Molecular analysis of the rpsL gene for rapid detection of streptomycin-resistant Mycobacterium tuberculosis: a meta-analysis

References

• World Health Organization. Global Tuberculosis Control Report. Geneva: WHO; 2013. Available at: http://www.who.int/tb/publications/global_report/en/ (accessed March 2014).
   Google Scholar
• Long R. Drug-resistant tuberculosis. CMAJ 2000;163: 425–8.
   PubMed Web of Science ®Google Scholar
• Gandhi NR, Nunn P, Dheda K, Schaaf HS, Zignol M, Van Soolingen D, et al. Multidrug-resistant and extensively drug-resistant tuberculosis: a threat to global control of tuberculosis. Lancet 2010;375:1830–43.
   PubMed Web of Science ®Google Scholar
• Dalton T, Cegielski P, Akksilp S, Asencios L, Caoili JC, Cho SN, et al. Prevalence of and risk factors for resistance to second-line drugs in people with multidrug-resistant tuberculosis in eight countries: a prospective cohort study. Lancet 2012;380:1406–17.
   PubMed Web of Science ®Google Scholar
• Pontali E, Matteelli A, Migliori GB. Drug-resistant tuberculosis. Curr Opin Pulm Med 2013;19:266–72.
   PubMed Web of Science ®Google Scholar
• Kim S. Drug-susceptibility testing in tuberculosis: methods and reliability of results. Eur Respir J 2005;25:564–9.
   PubMed Web of Science ®Google Scholar
• Xu HB, Jiang RH, Sha W, Li L, Xiao HP. PCR-single-strand conformational polymorphism method for rapid detection of rifampin-resistant Mycobacterium tuberculosis: systematic review and meta-analysis. J Clin Microbiol 2010;48: 3635–40.
   PubMed Web of Science ®Google Scholar
• Finken M, Kirschner P, Meier A, Wrede A, Böttger EC. Molecular basis of streptomycin resistance in Mycobacterium tuberculosis: alterations of the ribosomal protein S12 gene and point mutations within a functional 16S ribosomal RNA pseudoknot. Mol Microbiol 1993;9:1239–46.
   PubMed Web of Science ®Google Scholar
• Sharma D, Cukras AR, Rogers EJ, Southworth DR, Green R. Mutational analysis of S12 protein and implications for the accuracy of decoding by the ribosome. J Mol Biol 2007;374:1065–76.
   Google Scholar
• Sreevatsan S, Pan X, Stockbauer KE, Williams DL, Kreiswirth BN, Musser JM. Characterization of rpsL and rrs mutations in streptomycin-resistant Mycobacterium tuberculosis isolates from diverse geographic localities. Antimicrob Agents Chemother 1996;40:1024–6.
   PubMed Web of Science ®Google Scholar
• Sun YJ, Luo JT, Wong SY, Lee A. Analysis of rpsL and rrs mutations in Beijing and non-Beijing streptomycin-resistant Mycobacterium tuberculosis isolates from Singapore. Clin Microbiol Infect 2010;16:287–9.
   PubMed Web of Science ®Google Scholar
• Tracevska T, Jansone I, Nodieva A, Marga O, Skenders G, Baumanis V. Characterisation of rpsL, rrs and embB mutations associated with streptomycin and ethambutol resistance in Mycobacterium tuberculosis. Res Microbiol 2004;155:830–4.
   PubMed Web of Science ®Google Scholar
• Jnawali HN, Yoo H, Ryoo S, Lee KJ, Kim BJ, Koh WJ, et al. Molecular genetics of Mycobacterium tuberculosis resistant to aminoglycosides and cyclic peptide capreomycin antibiotics in Korea. World J Microbiol Biotechnol 2013; 29:975–82.
   PubMed Web of Science ®Google Scholar
• Nhu NT, Lan NT, Phuong NT, Chau Nv, Farrar J, Caws M. Association of streptomycin resistance mutations with level of drug resistance and Mycobacterium tuberculosis genotypes. Int J Tuberc Lung Dis 2012;16:527–31.
   PubMed Web of Science ®Google Scholar
• Shi R, Zhang J, Li C, Kazumi Y, Sugawara I. Detection of streptomycin resistance in Mycobacterium tuberculosis clinical isolates from China as determined by denaturing HPLC analysis and DNA sequencing. Microbes Infect 2007;9:1538–44.
   PubMed Web of Science ®Google Scholar
• Whiting P, Rutjes AW, Reitsma JB, Bossuyt PM, Kleijnen J. The development of QUADAS: a tool for the quality assessment of studies of diagnostic accuracy included in systematic reviews. BMC Med Res Methodol 2003;3:25.
   PubMedGoogle Scholar
• Zamora J, Abraira V, Muriel A, Khan K, Coomarasamy A. Meta-DiSc: a software for meta-analysis of test accuracy data. BMC Med Res Methodol 2006;6:31.
   PubMedGoogle Scholar
• Glas AS, Lijmer JG, Prins MH, Bonsel GJ, Bossuyt PM. The diagnostic odds ratio: a single indicator of test performance. J Clin Epidemiol 2003;56:1129–35.
   PubMed Web of Science ®Google Scholar
• Midgette AS, Stukel TA, Littenberg B. A meta-analytic method for summarizing diagnostic test performances receiver-operating-characteristic-summary point estimates. Med Decis Making 1993;13:253–7.
   PubMed Web of Science ®Google Scholar
• Irwig L, Macaskill P, Glasziou P, Fahey M. Meta-analytic methods for diagnostic test accuracy. J Clin Epidemiol 1995;48:119–30.
   PubMed Web of Science ®Google Scholar
• Irwig L, Tosteson AN, Gatsonis C, Lau J, Colditz G, Chalmers TC, et al. Guidelines for meta-analyses evaluating diagnostic tests. Ann Intern Med 1994;120:667–76.
   PubMed Web of Science ®Google Scholar
• Yadav R, Sethi S, Mewara A, Dhatwalia SK, Gupta D, Sharma M. Rapid detection of rifampicin, isoniazid and streptomycin resistance in Mycobacterium tuberculosis clinical isolates by high-resolution melting curve analysis. J Appl Microbiol 2012;113:856–62.
   PubMed Web of Science ®Google Scholar
• Feuerriegel S, Oberhauser B, George AG, Dafae F, Richter E, Rüsch-Gerdes S, et al. Sequence analysis for detection of first-line drug resistance in Mycobacterium tuberculosis strains from a high-incidence setting. BMC Microbiol 2012;12:90.
   PubMed Web of Science ®Google Scholar
• Lee AS, Ong DC, Wong JC, Siu GK, Yam WC. High- resolution melting analysis for the rapid detection of fluoroquinolone and streptomycin resistance in Mycobacterium tuberculosis. PLoS One 2012;7:e31934.
   PubMed Web of Science ®Google Scholar
• Hu Y, Hoffner S, Jiang W, Wang W, Xu B. Genetic characterisation of drug-resistant Mycobacterium tuberculosis in rural China: a population-based study. Int J Tuberc Lung Dis 2010;14:210–6.
   PubMed Web of Science ®Google Scholar
• Brossier F, Veziris N, Aubry A, Jarlier V, Sougakoff W. Detection by GenoType MTBDRsl test of complex mechanisms of resistance to second-line drugs and ethambutol in multidrug-resistant Mycobacterium tuberculosis complex isolates. J Clin Microbiol 2010;48:1683–9.
   PubMed Web of Science ®Google Scholar
• Wang YC, Zhu RY, Xu YY, Zhao MQ, Liu YH, Li B, et al. Molecular characterization of drug resistant Mycobacterium tuberculosis isolates in Guangdong, China. Jpn J Infect Dis 2009;62:270–4.
   PubMed Web of Science ®Google Scholar
• Das R, Gupta P, Singh P, Chauhan D, Katoch K, Katoch V. Association of mutations in rpsL gene with high degree of streptomycin resistance in clinical isolates of Mycobacterium tuberculosis in India. Indian J Med Res 2009;129:108.
   PubMed Web of Science ®Google Scholar
• Perdigao J, Macedo R, Joao I, Fernandes E, Brum L, Portugal I. Multidrug-resistant tuberculosis in Lisbon, Portugal: a molecular epidemiological perspective. Microb Drug Resist 2008;14:133–43.
   PubMed Web of Science ®Google Scholar
• Okamoto S, Tamaru A, Nakajima C, Nishimura K, Tanaka Y, Tokuyama S, et al. Loss of a conserved 7-methylguanosine modification in 16S rRNA confers low-level streptomycin resistance in bacteria. Mol Microbiol 2007;63:1096–106.
   PubMed Web of Science ®Google Scholar
• Brzostek A, Sajduda A, Sliwinski T, Augustynowicz-Kopec E, Jaworski A, Zwolska Z, et al. Molecular characterisation of streptomycin-resistant Mycobacterium tuberculosis strains isolated in Poland. Int J Tuberc Lung Dis 2004;8:1032–5.
   PubMed Web of Science ®Google Scholar
• Fukuda M, Koga H, Ohno H, Yang B, Hirakata Y, Maesaki S, et al. Relationship between genetic alteration of the rpsL gene and streptomycin susceptibility of Mycobacterium tuberculosis in Japan. J Antimicrob Chemother 1999; 43:281–4.
   PubMed Web of Science ®Google Scholar
• Katsukawa C, Tamaru A, Miyata Y, Abe C, Makino M, Suzuki Y. Characterization of the rpsL and rrs genes of streptomycin-resistant clinical isolates of Mycobacterium tuberculosis in Japan. J Appl Microbiol 1997;83:634–40.
   PubMed Web of Science ®Google Scholar
• Gegia M, Mdivani N, Mendes RE, Li H, Akhalaia M, Han J, et al. Prevalence of and molecular basis for tuberculosis drug resistance in the Republic of Georgia: validation of a QIAplex system for detection of drug resistance-related mutations. Antimicrob Agents Chemother 2008;52:725–9.
   PubMed Web of Science ®Google Scholar
• Li GL, Zhao DF, Xie T, Ju HF, Mu C, Zhao H, et al. Molecular characterization of drug-resistant Beijing family isolates of Mycobacterium tuberculosis from Tianjin, China. Biomed Environ Sci 2010;23:188–93.
   PubMed Web of Science ®Google Scholar
• Wang F, Shen H, Guan M, Wang Y, Feng Y, Weng X, et al. High-resolution melting facilitates mutation screening of rpsL gene associated with streptomycin resistance in Mycobacterium tuberculosis. Microbiol Res 2011;166: 121–8.
   PubMedGoogle Scholar
• Lee MF, Chen YH, Hsu HJ, Peng CF. One-tube loop- mediated isothermal amplification combined with restriction endonuclease digestion and ELISA for colorimetric detection of resistance to isoniazid, ethambutol and streptomycin in Mycobacterium tuberculosis isolates. J Microbiol Methods 2010;83:53–8.
   PubMed Web of Science ®Google Scholar
• Wu XQ, Lu Y, Zhang JX, Liang JQ, Zhang GY, Li HM, et al. Detection of streptomycin resistance in Mycobacterium tuberculosis clinical isolates using four molecular methods in China. Acta Genetica Sinica 2006;33:655–63.
   PubMedGoogle Scholar
• Nachamkin I, Kang C, Weinstein MP. Detection of resistance to isoniazid, rifampin, and streptomycin in clinical isolates of Mycobacterium tuberculosis by molecular methods. Clin Infect Dis 1997;24:894–900.
   PubMed Web of Science ®Google Scholar
• Connolly LE, Edelstein PH, Ramakrishnan L. Why is long-term therapy required to cure tuberculosis?PLoS Med 2007;4:e120.
   PubMed Web of Science ®Google Scholar
• Lijmer JG, Bossuyt PM, Heisterkamp SH. Exploring sources of heterogeneity in systematic reviews of diagnostic tests. Stat Med 2002;21:1525–37.
   PubMed Web of Science ®Google Scholar
• Deeks JJ. Systematic reviews in health care: systematic reviews of evaluations of diagnostic and screening tests. BMJ 2001;323:157.
   PubMed Web of Science ®Google Scholar