Review of chemosystematics: Multivariate approaches to oral bacteria and yeasts

References

• Brondz I, Olsen I. Review. Microbial chemo-taxonomy. Chromatography electrophoresis and relevant profiling techniques. J Chromatogr 1986; 379: 367–411
   PubMedGoogle Scholar
• Brondz I, Olsen I. Intra-injector methylation of free fatty acids from aerobically and anaerobically cultured Actinobacillus actinomycetemcornitans and Haemophilus aphrophilus. J Chromatogr 1992; 576: 328–33
   PubMedGoogle Scholar
• Brondz I, Olsen I, Greibrokk T. Direct analysis of free fatty acids in bacteria by gas chromatography. J Chromatogr 1983; 274: 299–304
   PubMedGoogle Scholar
• Brondz I, Olsen I. Differentiation of Actinobacillus actinomycetemcomitans from Haemophilus aphrophilus by gas chromatography of hexane extracts from whole cells. J Chromatogr 1983; 278: 13–23
   Google Scholar
• Brondz I. Chemotaxonomy of selected species of the Actinobacillus-Haemophilus-Pasteurella group by means of gas chromatography, gas chroma-tography-mass spectrometry and bioenzymatic methods [thesis]. University of Oslo, Oslo 1985
   Google Scholar
• Brondz I, Olsen I. Differentiation between Actinobacillus actinomyceiemcomitans and Haemophilus aphrophilus based on carbohydrates in lipo-polysaccharide. J Chromatogr 1984; 310: 261–72
   PubMed Web of Science ®Google Scholar
• Kemp W. Organic spectroscopy. 2nd ed. Macmillan Press, London 1978; 185–218
   Google Scholar
• Brondz I, Olsen I, Sjostrom M. Gas chromatographic assessment of alcoholyzed fatty acids from yeasts: a new chemotaxonomic method. J Clin Microbiol 1989; 27: 2815–9
   PubMedGoogle Scholar
• Olsen I. Chemotaxonomy of yeasts. Acta Odontol Scand 1990; 48: 19–25
   PubMed Web of Science ®Google Scholar
• Albandar J M, Olsen I. Nucleic acid probes as potential tools in oral microbial epidemiology. Community Dent Oral Epidemiol 1990; 18: 88–94
   PubMed Web of Science ®Google Scholar
• Albandar J M, Olsen I, Gjermo P. Associations between six DNA probe-detected periodontal bacteria and alveolar bone loss and other clinical signs of periodontitis. Acta Odontol Scand 1990; 48: 415–23
   PubMed Web of Science ®Google Scholar
• Dewhirst F E, Paster B J, Olsen I, Fraser G J. Phy-logeny of 54 representative strains of species in the family Pasteurellaceae as determined by comparison of 16s rRNA sequences. J Bacteriol 1992; 174: 2002–13
   PubMedGoogle Scholar
• Paster B J, Dewhirst F E. Phylogeny of cam-pylobacters, wolinellas, Bacteroides gracilis, and Bacteroides ureolyticus by 16s ribosomal ribo-nucleic acid sequencing. Int J Syst Bacteriol 1988; 38: 56–62
   Google Scholar
• Paster B J, Dewhirst F E, Olsen 1. The phylogeny of Actinobacillus, Haemophilus and Pasteurella by 16s rRNA sequencing [abstract]. J Dent Res 1988; 67: 395, (spec issue)
   Google Scholar
• Paster B J, Dewhirst F E, Bright P L, Olsen I. DNA probes for species and serotypes of Actinobacillus actinomycetemcomitans [abstract]. J Dent Res 1989; 68: 256, (spec issue)
   Google Scholar
• Paster B J, Fraser G J, Dewhirst F E, Olsen I. Phylogeny of Bacteroides and related bacteria [abstract]. J Dent Res 1991; 70: 318, (spec issue)
   Google Scholar
• Olsen I, Johnson J L, Moore L VH, Moore W EC. Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the human gingival crevice and emended descriptions of Lactobacillus minutus. and Streptococcus parvulus. Int J Syst Bacteriol 1991; 41: 261–6
   PubMedGoogle Scholar
• Preus H R, Olsen I. Possible transmittance of A. actinornyceterncomitans from a dog to a child with rapidly destructive periodontitis. J Periodorit Res 1988; 23: 68–71
   PubMedGoogle Scholar
• Vogt N B. Soft modelling and chemosystematics. Chemometr Intellig Lab Syst 1987; 1: 213–31
   Web of Science ®Google Scholar
• Brondz I, Olsen I. Multivariate analysis of cellular fatty acids in Bacteroides, Prevotella, Porphy-romonas, Wolinella, and Campylobacter spp. J Clin Microbiol 1991; 29: 183–9
   PubMed Web of Science ®Google Scholar
• Brondz I, Carlsson J, Sjöström M, Sundqvist G. Significance of cellular fatty acids and sugars in defining the genus Porphyromonas. Int J Syst Bacteriol 1989; 39: 314–8
   Google Scholar
• Brondz I, Olsen I, Sjöström M. Multivariate analysis of quantitative chemical and enzymic characterization data in classification of Actinobacillus, Haemophilus and Pasteurella spp. J Gen Microbiol 1990; 136: 507–13
   PubMedGoogle Scholar
• Brondz I, Olsen I, Haapasalo M, Van Winkelhoff A J. Multivariate analyses of fatty acid data from Preuotella, Bacteroides and Porphyromonas spp. J Gen Microbiol 1991; 137: 1445–52
   PubMedGoogle Scholar
• Brondz I, Fiehn N-E, Olsen I, Sjostrom M. Multi-variate analyses of cellular fatty acids and carbohydrates of 1:2:1 and 2:4:2 spirochetes. APMIS 1991; 99: 567–75
   PubMedGoogle Scholar
• Myhrvold V, Brondz I, Olsen I. Application of multivariate analyses of enzymic data to classification of members of the Actinobacillus-Haemo-philus-Pasteurella group. Int J Syst Bacteriol 1992; 42: 12–8
   PubMedGoogle Scholar
• Brondz I, Olsen I. Multivariate analyses of carbohydrate data from lipopolysaccharides of Acti-nobacillus (Haemophilus) actinomycetemcomitans, Haemophilus aphrophilus, and Haemophilus para-phrophilus. Int J Syst Bacteriol 1990; 40: 405–8
   PubMedGoogle Scholar
• Brondz I, Olsen I. Multivariate analyses of cellular carbohydrates and fatty acids of Candida albicans, Torulopsis glabrata, and Saccharomyces cerevisiae. J Clin Microbiol 1990; 28: 1854–7
   PubMedGoogle Scholar
• Shah H N, Collins M D. Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bac-teroides fragilis and closely related species. Int J Syst Bacteriol 1989; 39: 85–7
   Google Scholar
• Shah H N, Collins M D. Proposal for reclassification of Bacteroides assacharolyticus, Bacteroides gin-givalis, and Bacteroides endodontalis in a new genus, Porphyromonas. Int J Syst Bacteriol 1988; 38: 128–31
   Google Scholar
• Shah H N, Collins M D. Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int J Syst Bacteriol 1990; 40: 205–8
   PubMedGoogle Scholar
• Listgarten M A, Socransky S S. Electron microscopy as an aid in the taxonomic differentiation of oral spirochetes. Arch Oral Biol 1965; 10: 127–38
   PubMedGoogle Scholar
• Yarrow D, Meyer S A. Proposal for amendment of the diagnosis of the genus Candida Berkhout nomcons. Int J Syst Bacteriol 1978; 28: 611–5
   Google Scholar
• Serensen B, Falk E S, Wisløiff-Nilsen E, Bjorvatn B, Kristiansen B E. Multivariate analysis of Neisseria DNA restriction endonuclease restriction patterns. J Gen Microbiol 1985; 131: 3099–104
   PubMedGoogle Scholar
• Jantzen E, Kvalheim O M, Hauge T A, Hagen N, Bevre K. Grouping of bacteria by Simca pattern recognition on gas chromatographic lipid data: patterns among Moraxella and rod-shaped Neisseria. System Appl Microbiol 1987; 9: 142–50
   Google Scholar
• Blomquist G, Johanson E, Soderstrom B, Wold S. Classification of fungi by means of pyrolysis-gas chromatography-pattern recognition. J Chromatogr 1979; 173: 19–32
   PubMedGoogle Scholar
• Joliffe I T. Principal component analysis. Springer- Verlag, New York 1986
   Google Scholar
• Wold S, Esbensen K, Geladi P. Principal component analysis. Chemometr Intell Lab Syst 1987; 2: 37–52
   Web of Science ®Google Scholar
• Wold S. Pattern recognition by means of disjoint principal components models. Pattern Recog 1976; 8: 127–39
   Web of Science ®Google Scholar
• Geladi P, Kowalski B R. Partial least squares regression: a tutorial. Anal Chim Acta 1986; 185: 1–17
   Web of Science ®Google Scholar
• Wold S, Albano C, Dunn WJ, III. Pattern recognition: finding and using regularities in multi variate data. Food research and data analysis, H Martens, H Russwurm. Applied Sciences Publishers, London 1983; 147–88
   Google Scholar
• Wold S. Cross-validatory estimation of the number of components in factor and principal components models. Technometrics 1978; 20: 397–405
   Web of Science ®Google Scholar
• Olsen I, Brondz I. Differentiation among closely related organisms of the Actinobacillus-Haemo-philus-Pasteurella group by means of lysozyme and EDTA. J Clin Microbiol 1985; 22: 629–36
   PubMedGoogle Scholar
• Brondz I, Olsen I. Differentiation between closely related organisms within Actinobacillus, Haemophilus, Pasteurella, Streptococcus, and Bacteroides by enzymatic reduction of methylene blue. 2nd European Congress of Clinical Microbiology. 1985, abstr no 21/9
   Google Scholar
• Brondz I, Olsen I. Differentiation between major species of the Actinobacillus-Haemophilus-Pas-teurella group by gas chromatography of tri-fluoroacetic acid anhydride derivatives from whole-cell methanolysates. J Chromatogr 1985; 342: 13–23
   PubMedGoogle Scholar
• Caugant D A, Selander R K, Olsen I. Differentiation between Actinobacillus (Haemophilus) actinomycetemcomitans, Haemophilus aphrophilus and Haemophilus paraphrophilus by multilocus enzyme electrophoresis. J Gen Microbiol 1990; 136: 2135–41
   PubMedGoogle Scholar
• Bolstad A I, Kristoffersen T, Olsen I. Outer membrane proteins of Actinobacillus actinomycetemcomitans and Haemophilus aphrophilus studied by SDS-PAGE and immunoblotting. Oral Microbiol Immunol 1990; 5: 155–61
   PubMedGoogle Scholar
• Holt S C, Bramanti T E. Factors in virulence expression and their role in periodontal disease pathogenesis. Crit Rev Oral Biol Med 1991; 2: 177–281
   PubMedGoogle Scholar
• Page R C, Sims T J, Engel L D. The immu-nodominant outer membrane antigen of Actinobacillus actinomycetemcomitam is located in the serotype-specific high-molecular-mass carbohydrate moiety of lipopolysaccharide. Infect Immun 1991; 59: 3451–62
   PubMed Web of Science ®Google Scholar
• Sims T J, Moncla B J, Darveau R P, Page R C. Antigens of Actinobacillus actinomycetemcomitans recognized by patients with iuvenile periodontitis and periodontally normal subjects. Infect Immun 1991; 59: 913–24
   PubMed Web of Science ®Google Scholar
• Hamada S, Koga T, Nishihara T, Fujiwara T, Oka-Hashi N. Characterization and immunobiologic activities of lipopolysaccharides from periodontal bacteria. Adv Dent Res 1988; 2: 284–94
   PubMedGoogle Scholar
• Nishihara T, Koga T, Hamada S. Extracellular pro-teinaceous substances from Haemophilus actinomycetemcomitans induce mitogenic responses in murine lymphocytes. Oral Microbiol Immunol 1987; 2: 48–52
   PubMedGoogle Scholar
• Nishihara T, Fujiwara T, Koga T, Hamada S. Chemical composition and immunobiological properties of lipopolysaccharide and lipid-associ-ated proteoglycan from Actinobacillus actinomycetemcomitans. J Periodont Res 1986; 21: 521–30
   PubMedGoogle Scholar
• Bryn K, Jantzen E. Analysis of lipopolysaccharides by methanolysis, trifluoroacetylation, and gas chromatography on a fused-silica capillary column. J Chromatogr 1982; 240: 405–13
   Google Scholar
• Brondz I, Olsen I. Chemical differences in lipo-polysaccharides from Actinobacillus (Haemophilus) actinomyceterncomitam and Haemophilus aphrophilus: clues to differences in periodontopathogenic potential and taxonomic distinction. Infect Immun 1989; 57: 3106–9
   PubMedGoogle Scholar
• Kiley P, Holt S C. Characterization of the lipo-polysaccharide from Actinobacillus actinomycetemcomitans Y4 and N27. Infect Immun 1980; 30: 862–73
   PubMed Web of Science ®Google Scholar
• Wilson M E, Shifferle R E. Evidence that the sero-type b antigenic determinant of Actinobacillus actinomycetemcomitans Y4 resides in the polysaccha-ride moiety of lipopolysaccharide. Infect Immun 1991; 59: 1544–51
   PubMed Web of Science ®Google Scholar
• Galanos C, Jiao B, Komuro T, Freudenberg M A, Liideritz O. Large-scale fractionation of S-form lipopolysaccharide from Salmonella abortus equi. Chemical and serological characterization. J Chromatogr 1988; 440: 397–404
   PubMedGoogle Scholar
• Hoover C I. Electrophoretic heterogeneity of lipo-polysaccharides of Actinobacillus actinomycetemcomitans. J Dent Res 1988; 67: 5746
   Google Scholar
• Griffen A L, Leys E J, Liu X, Hugo E R, Fuerst P A. Sequencing of Actinobacillus actinomycetemcomitans rDNA spacer region for strain analysis [abstract]. J Dent Res 1992; 71: 190, (spec issue)
   Google Scholar
• Preus H R, Haraszthv V, Zambon J J. Amtdification of A. actinomycetemcomitans DNA polymorphisms using PCR and random primers. J Dent Res 1992; 71(spec issue)122
   Google Scholar
• Tanner A CR, Visconti R A, Socransky S S, Holt S C. Classification and identification of Actinobacillus actinomycetemcomitam and Haemophilus aphro-philus by cluster analysis and deoxyribonucleic acid hvbridizations. J Periodont Res 1982; 17: 585–96
   PubMedGoogle Scholar
• Bgehni P, Tsai C-C, McArthur W P, Hammond B F, Shenker B J, Taichman N S. Leukotoxic activity in different strains of the bacterium Actinobacillus actinomycetemcomitam isolated from juvenile periodontitis in man. Arch Oral Biol 1981; 26: 671–6
   PubMedGoogle Scholar
• Calhoon D A, Mayberry W R, Slots J. Cellular fatty acid and soluble protein composition of Actinobacillus actinomycetemcomitans and related organisms. J Clin Microbiol 1981; 14: 376–82
   PubMedGoogle Scholar
• Jellum E, Tingelstad V, Olsen I. Differentiation between Actinobacillus actinomycetemcomitans and Haemophilus aphrophilus by high-resolution, two-dimensional protein electrophoresis. Int J Syst Bac-teriol 1984; 34: 478–83
   Google Scholar
• King E O, Tatu H W. Actinobacillus actinomycetemcomitans and Haemophilus aphrophilus. J Infect Dis 1962; 111: 85–94
   PubMedGoogle Scholar
• Olsen I, Rosseland S K, Thorsrud A K, Jellum E. Differentiation between Haemophilus paraphro-philus, H. aphrophilus, H. influenzae, Actino bacillus actinomyceterncomitam, Pasteurella multocida, P. haemolytica, and P. ureae b'y high resolution two-dimensional electrophoresis. Elec-trophoresis 1987; 8: 532–5
   Google Scholar
• Slots J, Reynolds H S, Genco R J. Actinobacillus actinomycetemcomitam in human periodontal disease: a cross-sectional microbiological investigation. Infect Immun 1980; 29: 1013–20
   PubMed Web of Science ®Google Scholar
• Zambon J J, Sunday G J, Smutko J S. Molecular genetic analysis of Actinobacillus actinomycetemcomitam epidemiology. J Periodontol 1990; 61: 75–80
   PubMedGoogle Scholar
• Collins M D, Shah H N. Recent advances in the taxonomy of the genus Bacteroides. Recent advances in anaerobic bacteriology, S P Borriello, J M Hardie, B S Draser, B I Duerden, M J Hudson, R J Lysons. Martinus Nijhoff Publishers, Dordrecht 1987; 249–58
   Google Scholar
• Shah H N, Collins M D. Genus Bacteroides: a chem-otaxonomical perspective. J Appl Bacteriol 1983; 55: 403–16
   PubMedGoogle Scholar
• Shah H N, Gharbia S E. Bacteroides and Fuso-bacterium: classificatiori and relationships tci other bacteria. Anaerobes in human disease, S P Borriello, B S Drasar. Edward Arnold, London 1991; 62–84
   Google Scholar
• Jackson F L, Goodman Y E. Bacteroides ureolyticus, a new species to accomodate strains previously identified as ‘Bacteroides corrodens, anaerobic’. Int J Syst Bacteriol 1978; 28: 197–200
   Google Scholar
• Taylor A J, Dawson C A, Owen R J. The identification of Bacteroides ureolyticus from patients with non-gonococcal urethritis by conventional biochemical tests and by DNA and protein analyses. J Med Microbiol 1986; 21: 109–16
   PubMedGoogle Scholar
• Vandamme P, De Ley J. Proposal for a new family, Campylobacteraceae. Int J Syst Bacteriol 1991; 41: 451–5
   Google Scholar
• Vandamme P, Falsen E, Rossau R. Rwision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int J Syst Balcteriol 1991; 41: 88–103
   PubMedGoogle Scholar
• Engelhard E, Mutters R. Rapid differentiation of the species of the genus Bacteroides sensu stricto by capillary gas chromatography of cellular icarbohydrates. J Appl Bacteriol 1991; 70: 216–20
   PubMedGoogle Scholar
• Brondz I, Olsen I. Sugars and fatty acids of T. denticola determined from whole-cell methanolys-ates with GC and GC-MS. J Dent Res 1989; 68(spec issue)357
   Google Scholar
• Cockayne A, Sanger R, Ivic A. Antigenic and structural analysis of Treponema denticola. J Gen Microbiol 1989; 135: 3209–18
   PubMedGoogle Scholar
• Fiehn N-E. Small-sized oral spirochetes and periodontal disease. APMIS 1989; 97: 1–31, Suppl 7
   PubMedGoogle Scholar
• Jantzen E, Bryn K, Hagen N, Bergan T, Bøvre K. Fatty acids and monosaccharides of Neisseriaceae in relation to established taxonomy. NIPH Ann 1978; 1: 59–71
   Google Scholar