A comparison of genetic structure in two low-dispersal crabs from the Wild Coast, South Africa

References

• Ayre DJ, Davis AR, Billingham M, Llorens T, Styan C. 1997. Genetic evidence for contrasting patterns of dispersal in solitary and colonial ascidians. Marine Biology 130: 51–61. doi: 10.1007/s002270050224
   Web of Science ®Google Scholar
• Bandelt HJ, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16: 37–48. doi: 10.1093/oxfordjournals.molbev.a026036
   PubMed Web of Science ®Google Scholar
• Branch GM, Griffiths CL, Branch ML, Beckley LE. 2010. Two oceans: a guide to the marine life of southern Africa. Cape Town: Taylor & Francis.
   Google Scholar
• Dawson J, Griffiths CL. 2012. Revision of the crown crabs, genus Hymenosoma (Crustacea: Hymenosomatidae) of South Africa. African National History 8: 16–29.
   Google Scholar
• Edkins MT, Teske PR, Griffiths CL, Papadopoulos I. 2007. Genetic and morphological analyses suggest that southern African crown crabs, Hymenosoma orbiculare, represent five distinct species. Crustaceana 80: 667–683.
   Google Scholar
• Emanuel BP, Bustamante RH, Branch GM, Eekhout S, Odendaal FJ. 1992. A zoogeographic and functional approach to the selection of marine reserves on the west coast of South Africa. In: Payne AIL, Brink KH, Mann KH, Hilborn R (eds), Benguela trophic functioning. South African Journal of Marine Science 12: 341–354. Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10: 564–567.
   Google Scholar
• Excoffier L, Smouse P, Quattro J. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479–491.
   PubMed Web of Science ®Google Scholar
• Flot JF. 2010. SEQPHASE: a web tool for interconverting PHASE input/output files and FASTA sequence alignments. Molecular Ecology Resources 10: 162–166. doi: 10.1111/j.1755-0998.2009.02732.x
   PubMed Web of Science ®Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294–299.
   PubMedGoogle Scholar
• Grantham BA, Ginny LE, Alan LS. 2003. Dispersal potential of marine invertebrates in diverse habitats. Ecological Applications 13: 108–111. doi: 10.1890/1051-0761(2003)013[0108:DPOMII]2.0.CO;2
   Web of Science ®Google Scholar
• Griffiths CL, Robinson TB, Lange L, Mead A. 2010. Marine biodiversity in South Africa: an evaluation of current states of knowledge. PLoS ONE 5: e12008. doi: 10.1371/journal.pone.0012008
   PubMed Web of Science ®Google Scholar
• Johannesson K, Warmoes T. 1990. Rapid colonization of Belgian breakwaters by the direct developer, Littorina saxatilis (Olivi) (Prosobranchia, Mollusca). In: Johannesson K, Raffaelli DG, Hannaford Ellis CJ (eds), Progress in littorinid and muricid biology. Hydrobiologia 193: 99–108.
   Google Scholar
• Kalinowski ST. 2005. HP-Rare 1.0: a computer program for performing rarefaction on measures of allelic richness. Molecular Ecology Notes 5: 187–189. doi: 10.1111/j.1471-8286.2004.00845.x
   Web of Science ®Google Scholar
• Kinlan BP, Gaines SD. 2003. Propagule dispersal in marine and terrestrial environments: a community perspective. Ecology 84: 2007–2020. doi: 10.1890/01-0622
   Web of Science ®Google Scholar
• Lutjeharms JRE. 2006. The Agulhas Current. Berlin: Taylor & Francis.
   Google Scholar
• Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27: 209–220. Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). Biological Journal of the Linnean Society 104: 407–418. Papadopoulos I, Teske PR. 2014. Larval development reflects biogeography in two formerly synonymised southern African
   Google Scholar
• coastal crabs. African Journal of Aquatic Science 39: 347–350. doi: 10.2989/16085914.2014.938600
   Web of Science ®Google Scholar
• Peakall R, Ruibal M, Lindenmayer DB. 2003. Spatial autocorrelation analysis offers new insights into gene flow in the Australian bush rat, Rattus fuscipes. Evolution 57: 1182–1195. doi: 10.1111/j.0014-3820.2003.tb00327.x
   PubMed Web of Science ®Google Scholar
• Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28: 2537–2539. doi: 10.1093/bioinformatics/bts460
   PubMed Web of Science ®Google Scholar
• Peakall R, Smouse PE, Huff DR. 1995. Evolutionary implications of allozyme and RAPD variation in diploid populations of dioecious buffalograss Buchloë dactyloides. Molecular Ecology 4: 135–147. doi: 10.1111/j.1365-294X.1995.tb00203.x
   Web of Science ®Google Scholar
• Pelc RA, Warner RR, Gaines SD. 2009. Geographical patterns of genetic structure in marine species with contrasting life histories. Journal of Biogeography 36: 1881–1890. doi: 10.1111/j.1365-2699.2009.02138.x
   Web of Science ®Google Scholar
• Roberts MJ, van der Lingen CD, Whittle C, van den Berg M. 2010. Shelf currents, lee-trapped and transient eddies on the inshore boundary of the Agulhas Current, South Africa: their relevance to the KwaZulu-Natal sardine run. African Journal of Marine Science 32: 423–447. doi: 10.2989/1814232X.2010.512655
   Web of Science ®Google Scholar
• Shanks AL. 2009. Pelagic larval duration and dispersal distance revisited. Biological Bulletin 216: 373–385.
   PubMed Web of Science ®Google Scholar
• Smouse PE, Peakall R. 1999. Spatial autocorrelation analysis of individual multi-allele and multi-locus genetic structure. Heredity 82: 561–573. doi: 10.1038/sj.hdy.6885180
   PubMed Web of Science ®Google Scholar
• Stephens AM, Smith NJ, Donnelly P, Stephens CM, Li CFN. 2004. Documentation for PHASE, version 2.1. University of Washington, Taylor & Francis.
   Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski D, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution 30: 2725–2729. doi: 10.1093/molbev/mst197
   PubMed Web of Science ®Google Scholar
• Teske PR. 2014. Connectivity in solitary ascidians: is a 24-h propagule duration sufficient to maintain large-scale genetic homogeneity? Marine Biology 161: 2681–2687. doi: 10.1007/s00227-014-2522-7
   Web of Science ®Google Scholar
• Teske PR, Beheregaray LB. 2009. Intron-spanning primers for the amplification of the nuclear ANT gene in decapod crustaceans. Molecular Ecology Resources 9: 774–776. doi: 10.1111/j.1755-0998.2009.02534.x
   PubMed Web of Science ®Google Scholar
• Teske PR, Papadopoulos I, Barker NP, McQuaid CD, Beheregaray LB. 2014. Mitonuclear discordance in genetic structure across the Atlantic/Indian Ocean biogeographical transition zone. Journal of Biogeography 41: 392–401. doi: 10.1111/jbi.12201
   Web of Science ®Google Scholar
• Teske PR, Papadopoulos I, Mmonwa KL, Matumba TG, McQuaid CD, Barker NP, Beheregaray LB. 2011. Climate-driven genetic divergence of limpets with different life histories across a South East African marine biogeographic disjunction: different processes, same outcome. Molecular Ecology 20: 5025–5041. doi: 10.1111/j.1365-294X.2011.05307.x
   PubMed Web of Science ®Google Scholar
• Teske PR, Papadopoulos I, Newman BK, Dworschak PC, McQuaid CD, Barker NP. 2008. Oceanic dispersal barriers, adaptation and larval retention: an interdisciplinary assessment of potential factors maintaining a phylogeographic break between sister lineages of an African prawn. BMC Evolution Biology 8: 341. doi: 10.1186/1471-2148-8-341
   PubMed Web of Science ®Google Scholar
• Teske PR, Papadopoulos I, Zardi GI, McQuaid CD, Edkins MT, Griffiths CL, Barker NP. 2007. Implications of life history for genetic structure and migration rates of southern African coastal invertebrates: planktonic, abbreviated and direct developers. Marine Biology 152: 697–711. doi: 10.1007/s00227-007-0724-y
   Web of Science ®Google Scholar
• Teske PR, Winker H, McQuaid CD, Barker NP. 2009. A tropical/ subtropical biogeographic disjunction in South Eastern Africa separates two Evolutionarily Significant Units of an estuarine prawn. Marine Biology 156: 1265–1275. doi: 10.1007/s00227-009-1168-3
   Web of Science ®Google Scholar
• von der Heyden S, Prochazka K, Bowie RCK. 2008. Significant population structure and asymmetric gene flow patterns amidst expanding populations of Clinus cottoides (Perciformes, Clinidae): application of molecular data to marine conservation planning in South Africa. Molecular Ecology 17: 4812–4826. doi: 10.1111/j.1365-294X.2008.03959.x
   PubMed Web of Science ®Google Scholar
• Watts RJ, Johnson MS. 2004. Estuaries, lagoons and enclosed embayments: habitats that enhance population subdivision of inshore fishes. Marine and Freshwater Research 55: 641–651. doi: 10.1071/MF04051
   Web of Science ®Google Scholar
• Whitfield AK. 1992. A characterization of southern African estuarine systems. Southern African Journal of Aquatic Science 18: 89–103. Whitfield AK. 2000. Available scientific information on individual South African estuarine systems. WRC Report No. 577/3/00. Pretoria: Taylor & Francis.
   Google Scholar
• Winston JE. 2012. Dispersal in marine organisms without a pelagic larval phase. Integrative and Comparative Biology 52: 447–457. doi: 10.1093/icb/ics040
   PubMed Web of Science ®Google Scholar
• Zardi GI, McQuaid CD, Teske PR, Barker NP. 2007. Unexpected genetic structure of mussel populations in South Africa: indigenous Perna perna and invasive Mytilus galloprovincialis. Marine Ecology Progress Series 337: 135–144. doi: 10.3354/meps337135
   Web of Science ®Google Scholar
• Zeugin JA, Hartley JL. 1985. Ethanol precipitation of DNA. Focus 7: 1–2.
   Google Scholar
• Zulliger D E, Tanner S, Ruch M, Ribi G. 2009. Genetic structure of the high dispersal Atlanto-Mediterranean sea star Astropecten aranciacus revealed by mitochondrial DNA sequences and microsatellite loci. Marine Biology 156: 597–610. doi: 10.1007/s00227-008-1111-z
   Web of Science ®Google Scholar