed Web of Science ®Google Scholar
• Micenková L , ŠtaudováB , BosákJet al. Bacteriocin-encoding genes and ExPEC virulence determinants are associated in human fecal Escherichia coli strains. BMC Microbiol.14, 109 (2014).
   PubMed Web of Science ®Google Scholar
• Qiu XQ , RileyMA (Ed.). Capturing the power of van der waals zone in the creation of a novel family of bacteriocin-based antibiotics. In: The Bacteriocins: Current Knowledge and Future Prospects.DoritR, RoySM, (Eds). 65–80Caister Academic Press, Norfolk, UK, (2016).
   Google Scholar
• Mankovich JA , HsuCH , KoniskyJ. DNA and amino acid sequence analysis of structural and immunity genes of colicins Ia and Ib. J. Bacteriol.168(1), 228–236 (1986).
   PubMed Web of Science ®Google Scholar
• Pugsley AP . The ins and outs of colicins. Part I: production, and translocation across membranes. Microbiol. Sci.1(7), 168–175 (1984).
   PubMedGoogle Scholar
• Qiu XQ , JakesKS , KienkerPK , FinkelsteinA , SlatinSL. Major transmembrane movement associated with colicin Ia channel gating. J. Gen. Physiol.107(3), 313–328 (1996).
   PubMed Web of Science ®Google Scholar
• Kienker PK , QiuXQ , SlatinSL , FinkelsteinA , JakesKS. Transmembrane insertion of the colicin Ia hydrophobic hairpin. J. Membr. Biol.157(1), 27–37 (1997).
   PubMed Web of Science ®Google Scholar
• Qiu XQ , WangH , LuXFet al. An engineered multidomain bactericidal peptide as a model for targeted antibiotics against specific bacteria. Nat. Biotechnol.21(12), 1480–1485 (2003).
   PubMed Web of Science ®Google Scholar
• Qiu XQ , ZhangJ , WangH , WuGY. A novel engineered peptide, a narrow-spectrum antibiotic, is effective against vancomycin-resistant Enterococcus faecalis. Antimicrob. Agents Chemother.49(3), 1184–1189 (2005).
   PubMed Web of Science ®Google Scholar
• Qiu XQ , WangH , CaiB , WangLL , YueST. Small antibody mimetics comprising two complementarity-determining regions and a framework region for tumor targeting. Nat. Biotechnol.25(8), 921–929 (2007).
   PubMed Web of Science ®Google Scholar
• Qiu XQ , TongCY , ZhongZQet al. An engineered multidomain fungicidal peptide against plant fungal pathogens. Sheng Li Xue Bao65(4), 417–432 (2013).
   PubMedGoogle Scholar
• Rinttila T , ApajalahtiJ. Intestinal microbiota and metabolites–Implications for broiler chicken health and performance. J. Appl. Poult. Res.22(3), 647–658 (2013).
   Web of Science ®Google Scholar
• Li RW , ConnorEE , LiC , BaldwinVi RL , SparksME. Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ. Microbiol.14(1), 129–139 (2012).
   PubMed Web of Science ®Google Scholar