Genetic Characterization of G Protein in Respiratory Syncytial Virus ON-1 Genotype in Tehran

References

• Shi T , McAllisterDA, O’BrienKLet al. Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study. Lancet, 390(10098), 946–958 (2017).
   PubMed Web of Science ®Google Scholar
• Slovic A , Ivancic-JeleckiJ, Ljubin-SternakS, GalinovićGM, ForcicD. A molecular epidemiological study of human respiratory syncytial virus in Croatia, 2011–2014. Infect. Genet. Evol., 44, 76–84 (2016).
   PubMed Web of Science ®Google Scholar
• Gaymard A , Bouscambert-DuchampM, PichonMet al. Genetic characterization of respiratory syncytial virus highlights a new BA genotype and emergence of the ON1 genotype in Lyon, France, between 2010 and 2014. J. Clin. Virol., 102, 12–18 (2018).
   PubMed Web of Science ®Google Scholar
• Amarasinghe GK , BàoY, BaslerCFet al. Taxonomy of the order Mononegavirales: update 2017. Arch. Virol., 162(8), 2493–2504 (2017).
   PubMed Web of Science ®Google Scholar
• Collins PL , FearnsR, GrahamBS. Respiratory syncytial virus: virology, reverse genetics, and pathogenesis of disease, in challenges and opportunities for respiratory syncytial virus vaccines. Curr. Top. Microbiol. Immunol., 372, 3–38 (2013).
   PubMed Web of Science ®Google Scholar
• McLellan JS , RayWC, PeeplesME. Structure and function of respiratory syncytial virus surface glycoproteins. Curr. Top. Microbiol. Immunol., 372, 83–104 (2013).
   PubMed Web of Science ®Google Scholar
• Sullender WM . Respiratory syncytial virus genetic and antigenic diversity. Clin. Microbiol. Rev., 13(1), 1–15 (2000).
   PubMed Web of Science ®Google Scholar
• Melero JA , MasV, McLellanJS. Structural, antigenic and immunogenic features of respiratory syncytial virus glycoproteins relevant for vaccine development. Vaccine, 35(3), 461–468 (2017).
   PubMed Web of Science ®Google Scholar
• Agoti CN , OtienoJR, GitahiCW, CanePA, NokesDJ. Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerg. Infect. Dis., 20(6), 950 (2014).
   PubMed Web of Science ®Google Scholar
• Zhang T , QianY, DengJet al. Tracing the emerging genotypes of human respiratory syncytial virus in Beijing by evolution analysis of the attachment glycoprotein (G) gene. Infect. Genet. Evol., 65, 18–27 (2018).
   PubMed Web of Science ®Google Scholar
• Hibino A , SaitoR, TaniguchiKet al. Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1. PLoS ONE, 13(1), e0192085 (2018).
   PubMed Web of Science ®Google Scholar
• Kimura H , NagasawaK2, TsukagoshiHet al. Molecular evolution of the fusion protein gene in human respiratory syncytial virus subgroup A. Infect. Genet. Evol., 43, 398–406 (2016).
   PubMed Web of Science ®Google Scholar
• Malasao R , OkamotoM, ChaimongkolNet al. Molecular characterization of human respiratory syncytial virus in the Philippines, 2012-2013. PLoS ONE, 10(11), e0142192 (2015).
   PubMed Web of Science ®Google Scholar
• Auksornkitti V , KamprasertN, ThongkomplewSet al. Molecular characterization of human respiratory syncytial virus, 2010-2011: identification of genotype ON1 and a new subgroup B genotype in Thailand. Arch. Virol., 159(3), 499–507 (2014).
   PubMed Web of Science ®Google Scholar
• Tsukagoshi H , YokoiH, KobayashiMet al. Genetic analysis of attachment glycoprotein (G) gene in new genotype ON 1 of human respiratory syncytial virus detected in Japan. Microbiol. Immunol., 57(9), 655–659 (2013).
   PubMed Web of Science ®Google Scholar
• Choudhary ML1 , AnandSP, WadhwaBS, ChadhaMS. Genetic variability of human respiratory syncytial virus in Pune, Western India. Infect. Genet. Evol., 20, 369–377 (2013).
   PubMed Web of Science ®Google Scholar
• Valley-Omar Z , MuloiwaR, HuNC, EleyB, HsiaoNY. Novel respiratory syncytial virus subtype ON1 among children, Cape Town, South Africa, 2012. Emerg. Infect. Dis., 19(4), 668 (2013).
   PubMed Web of Science ®Google Scholar
• Balmaks R , RibakovaI, GardovskaD, KazaksA. Molecular epidemiology of human respiratory syncytial virus over three consecutive seasons in Latvia. J. Med. Virol., 86(11), 1971–1982 (2014).
   PubMed Web of Science ®Google Scholar
• Pierangeli A , TrottaD, ScagnolariCet al. Rapid spread of the novel respiratory syncytial virus A ON1 genotype, central Italy, 2011 to 2013. Euro Surveill., 19(26), 20843 (2014).
   PubMedGoogle Scholar
• Trento A1 , GalianoM, VidelaCet al. Major changes in the G protein of human respiratory syncytial virus isolates introduced by a duplication of 60 nucleotides. J. Gen. Virol., 84(11), 3115–3120 (2003).
   PubMedGoogle Scholar
• Salimi V , Tavakoli-YarakiM, YavarianJ, BontL, Mokhtari-AzadT. Prevalence of human respiratory syncytial virus circulating in Iran. J. Infect. Public Health., 9(2), 125–135 (2016).
   PubMed Web of Science ®Google Scholar
• Malekshahi SS , RazaghipourS, SamieipoorYet al. Molecular characterization of the glycoprotein and fusion protein in human respiratory syncytial virus subgroup A: emergence of ON-1 genotype in Iran. Infect. Genet. Evol., 71, 166–178 (2019).
   PubMed Web of Science ®Google Scholar
• van Niekerk S & VenterM. Replacement of previously circulating respiratory syncytial virus (RSV) subtype B strains with the BA genotype in South Africa. J. Virol., 85(17), 8789–8797 (2011).
   PubMed Web of Science ®Google Scholar
• Bin Lu , LiuH1, TaborDEet al. Emergence of new antigenic epitopes in the glycoproteins of human respiratory syncytial virus collected from a US surveillance study, 2015–17. Sci. Rep., 9(1), 3898 (2019).
   PubMed Web of Science ®Google Scholar
• Malekshahi SS , AzadTM, YavarianJ, ShahmahmoodiS, NaseriM, RezaeiF. Molecular detection of respiratory viruses in clinical specimens from children with acute respiratory disease in Iran. Pediatr. Infect. Dis. J., 29(10), 931–933 (2010).
   PubMed Web of Science ®Google Scholar
• Murrell B , WertheimJO, MoolaSet al. Detecting individual sites subject to episodic diversifying selection. PLoS Genet., 8(7), e1002764 (2012).
   PubMed Web of Science ®Google Scholar
• Kosakovsky Pond SL , DWFrost S. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol., 22(5), 1208–22 (2005)
   PubMed Web of Science ®Google Scholar
• Murrell B , MoolaS, MabonaAet al. FUBAR: a fast, unconstrained Bayesian approximation for inferring selection. Mol. Biol. Evol., 30(5), 1196–205 (2013)
   PubMed Web of Science ®Google Scholar
• Tahamtan A , SamieipoorY, NayeriFSet al. Effects of cannabinoid receptor type 2 in respiratory syncytial virus infection in human subjects and mice. Virulence, 9(1), 217–230 (2018).
   PubMed Web of Science ®Google Scholar
• Costa LF , YokosawaJ, ManteseOCet al. Respiratory viruses in children younger than five years old with acute respiratory disease from 2001 to 2004 in Uberlândia, MG, Brazil. Mem. Inst. Oswaldo Cruz., 101(3), 301–306 (2006).
   PubMed Web of Science ®Google Scholar
• Niang MN1 , DiopOM, SarrFDet al. Viral etiology of respiratory infections in children under 5 years old living in tropical rural areas of Senegal: the EVIRA project. J. Med. Virol., 82(5), 866–872 (2010).
   PubMed Web of Science ®Google Scholar
• Eshaghi A1 , DuvvuriVR, LaiRet al. Genetic variability of human respiratory syncytial virus A strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication. PLoS ONE, 7(3), e32807 (2012).
   PubMed Web of Science ®Google Scholar
• Song J , ZhangY, WangHet al. Emergence of ON1 genotype of human respiratory syncytial virus subgroup A in China between 2011 and 2015. Sci. Rep., 7(1), 5501 (2017).
   PubMedGoogle Scholar
• Duvvuri VR , GranadosA, RosenfeldP, BahlJ, EshaghiA, GubbayJB. Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics. Sci. Rep., 5, 14268 (2015).
   PubMed Web of Science ®Google Scholar
• Faghihloo E , RezaieF, SalimiVet al. Molecular epidemiology of human respiratory syncytial virus in Iran. Acta Virol., 55(1), 81–83 (2011).
   PubMed Web of Science ®Google Scholar
• Faghihloo E , SalimiV, RezaeiFet al. Genetic diversity in the G protein gene of human respiratory syncytial virus among Iranian children with acute respiratory symptoms. Iran J. Pediatr., 21(1), 58–64 (2011).
   PubMed Web of Science ®Google Scholar
• Faghihloo E , YavarianJ, JandaghiNZ, ShadabA, AzadTM. Genotype circulation pattern of human respiratory syncytial virus in Iran. Infect. Genet. Evol., 22, 130–133 (2014).
   PubMed Web of Science ®Google Scholar
• Trento A , CasasI, CalderónAet al. Ten years of global evolution of the human respiratory syncytial virus BA genotype with a 60-nucleotide duplication in the G protein gene. J. Virol., 84(15), 7500–7512 (2010).
   PubMed Web of Science ®Google Scholar
• Pretorius MA , van NiekerkS, TempiaSet al. Replacement and positive evolution of subtype A and B respiratory syncytial virus G-protein genotypes from 1997–2012 in South Africa. J. Infect. Dis., 208(Suppl. 3), S227–S237 (2013).
   PubMedGoogle Scholar
• Melero JA , MooreML. Influence of respiratory syncytial virus strain differences on pathogenesis and immunity, in challenges and opportunities for respiratory syncytial virus vaccines. Curr. Top. Microbiol. Immunol., 372, 59–82 (2013).
   PubMed Web of Science ®Google Scholar
• Schobel SA , StuckerKM, MooreMLet al. Respiratory syncytial virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene. Sci. Rep., 6, 26311 (2016).
   PubMed Web of Science ®Google Scholar
• Hotard AL , LaikhterE, BrooksK, HartertTV, MooreML. Functional analysis of the 60 nucleotide duplication in the respiratory syncytial virus Buenos Aires strain attachment glycoprotein. J. Virol., 89(16), 8258–8266 (2015).
   PubMed Web of Science ®Google Scholar
• Johnson PR , SpriggsMK, OlmstedRA, CollinsPL. The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: extensive sequence divergence between antigenically related proteins. Proc. Natl Acad. Sci. USA, 84, 5625–5629 (1987)
   PubMed Web of Science ®Google Scholar
• Esposito S , PirallaA, ZampieroAet al. Characteristics and their clinical relevance of respiratory syncytial virus types and genotypes circulating in Northern Italy in five consecutive winter seasons. PLoS ONE, 10(6), e0129369 (2015).
   PubMed Web of Science ®Google Scholar
• Kim YJ , KimDW, LeeWJet al. Rapid replacement of human respiratory syncytial virus A with the ON1 genotype having 72 nucleotide duplication in G gene. Infect. Genet. Evol., 26, 103–112 (2014).
   PubMed Web of Science ®Google Scholar
• Botosso VF , ZanottoPM, UedaMet al. Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus. PLoS Pathog., 5(1), e1000254 (2009).
   PubMed Web of Science ®Google Scholar
• Rueda P1 , DelgadoT, PortelaA, MeleroJA, García-BarrenoB. Premature stop codons in the G glycoprotein of human respiratory syncytial viruses resistant to neutralization by monoclonal antibodies. J. Virol., 65(6), 3374–3378 (1991).
   PubMed Web of Science ®Google Scholar