Lineages and Sublineages of Human Papillomavirus Type 16 in Cervical Samples of Iranian Women

References

• GLOBOCAN . Estimated Cancer Incidence, Mortality and Prevalence Worldwide in 2020 (2020).
   Google Scholar
• Xu H-H , ZhengL-Z , LinA-F. Human papillomavirus (HPV) 18 genetic variants and cervical cancer risk in Taizhou area, China. Gene647, 192–197 (2018).
   PubMed Web of Science ®Google Scholar
• Shepherd JH . Cervical cancer. Best practice & research Clinical obstetrics & gynaecology.26(3), 293–309 (2012).
   PubMed Web of Science ®Google Scholar
• Eftekhar NS , KarbalaieNiya MH , YazdaniFet al. Genotype distribution of Human Papillomavirus (HPV) in patients with Recurrent Respiratory Papillomatosis (RRP) in Iran. Respir. Med.132, 270 (2017).
   Web of Science ®Google Scholar
• Karbalaie Niya MH , TameshkelFS , PanahiMet al. Human Papillomavirus Investigation in Head and Neck Squamous Cell Carcinoma: Initial Report from the Low Risk HPV Types Associations. Asian Pacific journal of cancer prevention.18(9), 2573 (2017).
   PubMedGoogle Scholar
• Doorbar J , QuintW , BanksLet al. The biology and life-cycle of human papillomaviruses. Vaccine30, F55–F70 (2012).
   PubMed Web of Science ®Google Scholar
• Nguyen HP , Ramírez-FortMK , RadyPL. The biology of human papillomaviruses. Human Papillomavirus.45, 19–32 (2014).
   Google Scholar
• Guan P , Howell-JonesR , LiNet al. Human papillomavirus types in 115,789 HPV-positive women: a meta-analysis from cervical infection to cancer. Int. J. Cancer131(10), 2349–2359 (2012).
   PubMed Web of Science ®Google Scholar
• Jalilvand S , ShojaZ , HamkarR. Human papillomavirus burden in different cancers in Iran: a systematic assessment. Asian Pac J Cancer Prev.15(17), 7029–7035 (2014).
   PubMedGoogle Scholar
• Lambie M , BratmanSV. Fundamental Biology of Human Papillomaviruses. Recurrent Respiratory PapillomatosisSpringer, Cham (2018).1–17
   Google Scholar
• Berman TA , SchillerJT. Human papillomavirus in cervical cancer and oropharyngeal cancer: one cause, two diseases. Cancer123(12), 2219–2229 (2017).
   PubMed Web of Science ®Google Scholar
• Gheit T , CornetI , CliffordGMet al. Risks for persistence and progression by human papillomavirus type 16 variant lineages among a population-based sample of Danish women. Cancer Epidemiology and Prevention Biomarkers.20(7), 1315–1321 (2011).
   PubMed Web of Science ®Google Scholar
• Maucort-Boulch D , PlummerM , CastlePEet al. Predictors of human papillomavirus persistence among women with equivocal or mildly abnormal cytology. Int. J. Cancer126(3), 684–691 (2010).
   PubMed Web of Science ®Google Scholar
• Chen Z , SchiffmanM , HerreroRet al. Classification and evolution of human papillomavirus genome variants: alpha-5 (HPV26, 51, 69, 82), Alpha-6 (HPV30, 53, 56, 66), Alpha-11 (HPV34, 73), Alpha-13 (HPV54) and Alpha-3 (HPV61). Virology516, 86–101 (2018).
   PubMed Web of Science ®Google Scholar
• Burk RD , HarariA , ChenZ. Human papillomavirus genome variants. Virology445(1–2), 232–243 (2013).
   PubMed Web of Science ®Google Scholar
• Yamada T , WheelerCM , HalpernALet al. Human papillomavirus type 16 variant lineages in United States populations characterized by nucleotide sequence analysis of the E6, L2, and L1 coding segments. J. Virol.69(12), 7743–7753 (1995).
   PubMed Web of Science ®Google Scholar
• Yamada T , ManosMM , PetoJet al. Human papillomavirus type 16 sequence variation in cervical cancers: a worldwide perspective. J. Virol.71(3), 2463–2472 (1997).
   PubMed Web of Science ®Google Scholar
• Huertas-Salgado A , Martín-GámezDC , MorenoPet al. E6 molecular variants of human papillomavirus (HPV) type 16: an updated and unified criterion for clustering and nomenclature. Virology410(1), 201–215 (2011).
   PubMed Web of Science ®Google Scholar
• Clifford GM , TenetV , GeorgesDet al. Human papillomavirus 16 sub-lineage dispersal and cervical cancer risk worldwide: whole viral genome sequences from 7116 HPV16-positive women. Papillomavirus Res.7, 67–74 (2019).
   PubMed Web of Science ®Google Scholar
• von Knebel Doeberitz M . HPV 16 and its variants: minor genome variations make a big difference. J. Natl Cancer Inst.108(9), djw123 (2016).
   PubMedGoogle Scholar
• Kumar A , HussainS , YadavISet al. Identification of human papillomavirus-16 E6 variation in cervical cancer and their impact on T and B cell epitopes. J. Virol. Methods218, 51–58 (2015).
   PubMed Web of Science ®Google Scholar
• Mandal P , BhattacharjeeB , SenSet al. Complete genome sequences of eight human papillomavirus type 16 Asian American and European variant isolates from cervical biopsies and lesions in Indian women. Genome announcements.4(3), e00243–16 (2016).
   PubMedGoogle Scholar
• Nicolás-Párraga S , AlemanyL , de SanjoseSet al. Differential HPV16 variant distribution in squamous cell carcinoma, adenocarcinoma and adenosquamous cell carcinoma. Int. J. Cancer140(9), 2092–2100 (2017).
   PubMed Web of Science ®Google Scholar
• Khorasanizadeh F , HassanlooJ , KhaksarNet al. Epidemiology of cervical cancer and human papilloma virus infection among Iranian women – analyses of national data and systematic review of the literature. Gynecol. Oncol.128(2), 277–281 (2013).
   PubMed Web of Science ®Google Scholar
• Jalilvand S , ShojaZ , NourijelyaniKet al. Meta-analysis of type-specific human papillomavirus prevalence in Iranian women with normal cytology, precancerous cervical lesions and invasive cervical cancer: implications for screening and vaccination. J. Med. Virol.87(2), 287–295 (2015).
   PubMed Web of Science ®Google Scholar
• Vaezi T , ShojaZ , HamkarRet al. Human papillomavirus type 16 lineage analysis based on E6 region in cervical samples of Iranian women. Infect Genet Evol.55, 26–30 (2017).
   PubMed Web of Science ®Google Scholar
• Mobini Kesheh M , BarazandehM , KaffashiAet al. Genetic Diversity of HPV 16 and HPV 18 Based on Partial Long Control Region in Iranian Women. Canadian Journal of Infectious Diseases and Medical Microbiology.2022, 4759871 (2022).
   PubMed Web of Science ®Google Scholar
• Poljak M , KocjanBJ. Commercially available assays for multiplex detection of alpha human papillomaviruses. Expert review of anti-infective therapy.8(10), 1139–1162 (2010).
   PubMed Web of Science ®Google Scholar
• Shang Q , WangY , FangYet al. Human papillomavirus type 16 variant analysis of E6, E7, and L1 [corrected] genes and long control region in [corrected] cervical carcinomas in patients in northeast China. J. Clin. Microbiol.49(7), 2656–2663 (2011).
   PubMed Web of Science ®Google Scholar
• Bhattacharjee B , MandalNR , RoySet al. Characterization of sequence variations within HPV16 isolates among Indian women: prediction of causal role of rare non-synonymous variations within intact isolates in cervical cancer pathogenesis. Virology377(1), 143–150 (2008).
   PubMed Web of Science ®Google Scholar
• Mobini Kesheh M , BarazandehM , KaffashiAet al. Genetic diversity of HPV 16 and HPV 18 based on partial long control region in Iranian women. Can J Infect Dis Med Microbiol.2022, 4759871 (2022).
   PubMed Web of Science ®Google Scholar
• Cornet I , GheitT , IannaconeMRet al. HPV16 genetic variation and the development of cervical cancer worldwide. Br. J. Cancer108(1), 240 (2013).
   PubMed Web of Science ®Google Scholar
• Cornet I , GheitT , FranceschiSet al. Human papillomavirus type 16 genetic variants: phylogeny and classification based on E6 and LCR. J. Virol.86(12), 6855–6861 (2012).
   PubMed Web of Science ®Google Scholar
• Xi LF , KiviatNB , HildesheimAet al. Human papillomavirus type 16 and 18 variants: race-related distribution and persistence. J. Natl Cancer Inst.98(15), 1045–1052 (2006).
   PubMedGoogle Scholar
• Matsumoto K , YoshikawaH , NakagawaSet al. Enhanced oncogenicity of human papillomavirus type 16 (HPV16) variants in Japanese population. Cancer Lett.156(2), 159–165 (2000).
   PubMed Web of Science ®Google Scholar
• Berumen J , OrdonezRM , LazcanoEet al. Asian-American variants of human papillomavirus 16 and risk for cervical cancer: a case-control study. J. Natl Cancer Inst.93(17), 1325–1330 (2001).
   PubMedGoogle Scholar
• Lizano M , Dela Cruz-Hernández E , Carrillo-GarcíaAet al. Distribution of HPV16 and 18 intratypic variants in normal cytology, intraepithelial lesions, and cervical cancer in a Mexican population. Gynecol. Oncol.102(2), 230–235 (2006).
   PubMed Web of Science ®Google Scholar
• Tornesello ML , DuraturoML , SalatielloIet al. Analysis of human papillomavirus type-16 variants in Italian women with cervical intraepithelial neoplasia and cervical cancer. J. Med. Virol.74(1), 117–126 (2004).
   PubMed Web of Science ®Google Scholar
• Freitas LB , ChenZ , MuquiEFet al. Human papillomavirus 16 non-European variants are preferentially associated with high-grade cervical lesions. PLOS ONE.9(7), e100746 (2014).
   PubMed Web of Science ®Google Scholar
• Hildesheim A , SchiffmanM , BromleyCet al. Human papillomavirus type 16 variants and risk of cervical cancer. J NatlCancer Inst.93(4), 315–318 (2001).
   PubMed Web of Science ®Google Scholar
• Schiffman M , RodriguezAC , ChenZet al. A population-based prospective study of carcinogenic human papillomavirus variant lineages, viral persistence, and cervical neoplasia. Cancer Res.70(8), 3159–3169 (2010).
   PubMed Web of Science ®Google Scholar
• Sichero L , FerreiraS , TrottierHet al. High grade cervical lesions are caused preferentially by non-European variants of HPVs 16 and 18. Int. J. Cancer120(8), 1763–1768 (2007).
   PubMed Web of Science ®Google Scholar
• Zuna RE , MooreWE , ShanesmithRPet al. Association of HPV16 E6 variants with diagnostic severity in cervical cytology samples of 354 women in a US population. Int. J. Cancer125(11), 2609–2613 (2009).
   PubMed Web of Science ®Google Scholar
• Zhang E-Y , TangX-D. Human papillomavirus type 16/18 oncoproteins: potential therapeutic targets in non-smoking associated lung cancer. Asian Pacific Journal of Cancer Prevention.13(11), 5363–5369 (2012).
   PubMedGoogle Scholar
• Pol SBV , KlingelhutzAJ. Papillomavirus E6 oncoproteins. Virology445(1–2), 115–137 (2013).
   PubMed Web of Science ®Google Scholar
• Gokhale PS , SonawaniA , Idicula-ThomasSet al. HPV16 E6 variants: frequency, association with HPV types and in silico analysis of the identified novel variants. J. Med. Virol.86(6), 968–974 (2014).
   PubMed Web of Science ®Google Scholar
• Pillai M , HariharanR , BabuJMet al. Molecular variants of HPV-16 associated with cervical cancer in Indian population. Int. J. Cancer125(1), 91–103 (2009).
   PubMed Web of Science ®Google Scholar
• Zehbe I , RichardC , DeCarloCAet al. Human papillomavirus 16 E6 variants differ in their dysregulation of human keratinocyte differentiation and apoptosis. Virology383(1), 69–77 (2009).
   PubMed Web of Science ®Google Scholar
• Pimenoff VN , de OliveiraCM , BravoIG. Transmission between archaic and modern human ancestors during the evolution of the oncogenic human papillomavirus 16. Mol. Biol. Evol.34(1), 4–19 (2017).
   PubMed Web of Science ®Google Scholar