Allozyme and mtDNA variation of white seabream Diplodus sargus populations in a transition area between western and eastern Mediterranean basins (Siculo-Tunisian Strait)

References

• Allegrucci , G , Fortunato , C and Sbordoni , V . 1997 . Genetic structure and allozyme variation of seabass (Dicentrarchus labrax and Dicentrarchus punctatus) in the Mediterranean Sea . Marine Biology , 128 : 347 – 358 .
   Web of Science ®Google Scholar
• Antao , T , Lopes , A , Lopes , R J , Beja-Pereira , A and Luikart , G . 2008 . LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method . BMC Bioinformatics , 9 : 323
   PubMed Web of Science ®Google Scholar
• Arculeo , M , Lo Brutto , S , Sirna-Terranova , M , Maggio , T , Cannizzaro , L and Parrinello , N . 2003 . The stock genetic structure of two Sparidae species, Diplodus vulgaris and Lithognathus mormyrus, in the Mediterranean Sea . Fisheries Research , 63 : 339 – 347 .
   Web of Science ®Google Scholar
• Astraldi , M , Balopoulos , S , Candela , J , Font , J , Gacic , M , Gasparini , G P , Manca , B , Theocharis , A and Tintoré , J . 1999 . The role of straits and channels in understanding the characteristics of Mediterranean circulation . Progress in Oceanography , 44 : 65 – 108 .
   Web of Science ®Google Scholar
• Avise , JC. 2005 . Molecular markers, natural history and evolution , (2nd edn) , Sunderland, Massachusetts : Sinauer Associates .
   Google Scholar
• Bahri-Sfar , L , Lemaire , C , Ben Hassine , O K and Bonhomme , F . 2000 . “ Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism ” . In Proceedings of the Royal Society of London B Vol. 267 , 929 – 935 .
   Google Scholar
• Bargelloni , L , Alarcon , J A , Alvarez , M C , Penzo , E , Magoulas , A , Palma , J and Patarnello , T . 2005 . The Atlantic–Mediterranean transition: discordant genetic patterns in two seabream species, Diplodus puntazzo (Cetti) and Diplodus sargus (L.) . Molecular Phylogenetics and Evolution , 36 : 523 – 535 .
   PubMed Web of Science ®Google Scholar
• Bargelloni , L , Alarcon , J A , Alvarez , M C , Penzo , E , Magoulas , A , Reis , C and Patarnello , T . 2003 . Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic–Mediterranean divide . Journal of Evolutionary Biology , 16 : 1149 – 1158 .
   PubMed Web of Science ®Google Scholar
• Bauchot , M L and Hureau , J C . 1986 . “ Sparidae ” . In Fishes of the north-eastern Atlantic and the Mediterranean , Edited by: Whitehead , P JP , Bauchot , M L , Hureau , J C , Nielsen , J and Tortonese , E . 883 – 907 . Paris : Unesco .
   Google Scholar
• Beaumont , M A and Nichols , R A . 1996 . “ Evaluating loci for use in the genetic analysis of population structure ” . In Proceedings of the Royal Society of London B Vol. 263 , 1619 – 1626 .
   Google Scholar
• Belkhir , K , Borsa , P , Goudet , J , Chikhi , L and Bonhomme , F . 2004 . GENETIX V4.05 software sous Windows (TM) pour la génétique des populations. Laboratoire Génome et Populations. Université Montpellier II [Available at http://www.univ-montp2.fr/~genetix/genetix/intro.htm.]
   Google Scholar
• Béranger , K , Mortier , L , Gasparini , G P , Gervasio , L , Astraldi , M and Crépon , M . 2004 . The dynamics of the Sicily Strait: a comprehensive study from observations and models . Deep-Sea Research II , 51 : 411 – 440 .
   Web of Science ®Google Scholar
• Borsa , P , Naciri , M , Bahri , L , Chikhi , L , Garcia De Leon , F J , Kotoulas , G and Bonhomme , F . 1997 . Intraspecific zoogeography of the Mediterranean: population genetic analysis on sixteen Atlanto-Mediterranean species (fish and invertebrates) . Vie et Milieu , 47 : 295 – 305 .
   Google Scholar
• Clement , M , Posada , D and Crandall , K A . 2000 . TCS: a computer program to estimate genegenealogies . Molecular Ecology , 9 : 1657 – 1659 .
   PubMed Web of Science ®Google Scholar
• Domingues , V S , Santos , R S , Brito , A , Almada , V C , Alexandrou , M and Almada , V C . 2007 . Mitochondrial and nuclear markers reveal isolation by distance and effects of Pleistocene glaciations in the northeastern Atlantic and Mediterranean populations of the white seabream (Diplodus sargus, L.) . Journal of Experimental Marine Biology and Ecology , 346 : 102 – 113 .
   Web of Science ®Google Scholar
• Excoffier , L. 2004 . Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model . Molecular Ecology , 13 : 853 – 864 .
   PubMed Web of Science ®Google Scholar
• Fassatoui , C , Mdelgi , E and Romdhane , M S . 2009 . A preliminary investigation of allozyme genetic variation and population structure in common pandora (Pagellus erythrinus, Sparidae) from Tunisian and Libyan coasts . Ichthyological Research , 56 : 301 – 307 .
   Web of Science ®Google Scholar
• Fauvelot , C and Planes , S . 2002 . Understanding origins of present-day genetic structure in marine fish: biologically or historically driven patterns? . Marine Biology , 141 : 773 – 788 .
   Web of Science ®Google Scholar
• Felsenstein , J. 1995 . Phylogeny inference package, Version 3.57c , Seattle, Washington : University of Washington .
   Google Scholar
• Fischer , W , Bauchot , M L and Schneider , M . 1987 . Fiches FAO d’identification des espèces pour les besoins de la pêche. Méditerranée et Mer Noir. Zone de pêche 37 , Rome : Food and Agricultural Organization .
   Google Scholar
• Fu , YX. 1997 . Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection . Genetics Society of America , 147 : 915 – 925 .
   Google Scholar
• Garcia De Leon , F J , Dallas , J F , Chatain , B , Canonne , M , Versini , J J and Bonhomme , F . 1995 . Development and use of microsatellite markers in seabass, Dicentrarchus labrax (Linneaus, 1758) (Perciforms: Serranidae) . Molecular Marine Biology and Biotechnology , 4 : 62 – 68 .
   PubMedGoogle Scholar
• Gonzalez , E and Zardoya , R . 2007 . Relative role of life-history traits and historical factors in shaping genetic population structure of sardines (Sardina pilchardus) . BMC Evolutionary Biology , 7 : 197
   PubMed Web of Science ®Google Scholar
• González-Wangüemert , M , Cànovas , F , Marcos , C and Pérez-Ruzafa , Á . 2009 . Phosphoglucose isomerase variability of Cerastoderma glaucum as a model for testing the influence of environmental conditions and dispersal patterns through quantitative ecology approaches . Biochemical Systematics and Ecology , 37 : 325 – 333 .
   Web of Science ®Google Scholar
• González-Wangüemert , M , Cánovas , F , Pérez-Ruzafa , Á , Marcos , C and Alexandrino , P . 2010 . Connectivity patterns inferred from the genetic structure of white seabream (Diplodus sargus L.) . Journal of Experimental Marine Biology and Ecology , 383 : 23 – 31 .
   Web of Science ®Google Scholar
• González-Wangüemert , M , Froufe , E , Pérez-Ruzafa , Á and Alexandrino , P . 2011 . Phylogeographical history of the white seabream Diplodus sargus (Sparidae): implications for insularity . Marine Biology Research , 7 : 250 – 260 .
   Web of Science ®Google Scholar
• González-Wangüemert , M , Pérez-Ruzafa , Á , Cánovas , F , García-Charton , J A and Marcos , C . 2007 . Temporal genetic variation in populations of Diplodus sargus from the SW Mediterranean Sea . Marine Ecology Progress Series , 334 : 237 – 244 .
   Web of Science ®Google Scholar
• González-Wangüemert , M , Pérez-Ruzafa , Á , García-Charton , J A and Marcos , C . 2006 . Genetic differentiation and gene flow of two sparidae subspecies, Diplodus sargus sargus and Diplodus sargus cadenati, in Atlantic and south-west Mediterranean populations . Biological Journal of the Linnean Society , 89 : 705 – 717 .
   Web of Science ®Google Scholar
• González-Wangüemert , M , Pérez-Ruzafa , Á , Marcos , C and García-Charton , J A . 2004 . Genetic differentiation of Diplodus sargus (Pisces: Sparidae) populations in the south-west Mediterranean . Biological Journal of the Linnean Society , 82 : 249 – 261 .
   Web of Science ®Google Scholar
• Gysels , E S , Leentjes , V and Volckaert , F AM . 2004 . Small-scale clinal variation, genetic diversity and environmental heterogeneity in the marine gobies Pomatoschistus minutus and P. lozanoi (Gobiidae, Teleostei) . Heredity , 93 : 208 – 214 .
   PubMed Web of Science ®Google Scholar
• Hall , TA. 1999 . BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT . Nucleic Acids Symposium , 41 : 95 – 98 .
   Google Scholar
• Hammami , I , Bahri-Sfar , L , Kaouèche , M and Ben Hassine , O K . 2007 . Genetic characterization of striped sea bream (Lithognathus mormyrus) populations on both sides of a boundary area between eastern and western Mediterranean basins . Cybium , 31 : 143 – 147 .
   Web of Science ®Google Scholar
• Hauser , L and Ward , R D . 1998 . “ Population identification in pelagic fish: the limits of molecular markers ” . In Advances in molecular ecology , Edited by: Carvalho , G . 191 – 224 . Amsterdam : IOS Press .
   Google Scholar
• Hudson , RR. 1991 . Gene genealogies and the coalescent process . Evolutionary Biology , 7 : 1 – 44 .
   Google Scholar
• Johnson , M S and Black , R . 1982 . Chaotic genetic patchiness in an intertidal limpet, Siphonaria sp . Marine Biology , 70 : 157 – 164 .
   Web of Science ®Google Scholar
• Johnson , M S and Black , R . 1984 . Pattern beneath the chaos: the effect of recruitment on genetic patchiness in an intertidal limpet . Evolution , 38 : 1371 – 1383 .
   PubMed Web of Science ®Google Scholar
• Johnson , M S , Holborn , K and Black , R . 1993 . Fine-scale patchiness and genetic heterogeneity of recruits of the corallivorous gastropod Drupella cornus . Marine Biology , 117 : 91 – 96 .
   Web of Science ®Google Scholar
• Jousson , O , Bartoli , P and Pawlowski , J . 2000 . Cryptic speciation among intestinal parasites (Trematoda: Digenea) infecting sympatric host fishes (Sparidae) . Journal of Evolutionary Biology , 13 : 778 – 785 .
   Web of Science ®Google Scholar
• Jukes , T H and Cantor , C R . 1969 . “ Evolution of protein molecules ” . In Mammalian protein metabolism , Edited by: Munro , H N . 21 – 132 . New York : Academic Press .
   Google Scholar
• Kimura , M. 1980 . A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences . Journal of Evolutionary Biology , 16 : 111 – 120 .
   Google Scholar
• Kotoulas , G , Bonhomme , F and Borsa , P . 1995 . Genetic structure of the common sole, Solea vulgaris, at different geographic scales . Marine Biology , 122 : 361 – 375 .
   Web of Science ®Google Scholar
• Lambeck , K , Esat , T M and Potter , E K . 2002 . Links between climate and sea levels for the past three million years . Nature , 419 : 199 – 206 .
   PubMed Web of Science ®Google Scholar
• Larson , R J and Julia , R M . 1999 . Spatial and temporal genetic patchiness in marine populations and their implications for fisheries management . CalCOFl Report , 40 : 94 – 99 .
   Google Scholar
• Leboulleux , V. 1992 . Recrutement benthique de six espèces de sparidés sur les côtes provençales. Mémoire de DAA, Ecole Nationale Supérieure Agronomique de Rennes, France
   Google Scholar
• Lemaire , C , Allegrucci , G , Naciri , M , Bahri-sfar , L , Kara , H and Bonhomme , F . 2000 . Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax) . Molecular Ecology , 9 : 457 – 467 .
   PubMed Web of Science ®Google Scholar
• Lemaire , C , Versini , J J and Bonhomme , F . 2005 . Maintenance of genetic differentiation across a transition zone in the sea: discordance between nuclear and cytoplasmic markers . Journal of Evolutionary Biology , 18 : 70 – 80 .
   PubMed Web of Science ®Google Scholar
• Lenfant , P. 1998 . Influence des paramètres démographiques sur la différentiation génétique intra- et inter-populations: le cas du poisson marin, Diplodus sargus (Linné, 1758). PhD thesis, Université Pierre et Marie Curie et de l’Ecole Pratique des Hautes Etudes, France
   Google Scholar
• Lenfant , P and Planes , S . 1996 . Genetic differentiation of white seabream within the Lion's Gulf and the Ligurian Sea (Mediterranean Sea) . Journal of Fish Biology , 49 : 613 – 621 .
   Web of Science ®Google Scholar
• Lenfant , P and Planes , S . 2002 . Temporal genetic changes between cohorts in a natural population of a marine fish, Diplodus sargus . Biological Journal of the Linnean Society , 76 : 9 – 20 .
   Web of Science ®Google Scholar
• Lloret , J and Planes , S . 2003 . Condition, feeding and reproductive potential of white seabream Diplodus sargus as indicators of habitat quality and the effect of reserve protection in the northwestern Mediterranean . Marine Ecology Progress Series , 248 : 197 – 208 .
   Web of Science ®Google Scholar
• Lo Brutto , S , Arculeo , M , Mauro , A M , Scalisi , M , Cammarata , M and Parrinello , N . 1998 . Allozymic variation in Mediterranean hake Merluccius merluccius (Gadidae) . Italian Journal of Zoology , 65 : 48 – 52 .
   Google Scholar
• Lo Brutto , S , Arculeo , M and Parrinello , N . 2004 . Congruence in genetic markers used to describe Mediterranean and Atlantic population of European hake (Merluccius merluccius L. 1758) . Journal of Applied Ichthyology , 20 : 81 – 86 .
   Web of Science ®Google Scholar
• Lundy , C J , Moran , P , Rico , C , Milner , R S and Hewitt , G M . 1999 . Macrogeographical population differentiation in oceanic environments: a case study of European hake (Merluccius merluccius), a commercially important fish . Molecular Ecology , 8 : 1889 – 1898 .
   PubMed Web of Science ®Google Scholar
• Mejri , R , Lo Brutto , S , Ben Hassine , O K and Arculeo , M . 2009 . A study on Pomatoschistus tortonesei Miller 1968 (Perciformes, Gobiidae) reveals the Siculo-Tunisian Strait (STS) as a breakpoint to gene flow in the Mediterranean basin . Molecular Phylogenetics and Evolution , 53 : 596 – 601 .
   PubMed Web of Science ®Google Scholar
• Mork , J and Sundnes , G . 1985 . O-group cod (Gadus morhua) in captivity: differential survival of certain genotypes . Helgoländer Meeresuntersuchungen , 39 : 63 – 70 .
   Google Scholar
• Nei , M and Chesser , R K . 1983 . Estimation of fixation indices and gene diversities . Annals of Human Genetics , 47 : 253 – 259 .
   PubMed Web of Science ®Google Scholar
• Nei , M and Kumar , S . 2000 . Molecular evolution and phylogenetics , New York : Oxford University Press .
   Google Scholar
• Pasteur , N , Pasteur , G , Bonhomme , F , Catalan , J and Britton-Davidian , J . 1987 . Manuel technique de génétique par électrophorèse des protéines , Paris : Lavoisier .
   Google Scholar
• Patarnello , T , Volckaert , F AMJ and Castilho , R . 2007 . Pillars of Hercules: is the Atlantic–Mediterranean transition a phylogeographical break? . Molecular Ecology , 16 : 4426 – 4444 .
   PubMed Web of Science ®Google Scholar
• Pérez-Losada , M , Guerra , A and San Juan , A . 1999 . Allozyme differentiation in the cuttlefish Sepia officinalis (Mollusca: Cephalopoda) from the NE Atlantic and Mediterranean . Heredity , 83 : 280 – 289 .
   PubMed Web of Science ®Google Scholar
• Pérez-Losada , P M , Nolte , M J , Crandall , K A and Show , P W . 2007 . Testing hypotheses of population structuring in the northeast Atlantic ocean and Mediterranean sea using the common cuttlefish Sepia officinalis . Molecular Ecology , 16 : 2667 – 2679 .
   PubMed Web of Science ®Google Scholar
• Pérez-Ruzafa , Á , González-Wangümert , M , Lenfant , P , Marcos , C and García-Charton , J A . 2006 . Effects of fishing protection on the genetic structure of fish populations . Biological Conservation , 129 : 244 – 255 .
   Web of Science ®Google Scholar
• Planes , S and Lenfant , P . 2002 . Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus, induced by a large variance in individual reproductive success . Molecular Ecology , 11 : 1515 – 1524 .
   PubMed Web of Science ®Google Scholar
• Planes , S and Romans , P . 2004 . Evidence of genetic selection for growth in new recruits of a marine fish . Molecular Ecology , 13 : 2049 – 2060 .
   PubMed Web of Science ®Google Scholar
• Posada , D and Crandall , K A . 2001 . Selecting the best-fit model of nucleotide substitution . Systematic Biology , 50 : 580 – 601 .
   PubMed Web of Science ®Google Scholar
• Quignard , JP. 1978 . La Mediterranee, creuset ichthyologique . Bolletin Zoologica , 45 (Suppl. II) : 23 – 36 .
   Google Scholar
• Reynolds , J , Weir , B S and Cockerham , C C . 1983 . Estimation of the coancestry coefficient: basis for a short-term genetic distance . Genetics , 105 : 767 – 779 .
   PubMed Web of Science ®Google Scholar
• Rogers , A R and Harpending , H . 1992 . Population growth makes waves in the distribution of pairwise genetic differences . Molecular Biology and Evolution , 9 : 552 – 569 .
   PubMed Web of Science ®Google Scholar
• Rozas , J , Sánchez-Delbarrio , J C , Messeguer , X and Rozas , R . 2003 . DnaSP, DNA polymorphism analyses by the coalescent and other methods . Bioinformatics , 19 : 2496 – 2497 .
   PubMed Web of Science ®Google Scholar
• Sala-Bozano , M , Tsalavouta , M and Mariani , S . 2009 . Isolation and characterisation of new polymorphic microsatellite markers for the striped sea bream (Lithognathus mormyrus) . Conservation Genetics , 10 : 1507 – 1509 .
   Web of Science ®Google Scholar
• Sambrook , J , Fritsch , E and Maniatis , T . 1989 . Molecular cloning, a laboratory manual , New York : Cold Spring, Harbor Laboratory Press .
   Google Scholar
• Schneider , S and Excoffier , L . 1999 . Estimation of past demographic parameters from distribution of pairwise differences when the mutation rates vary among sites: application of human mitochondrial DNA . Genetics , 152 : 1079 – 1089 .
   PubMed Web of Science ®Google Scholar
• Schneider , S , Roessli , D and Excoffier , L . 2000 . ARLEQUIN, Version 2.000: a software for population genetics data analysis , Switzerland : University of Geneva .
   Google Scholar
• Shaklee , JB. 1990 . Gene nomenclature for protein-coding loci in fish . Transactions of the American Fisheries Society , 119 : 2 – 15 .
   Web of Science ®Google Scholar
• Slatkin , M and Hudson , R R . 1991 . Pairwise comparisons of mitochon-drial DNA 731 sequences in stable and exponentially growing populations . Genetics , 129 : 555 – 562 .
   PubMed Web of Science ®Google Scholar
• Sneath , P HA and Sokal , R R . 1973 . Numerical taxonomy , San Francisco : Freeman .
   Google Scholar
• Stefanni , S and Thorley , J S . 2003 . Mitochondrial DNA phylogeo graphy reveals the existence of an evolutionarily significant unit of the sand goby Pomatoschistus minutus in the Adriatic (Eastern Mediterranean) . Molecular Phylogenetics and Evolution , 28 : 601 – 609 .
   PubMed Web of Science ®Google Scholar
• Tajima , F. 1989 . The effect of change in population size on DNA polymorphism . Genetics Society of America , 123 : 597 – 601 .
   Google Scholar
• Tamura , K , Dudley , J , Nei , M and Kumar , S . 2007 . MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 . Molecular Biology and Evolution , 24 : 1596 – 1599 .
   PubMed Web of Science ®Google Scholar
• Templeton , A R , Crandall , K A and Sing , C F . 1992 . A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation . Genetics , 132 : 619 – 633 .
   PubMed Web of Science ®Google Scholar
• Thompson , J D , Higgins , D G and Gibson , T J . 1994 . ClustalX: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice . Nucleic Acids Research , 22 : 4673 – 4680 .
   PubMed Web of Science ®Google Scholar
• Van Houdt , J K , Hellemans , B and Volckaert , F AM . 2003 . Phylogenetic relationships among Palearctic and Nearctic burbot (Lota lota): Pleistocene extinctions and recolonization . Molecular Phylogenetics and Evolution , 29 : 599 – 612 .
   PubMed Web of Science ®Google Scholar
• Vigliola , L. 1998 . Contrôle et régulation du recrutement des Sparidae (Poissons, Téléostéens) en Méditerranée: importance des processus pré-et post-installation benthique, PhD thesis, Université de la Méditerranée, France
   Google Scholar
• Watts , R J , Johnson , M S and Black , R . 1990 . Effects of recruitment on genetic patchiness in the urchin Echinometra mathaei in Western Australia . Marine Biology , 105 : 145 – 151 .
   Web of Science ®Google Scholar
• Weir , B S . 1990 . Genetic data analysis , Sunderland, Massachusetts : Sinauer .
   Google Scholar
• Weir , B [S] and Cockerham , C . 1984 . Estimating F-statistics for the analysis of population structure . Evolution , 38 : 1350 – 1358 .
   Web of Science ®Google Scholar
• Wilson , D S and Clarke , A B . 1996 . The shy and the bold . Natural History , 9 : 26 – 28 .
   Google Scholar
• Wright , S. 1969 . Evolution and genetics of populations (Vol. 2). The theory of gene frequencies , Chicago : University of Chicago .
   Google Scholar
• Zardoya , R , Castilho , R , Grande , C , Favre-Krey , L , Caetano , S , Marcato , S , Krey , G and Patarnello , T . 2004 . Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus) in the Mediterranean Sea . Molecular Ecology , 13 : 1785 – 1798 .
   PubMed Web of Science ®Google Scholar
• Zitari-Chatti , R , Chatti , N , Fulgione , D , Caiazza , I , Aprea , G , Elouaer , A , Said , K and Capriglione , T . 2009 . Mitochondrial DNA variation in the caramote prawn Penaeus (Melicertus) kerathurus across a transition zone in the Mediterranean Sea . Genetica , 136 : 439 – 447 .
   PubMed Web of Science ®Google Scholar