Evidence of hybridisation within the genus Chrysoblephus and conserved nuclear sequences of South African sparids (Teleostei: Sparidae)

References

• Barton , NH. 2001 . The role of hybridization in evolution . Molecular Ecology , 10 : 551 – 568 .
   PubMed Web of Science ®Google Scholar
• Burford , MO , Bernardi , G and Carr , MH. 2011 . Analysis of individual year-classes of a marine fish reveals little evidence of first-generation hybrids between cryptic species in sympatric regions . Marine Biology , 158 : 1815 – 1827 .
   Web of Science ®Google Scholar
• Chiba , SN , Iwatsuki , Y , Yoshino , T and Hanzawa , N. 2009 . Comprehensive phylogeny of the family Sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analyses . Genes and Genetic Systems , 84 : 153 – 170 .
   PubMed Web of Science ®Google Scholar
• Chow , S and Hazama , K. 1998 . Universal PCR primers for S7 ribosomal protein gene introns in fish . Molecular Ecology , 7 : 1247 – 1263 .
   PubMed Web of Science ®Google Scholar
• Colgan , DJ , McLauchlan , A , Wilson , GDF , Livingston , GD , Edgecombe , J , Macaranas , J , Cassis , G and Gray , MR. 1999 . Histone H3 and U2 snRNA DNA sequences and arthropod evolution . Australian Journal of Zoology , 46 : 419 – 437 .
   Web of Science ®Google Scholar
• Crispo , E , Moore , JS , Lee-Yaw , JA , Gray , SM and Haller , BC. 2011 . Broken barriers: human-induced changes to gene flow and introgression in animals . Bioessays , 33 : 508 – 518 .
   PubMed Web of Science ®Google Scholar
• Crow , KD , Munehara , H and Bernardi , G. 2010 . Sympatric speciation in a genus of marine reef fishes . Molecular Ecology , 19 : 2089 – 2105 .
   PubMed Web of Science ®Google Scholar
• Griffiths , MH. 2000 . Long-term trends in catch and effort of commercial linefish off South Africa's Cape Province: snapshots of the 20th century . South African Journal of Marine Science , 22 : 81 – 110 .
   Web of Science ®Google Scholar
• Heemstra , P and Heemstra , E. 2004 . Coastal fishes of southern Africa , Grahamstown : National Inquiry Services Centre and South African Institute for Aquatic Biodiversity .
   Google Scholar
• Hewitt , GM. 1988 . Hybrid zones: natural laboratories for evolutionary studies . Trends in Ecology and Evolution , 3 : 158 – 167 .
   PubMed Web of Science ®Google Scholar
• Hobbs , J-PA , Frisch , AJ , Allen , GR and van Herwerden , L. 2009 . Marine hybrid hotspot at Indo-Pacific biogeographic border . Biology Letters , 5 : 258 – 261 .
   PubMed Web of Science ®Google Scholar
• Ivanova , NV , Zemlak , TS , Hanner , RH and Hebert , PDN. 2007 . Universal primer cocktails for fish DNA barcoding . Molecular Ecology Notes , 7 : 544 – 548 .
   Web of Science ®Google Scholar
• Jahner , JP , Shaprio , AM and Forister , ML. 2012 . Drivers of hybridisation in a 66 generation record of Colias butterflies . Evolution , 66 : 818 – 830 .
   PubMed Web of Science ®Google Scholar
• James , NC , Whitfield , KA and Cowley , PC. 2008 . Preliminary indications of climate-induced change in a warm-temperate South African estuarine fish community . Journal of Fish Biology , 72 : 1855 – 1863 .
   Web of Science ®Google Scholar
• Maggs JQ. 2011 . Fish surveys in exploited and protected areas of the Pondoland Marine Protected Area with consideration of the impact of the MPA on coastal fisheries . MSc thesis , University of KwaZulu-Natal , Durban , , South Africa .
   Google Scholar
• Maggs , JQ , Mann , BQ , Els , M and Govender , RD. 2011 . National Marine Linefish System: recreational angling data collection by Ezemvelo KZN Wildlife: 2010 Annual Report , Durban : Oceanographic Research Institute . Unpublished Report No. 292
   Google Scholar
• Murakami , K , James , SA , Randall , JE and Suzumoto , AY. 2007 . Two hybrids of carangid fishes of the genus Caranx, C. ignobilis × C. melampygus and C. melampygus × C. sexfasciatus, from the Hawaiian Islands . Zoological Studies , 46 : 186 – 193 .
   Web of Science ®Google Scholar
• Near , TJ , Bolnick , DI and Wainwright , PC. 2004 . Investigating phylogenetic relationships of sunfishes and black basses (Actinopterygii: Centrarchidae) using DNA sequences from mitochondrial and nuclear genes . Molecular Phylogenetics and Evolution , 32 : 344 – 357 .
   PubMed Web of Science ®Google Scholar
• Palumbi , S , Martin , A , Romano , S , McMillian , WO , Stice , L and Grabowski , G. 1991 . The simple fool's guide to PCR , Honolulu : University of Hawaii .
   Google Scholar
• Posada , D and Crandall , KA. 1998 . MODELTEST: testing the model of DNA substitution . Bioinformatics , 9 : 817 – 818 .
   Web of Science ®Google Scholar
• Pyle , RL and Randall , JE. 1994 . A review of hybridization in marine angel-fishes (Perciformes: Pomacanthidae) . Environmental Biology of Fishes , 41 : 127 – 145 .
   Web of Science ®Google Scholar
• Rhymer , JM and Simberloff , D. 1996 . Extinction by hybridization and intro-gression . Annual Review of Ecology and Systematics , 27 : 83 – 109 .
   Google Scholar
• Roberts , DG , Gray , CA , West , RJ and Ayre , DJ. 2009 . Evolutionary impacts of hybridization and interspecific gene flow on an obligately estuarine fish . Journal of Evolutionary Biology , 22 : 27 – 35 .
   PubMed Web of Science ®Google Scholar
• Ronquist , F and Huelsenbeck , JP. 2003 . MrBayes3: Bayesian phylogenetic inference under mixed models . Bioinformatics , 19 : 1572 – 1574 .
   PubMed Web of Science ®Google Scholar
• Sevilla , RG , Diez , A , Norén , M Mouchel , O . 2007 . Primers and polymerase chain reaction conditions forDNA barcoding teleost fish based on the mitochondrial cytochrome b and nuclear rhodopsin genes . Molecular Ecology Notes , 7 : 730 – 734 .
   Web of Science ®Google Scholar
• Smith , JLB and Smith , MM. 2003 . “ Family No. 183: Sparidae ” . In Smiths’ sea fishes , 2nd edn , Edited by: Smith , MM and Heemstra , PC . 580 – 594 . Cape Town : Struik .
   Google Scholar
• Steeves , TE , Maloney , RF , Hale , ML , Tylianakis , JM and Gemmell , NJ. 2010 . Genetic analyses reveal hybridization but no hybrid swarm in one of the world's rarest birds . Molecular Ecology , 19 : 5090 – 5100 .
   PubMed Web of Science ®Google Scholar
• Tamura , K , Peterson , D , Peterson , N , Stecher , G , Nei , M and Kumar , S. 2011 . Mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods . Molecular Biology and Evolution , 28 : 2731 – 2739 .
   PubMed Web of Science ®Google Scholar
• Teske , PR , von der Heyden , S , McQuaid , CD and Barker , NP. 2011 . A review of marine phylogeography in southern Africa . South African Journal of Science , 107 : 43 – 53 .
   Web of Science ®Google Scholar
• von der Heyden S. 2004 . Testing ubiquitous dispersal and freshwater/marine divergence in free-living protist groups . DPhil thesis , Oxford University , UK .
   Google Scholar
• von der Heyden , S. 2009 . Why do we need to integrate population genetics into South African marine protected area planning? . African Journal of Marine Science , 31 : 263 – 269 .
   Web of Science ®Google Scholar
• von der Heyden , S. 2011 . Carry on sampling’ – assessing marine fish biodiversity and discovery rates in southern Africa . Diversity and Distributions , 17 : 81 – 92 .
   Web of Science ®Google Scholar