Effects of kelp Ecklonia maxima inclusion in formulated feed on the growth, feed utilisation and gut microbiota of South African abalone Haliotis midae

References

• Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. doi: 10.1016/S0022-2836(05)80360-2
   PubMed Web of Science ®Google Scholar
• Bansemer MS, Qin JG, Harris JO, Duong DN, Currie K-L, Howarth GS, Stone DAJ. 2016. Dietary inclusions of dried macroalgae meal in formulated diets improve the growth of greenlip abalone (Haliotis laevigata). Journal of Applied Phycology 28: 3645–3658. doi: 10.1007/s10811-016-0829-0
   Web of Science ®Google Scholar
• Britz PJ. 1996. The suitability of selected protein sources for inclusion in formulated diets for the South African abalone, Haliotis midae. Aquaculture 140: 63–73. doi: 10.1016/0044-8486(95)01197-8
   Web of Science ®Google Scholar
• Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. 2010b. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26: 266–267. doi: 10.1093/bioinformatics/btp636
   PubMed Web of Science ®Google Scholar
• Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK et al. 2010a. QIIME allows analysis of high-throughput community-sequencing data. Nature Methods 7: 335–336. doi: 10.1038/nmeth.f.303
   PubMed Web of Science ®Google Scholar
• Chakraborty SB, Horn P, Hancz C. 2014. Application of phytochemicals as growth-promoters and endocrine modulators in fish culture. Reviews in Aquaculture 6: 1–19. doi: 10.1111/raq.12021
   Web of Science ®Google Scholar
• Dang VT, Li Y, Speck P, Benkendorff K. 2011. Effects of micro and macroalgal diet supplementations on growth and immunity of greenlip abalone, Haliotis laevigata. Aquaculture 320: 91–98. doi: 10.1016/j.aquaculture.2011.08.009
   Web of Science ®Google Scholar
• DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EI, Keller K et al. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 72: 5069–5072. doi: 10.1128/AEM.03006-05
   PubMed Web of Science ®Google Scholar
• Dlaza T, Maneveldt G, Viljoen C. 2008. Growth of post-weaning abalone Haliotis midae fed commercially available formulated feeds supplemented with fresh wild seaweed. African Journal of Marine Science 30: 199–203. doi: 10.2989/AJMS.2008.30.1.22.472
   Web of Science ®Google Scholar
• Dong S, Yang J, Zhang XY, Shi M, Song XY, Chen XL, Zhang YZ. 2012. Cultivable alginate lyase-excreting bacteria associated with the arctic brown alga Laminaria. Marine Drugs 10: 2481–2491. doi: 10.3390/md10112481
   PubMed Web of Science ®Google Scholar
• Durazo-Beltrán E, Toro-Vázquez JF, Vásquez-Peláez C, Viana MT. 2003. Effect of the seaweed Macrocystis pyrifera and a formulated diet on growth and fatty acid composition in the green abalone, Haliotis fulgens, under commercial culture conditions. Ciencias Marinas 29: 645–654. doi: 10.7773/cm.v29i42.188
   Web of Science ®Google Scholar
• Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460–2461. doi: 10.1093/bioinformatics/btq461
   PubMed Web of Science ®Google Scholar
• Erasmus JH, Cook PA, Coyne VE. 1997. The role of bacteria in the digestion of seaweed by the abalone Haliotis midae. Aquaculture 155: 377–386. doi: 10.1016/S0044-8486(97)00112-9
   Web of Science ®Google Scholar
• Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G et al. 2011. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research 21: 494–504. doi: 10.1101/gr.112730.110
   PubMed Web of Science ®Google Scholar
• Hammer Ø, Harper D, Ryan P. 2001. PAST: Paleontological Statistics Software Package for education and data analysis. Palaeontologia Electronica 4: 9–18.
   Google Scholar
• Harris JO, Burke CM, Maguire GB. 1998. Characterization of the digestive tract of greenlip abalone, Haliotis laevigata Donovan. I. Morphology and histology. Journal of Shellfish Research 17: 979–988.
   Web of Science ®Google Scholar
• Huang Z-B, Guo F, Zhao J, Li W-D, Ke C-H. 2010. Molecular analysis of the intestinal bacterial flora in cage-cultured adult small abalone, Haliotis diversicolor. Aquaculture Research 41: e760–e769. doi: 10.1111/j.1365-2109.2010.02577.x
   Web of Science ®Google Scholar
• Hughes JB, Hellmann JJ. 2005. The application of rarefaction techniques to molecular inventories of microbial diversity. Methods in Enzymology 397: 292–308. doi: 10.1016/S0076-6879(05)97017-1
   PubMed Web of Science ®Google Scholar
• Iehata S, Inagaki T, Okunishi S, Nakano M, Tanaka R, Maeda H. 2010. Improved gut environment of abalone Haliotis gigantea through Pediococcus sp. Ab1 treatment. Aquaculture 305: 59–65. doi: 10.1016/j.aquaculture.2010.04.012
   Web of Science ®Google Scholar
• Iehata S, Valenzuela F, Riquelme C. 2015. Analysis of bacterial community and bacterial nutritional enzyme activity associated with the digestive tract of wild Chilean octopus (Octopus mimus Gould, 1852). Aquaculture Research 46: 861–873. doi: 10.1111/are.12240
   Web of Science ®Google Scholar
• Jiménez-Escrig A, Gómez-Ordóñez E, Rupérez P. 2012. Brown and red seaweeds as potential sources of antioxidant nutraceuticals. Journal of Applied Phycology 24: 1123–1132. doi: 10.1007/s10811-011-9742-8
   Web of Science ®Google Scholar
• Khan W, Rayirath UP, Subramanian S, Jithesh MN, Rayorath P, Hodges DM et al. 2009. Seaweed extracts as biostimulants of plant growth and development. Journal of Plant Growth Regulation 28: 386–399. doi: 10.1007/s00344-009-9103-x
   Web of Science ®Google Scholar
• King GM, Judd C, Kuske CR, Smith C. 2012. Analysis of stomach and gut microbiomes of the eastern oyster (Crassostrea virginica) from coastal Louisiana, USA. PLoS ONE 7: e51475. doi: 10.1371/journal.pone.0051475
   PubMed Web of Science ®Google Scholar
• Kemp JOG, Britz PJ, Toledo Agüero P. 2015. The effect of macroalgal, formulated and combination diets on growth, survival and feed utilisation in the red abalone Haliotis rufescens. Aquaculture 448: 306–314. doi: 10.1016/j.aquaculture.2015.06.016
   Web of Science ®Google Scholar
• Lahaye M, Kaeffer B. 1997. Seaweed dietary fibres: structure, physico-chemical and biological properties relevant to intestinal physiology. Sciences des Aliments 17: 563–584.
   Web of Science ®Google Scholar
• Lange B, Currie KL, Howarth GS, Stone DAJ. 2014. Grape-seed extract and dried macroalgae, Ulva lactuca Linnaeus, improve survival of greenlip abalone, Haliotis laevigata Donovan, at high water temperature. Aquaculture 433: 348–360. doi: 10.1016/j.aquaculture.2014.06.028
   Web of Science ®Google Scholar
• Lim SN, Cheung PCK, Ooi VEC, Ang PO. 2002 Evaluation of antioxidative activity of extracts from a brown seaweed, Sargassum siliquastrum. Journal of Agricultural and Food Chemistry 50: 3862–3866. doi: 10.1021/jf020096b
   PubMed Web of Science ®Google Scholar
• Mabeau S, Fleurence J. 1993. Seaweed in food products: biochemical and nutritional aspects. Trends in Food Science and Technology 4: 103–107. doi: 10.1016/0924-2244(93)90091-N
   Web of Science ®Google Scholar
• Macey BM, Coyne VE. 2005. Improved growth rate and disease resistance in farmed Haliotis midae through probiotic treatment. Aquaculture 245: 249–261. doi: 10.1016/j.aquaculture.2004.11.031
   Web of Science ®Google Scholar
• Macey BM, Coyne VE. 2006. Colonization of the gastrointestinal tract of the farmed South African abalone Haliotis midae by the probionts Vibrio midae SY9, Cryptococcus sp. SS1, and Debaryomyces hansenii AY1. Marine Biotechnology 8: 246–259. doi: 10.1007/s10126-005-0113-9
   PubMed Web of Science ®Google Scholar
• Maropola MKA, Ramond J-B, Trindade M. 2015. Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench). Journal of Microbiological Methods 112: 104–117. doi: 10.1016/j.mimet.2015.03.012
   PubMed Web of Science ®Google Scholar
• Matcher G, Dorrington R, Henninger T, Froneman P. 2011. Insights into the bacterial diversity in a freshwater-deprived permanently open Eastern Cape estuary, using 16S rRNA pyrosequencing analysis. Water SA 37: 381–390. doi: 10.4314/wsa.v37i3.68489
   Web of Science ®Google Scholar
• Naidoo K, Maneveldt G, Ruck K, Bolton JJ. 2006. A comparison of various seaweed-based diets and formulated feed on growth rate of abalone in a land-based aquaculture system. Journal of Applied Phycology 18: 437–443. doi: 10.1007/s10811-006-9045-7
   Web of Science ®Google Scholar
• Naylor MA, Kaiser H, Jones CLW. 2011. Water quality in a serial-use raceway and its effect on the growth of South African abalone, Haliotis midae Linnaeus, 1758. Aquaculture Research 42: 918–930. doi: 10.1111/j.1365-2109.2010.02660.x
   Web of Science ®Google Scholar
• Naylor MA, Kaiser H, Jones CLW. 2014. The effect of free ammonia nitrogen, pH and supplementation with oxygen on the growth of South African abalone, Haliotis midae L., in an abalone serial-use raceway with three passes. Aquaculture Research 45: 213–224. doi: 10.1111/j.1365-2109.2012.03217.x
   Web of Science ®Google Scholar
• Nel A, Pletschke BI, Britz PJ. 2017. The effect of low-level kelp supplementation on digestive enzyme activity levels in cultured abalone Haliotis midae fed formulated feeds. African Journal of Marine Science 39: X–X.
   Google Scholar
• O’Sullivan L, Murphy B, McLoughlin P, Duggan P, Lawlor PG, Hughes H, Gardiner GE. 2010. Prebiotics from marine macroalgae for human and animal health applications. Marine Drugs 8: 2038–2064. doi: 10.3390/md8072038
   PubMed Web of Science ®Google Scholar
• Pereyre S, Sirand-Pugnet P, Beven L, Charron A, Renaudin H, Barré A et al. 2009. Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital Mycoplasmas. PLoS Genetics 5: e1000677. doi: 10.1371/journal.pgen.1000677
   PubMed Web of Science ®Google Scholar
• Razin S. 2007. Molecular biology and genomics of Mollicutes. Bulletin of Insectology 60: 101–103.
   Web of Science ®Google Scholar
• Santegoeds CM, Ferdelman TG, Muyzer G, De Beer D. 1998. Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms. Applied and Environmental Microbiology 64: 3731–3739.
   PubMed Web of Science ®Google Scholar
• Sawabe T, Oda Y, Shiomi Y, Ezura Y. 1995. Alginate degradation by bacteria isolated from the gut of sea urchins and abalones. Microbial Ecology 30: 193–202. doi: 10.1007/BF00172574
   PubMed Web of Science ®Google Scholar
• Sawabe T, Setoguchi N, Inoue S, Tanaka R, Ootsubo M, Yoshimizu M, Ezura Y. 2003. Acetic-acid production of Vibrio halioticoli from alginate: a possible role for establishment of abalone–V. halioticoli association. Aquaculture 219: 671–679. doi: 10.1016/S0044-8486(02)00618-X
   Web of Science ®Google Scholar
• Sawabe T. 2006. The mutual partnership between Vibrio halioticoli and abalones. In: Thompson FL, Austin B, Swings J (eds), The biology of vibrios, pp 219–230. Washington DC: ASM Press.
   Google Scholar
• Stone DAJ, Bansemer MS, Lange B, Schaefer EN, Howarth GS, Harris JO. 2014. Dietary intervention improves the survival of cultured greenlip abalone (Haliotis laevigata Donovan) at high water temperature. Aquaculture 430: 230–240. doi: 10.1016/j.aquaculture.2014.03.047
   Web of Science ®Google Scholar
• Tanaka R, Ootsubo M, Sawabe T, Ezura Y, Tajima K. 2004. Biodiversity and in situ abundance of gut microflora of abalone (Haliotis discus hannai) determined by culture-independent techniques. Aquaculture 241: 453–463. doi: 10.1016/j.aquaculture.2004.08.032
   Web of Science ®Google Scholar
• Ten Doeschate KI, Coyne VE. 2008. Improved growth rate in farmed Haliotis midae through probiotic treatment. Aquaculture 284: 174–179. doi: 10.1016/j.aquaculture.2008.07.018
   Web of Science ®Google Scholar
• Tugwell S, Branch GM. 1989. Differential polyphenolic distribution among tissues in the kelps Ecklonia maxima, Laminaria pallida and Macrocystis angustifolia in relation to plant-defence theory. Journal of Experimental Marine Biology and Ecology 129: 219–230. doi: 10.1016/0022-0981(89)90104-4
   Web of Science ®Google Scholar
• Viana MT, Cervantes-Trujano M, Solana-Sansores R. 1994. Attraction and palatability activities in juvenile abalone (Haliotis fulgens): nine ingredients used in artificial diets. Aquaculture 127: 19–28. doi: 10.1016/0044-8486(94)90188-0
   Web of Science ®Google Scholar
• Wang Y, Qian P-Y. 2009. Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS ONE 4: e7401. doi: 10.1371/journal.pone.0007401
   PubMed Web of Science ®Google Scholar
• Wegner KM, Volkenborn N, Peter H, Eiler A. 2013. Disturbance-induced decoupling between host genetics and composition of the associated microbiome. BMC Microbiology 13: 252. doi: 10.1186/1471-2180-13-252
   PubMed Web of Science ®Google Scholar
• Yearsley RD, Jones CLW, Britz PJ. 2009. Effect of settled sludge on dissolved ammonia concentration in tanks used to grow abalone (Haliotis midae L.) fed a formulated diet. Aquaculture Research 40: 166–171. doi: 10.1111/j.1365-2109.2008.02078.x
   Web of Science ®Google Scholar