Variability in Hepatitis B Virus DNA: Phylogenetic, Epidemiological and Clinical Implications

References

• Tiollais P, Pourcel C, Dejean A. The hepatitis B virus. Nature 1985; 317: 489–495
   PubMed Web of Science ®Google Scholar
• Raney A K, McLachlan A. The biology of hepatitis B virus. Molecular biology of the hepatitis B virus, A McLachlan. CRC Press, Boca Raton, FL 1991; 1–37
   Google Scholar
• Zhou Y J. A virus possibly associated with with hepatitis and hepatoma in ducks. Shanghai Med J 1980; 3: 641–644
   Google Scholar
• Summers J, Smolec J M, Snyder R. A virus similar to human hepatitis B virus associated with hepatitis and hepatoma in woodchucks. Proc Natl Acad Sci USA 1978; 75: 4533–4537
   PubMed Web of Science ®Google Scholar
• Sherlock S. Diseases of the liver and biliary system. Blackwell, Oxford 1985
   Google Scholar
• Beasley R P, Hwang L Y, Lin C C, Chien C S. Hepatocellular carcinoma and HBV: a prospective study of 22,707 men in Taiwan. Lancet 1981; ii: 1129–1133
   Google Scholar
• Feitelson M A. Biology of hepatitis B virus variants. Lab Invest 1994; 71: 324–349
   PubMedGoogle Scholar
• Dane D S, Cameron C H, Briggs M. Virus-like particles in serum of patients with Australia-antigen-associated hepatitis. Lancet 1970; i: 695–698
   Google Scholar
• Heermann K-H, Gerlich W H. Surface proteins of hepatitis B viruses. Molecular biology of the hepatitis B virus, A McLachlan. CRC Press, Boca Raton, FL 1991; 109–143
   Google Scholar
• Itoh Y, Takai E, Ohnuma H, Kitajima K, Tsuda F, Machida A, Mishiro S, Nakamura T, Miyakawa Y, Mayumi M. A synthetic peptide vaccine involving the product of the pre-S(2) region of hepatitis B virus DNA: protective efficacy in chimpanzees. Proc Natl Acad Sci USA 1986; 83: 9174–9178
   PubMedGoogle Scholar
• Magnius L O, Espmark LÅ. New specificities in Australia antigen positive sera distinct from Le Bouvier determinants. J Immunol 1972; 109: 1017–1021
   PubMed Web of Science ®Google Scholar
• Rossner M T. Hepatitis B virus X-gene product: a promiscuous transcriptional activator. J Med Virol 1992; 36: 101–117
   PubMedGoogle Scholar
• Ganem D, Varmus H E. The molecular biology of the hepatitis B viruses. Ann Rev Biochem 1987; 56: 651–693
   PubMed Web of Science ®Google Scholar
• Junker-Niepmann M, Bartenschlager R, Schaller H. A short cis-acting sequence is required for hepatitis B virus pregenome encapsidation and sufficient for packaging of foreign RNA. EMBO J 1990; 9: 3389–3396
   PubMed Web of Science ®Google Scholar
• Ganem D, Pollack J R, Tavis J. Hepatitis B virus reverse transciptase and its many roles in hepadnaviral genomic replication. Infect Agent Dis 1994; 3: 85–93
   PubMedGoogle Scholar
• Stevens C E, Beasley R P, Lin C C, Hwang L-Y, Sun T-S, Hsieh F-J, Wang K-Y, Szmuness W. Perinatal hepatitis B virus, infection: use of hepatitis B immune globulin. Viral hepatitis 1981 International Symposium, W Szmuness, H J Alter, J E Maynard. Franklin Institute, Philadelphia 1982; 527–535
   Google Scholar
• Brechot C, Pourcel C, Louise A, Rain B, Tiollais P. Presence of integrated hepatitis B virus sequences in cellular DNA of human hepatocellular carcinoma. Nature 1980; 286: 533–535
   PubMed Web of Science ®Google Scholar
• Ayoola E A. Viral hepatitis in Africa. Viral hepatitis and liver diseases, A J Zuckerman. AR Liss, New York 1988; 161–169
   Google Scholar
• Milne A, Allwood G K, Moyes C D, Pearce N E, Lucas C R. Prevalence of hepatitis B infection in a multiracial New Zealand community. NZ Med J 1985; 98: 529–532
   PubMedGoogle Scholar
• Le Bouvier G. The heterogeneity of Australia antigen. J Infect Dis 1971; 123: 671–675
   PubMed Web of Science ®Google Scholar
• Bancroft W H, Mundon F K, Russell P K. Detection of additional antigenic determinants of hepatitis B antigen. J Immunol 1972; 109: 842–848
   PubMed Web of Science ®Google Scholar
• Okamoto H, Imai M, Miyakawa Y, Mayumi M. Site-directed mutagenesis of hepatitis B surface antigen sequence at codon 160 from arginine to lysine for conversion of subtypic determinant from r to w. Biochem Biophys Res Comm 1987; 148: 500–504
   PubMedGoogle Scholar
• Okamoto H, Imai M, Tsuda F, Tanaka T, Miyakawa Y, Mayumi M. Point mutation in the S gene of hepatitis B virus for dly or w/r subtypic change in two blood donors carrying a surface antigen of compound subtype adyr or adwr. J Virol 1987; 61: 3030–3034
   PubMedGoogle Scholar
• Courouce-Pauty A-M, Plancon A, Soulier J P. Distribution of HBsAg subtypes in the world. Vox Sang 1983; 44: 197–211
   PubMedGoogle Scholar
• Norder H, Courouce A-M, Magnius L O. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 1994; 198: 489–503
   PubMed Web of Science ®Google Scholar
• Okamoto H, Tsuda F, Sakugawa H, Sastroewignjo R I, Imai M, Miyakawa Y, Mayumi M. Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes. J Gen Virol 1988; 69: 2575–2583
   PubMed Web of Science ®Google Scholar
• Norder H, Hammas B, Löfdahl S, Courouce A M, Magnius L O. Comparisons of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains. J Gen Virol 1992; 73: 1201–1208
   PubMedGoogle Scholar
• Naumann H, Schaefer S, Yoshida C FT, Gaspar A MC, Repp R, Gerlich W H. Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4. J Gen Virol 1993; 74: 1627–1632
   PubMedGoogle Scholar
• Kidd-Ljunggren K, Öberg M, Kidd A H. The hepatitis B virus X gene: analysis of functional domain variation and gene phylogeny using multiple sequences. J Gen Virol 1995; 76: 2119–2130
   PubMedGoogle Scholar
• Norder H, Hammas B, Lee S-D, Bile K, Courouce A-M, Mushawar I, Magnius L O. Genetic relatedness of hepatitis B viral strains of diverse geographical origin and natural variations in the primary structure of the surface antigen. J Gen Virol 1993; 74: 1341–1348
   PubMedGoogle Scholar
• Gerken G, Kremsdorf D, Capel F, Petit M A, Dauguet C, Manns M P, Meyer zum Buschenfelde K-H, Brechot C. Hepatitis B defective virus with rearrangements in the pre-S gene during chronic HBV infection. Virology 1991; 183: 555–565
   PubMedGoogle Scholar
• Melegari M, Bruno S, Wands J R. Properties of hepatitis B virus pre-S 1 deletion mutants. Virology 1994; 199: 292–300
   PubMed Web of Science ®Google Scholar
• Nakajima E, Minami M, Ochiya T, Kagawa K, Okanoue T. Pre-S 1 deleted variants of hepatitis B virus in patients with chronic hepatitis. J Hepatol 1994; 20: 329–335
   PubMedGoogle Scholar
• Ficrdalisi G, Ghiotto F, Caastenuovo F, Primi D, Cariani E. Analysis of the hepatitis B virus genome and immune response in HBsAg, anti-HBs positive chronic hepatitis. J Hepatol 1994; 20: 487–493
   PubMedGoogle Scholar
• Santantonio T, Jung M-C, Schneider R, Fernholz D, Milella M, Monno L, Pastore G, Pape G R, Will H. Hepatitis B virus genomes that cannot synthesize pre-S2 proteins occur frequently and as dominant virus populations in chronic carriers in Italy. Virology 1992; 188: 948–952
   PubMed Web of Science ®Google Scholar
• Yamamoto K, Horikita M, Tsuda F, Itoh K, Akahane Y, Yotsumoto S, Okamoto H, Miyakawa Y, Mayumi M. Naturally occurring escape mutants of hepatitis B virus with various mutations in the S gene in carriers seropositive for antibody to hepatitis B surface antigen. J Virol 1994; 68: 2671–2676
   PubMedGoogle Scholar
• Kidd-Ljunggren K, Ekdahl K, Öberg M, Kurathong S, Lolekha S. Hepatitis B virus strains in Thailand: genomic variants in chronic carriers. J Med Virol 1995; 47: 454–461
   PubMedGoogle Scholar
• Brown S E, Howard C R, Zuckerman A J, Steward M W. Affinity of antibody responses in man to hepatitis B vaccine determined with synthetic peptides. Lancet 1984; ii: 184–187
   Google Scholar
• Carman W F, Zanetti A R, Karayiannis P, Waters J, Manzillo G, Tanzi E, Zuckerman A J, Thomas H C. Vaccine-induced escape mutant of hepatitis B virus. Lancet 1990; 336: 325–329
   PubMed Web of Science ®Google Scholar
• Karthigesu V D, Allison L MC, Fortuin M, Mendy M, Whittle H C, Howard C R. A novel hepatitis B virus variant in the sera of immunized children. J Gen Virol 1994; 75: 443–448
   PubMed Web of Science ®Google Scholar
• Carman W F, Korula J, Wallace L, MacPhee R, Mimms L, Decker R. Fulminant reactivation of hepatitis B due to envelope protein mutant that escaped detection by monoclonal HBsAg ELISA. Lancet 1995; 345: 1406–1407
   Google Scholar
• Takada S, Kido H, Fukutomi A, Mori T, Koike K. Interaction of hepatitis B virus X protein with a serine protease, tryptase TL2 as an inhibitor. Oncogene 1994; 9: 341–438
   PubMedGoogle Scholar
• Takada S, Koike K. Three sites of the hepatitis B virus X protein cooperatively interact with cellular proteins. Virology 1994; 205: 503–510
   PubMedGoogle Scholar
• Yuh C-H, Chang Y-L, Ting L-P. Transcriptional regulation of precore and pregenomic RNAs of hepatitis B virus. J Virol 1992; 66: 4073–4084
   PubMed Web of Science ®Google Scholar
• Okamoto H, Tsuda F, Akahane Y, Sugai Y, Yoshiba M, Moriyama K, Tanaka T, Miyakawa Y, Mayumi M. Hepatitis B virus with mutations in the core promoter for an e antigen-negative phenotype in carriers with antibody to e antigen. J Virol 1994; 68: 8102–8110
   PubMed Web of Science ®Google Scholar
• Wakita T, Kakumu S, Shibata M, Yoshioka K, Ito Y, Shinagawa T, Ishikawa T, Takayanagi M, Morishima T. Detection of pre-C and core region mutants of hepatitis B virus in chronic hepatitis B virus carriers. J Clin Invest 1991; 88: 1793–1801
   PubMedGoogle Scholar
• Chuang W- L., Omata M, Ehata T, Yokosuka O, Ito Y, Imazeki F, Lu S-N, Chang W-Y, Ohto M. Precore mutations and core clustering mutations in chronic hepatitis B virus infection. Gastroenterology 1993; 104: 263–271
   PubMed Web of Science ®Google Scholar
• Carman W F, Jacyna M R, Hadziyannis S, Karayiannis P, McGarvey M J, Makris A, Thomas H C. Mutations preventing foramtion of hepatitis B e antigen in patients with chronic hepatitis B infection. Lancet 1989; ii: 588–591
   Google Scholar
• Hawkins A E, Gilson R JC, Beath S V, Boxall E H, Kelly D A, Tedder R S, Weller I VD. Novel application of a point mutation assay: evidence for transmission of hepatitis B viruses with precore mutations and their detection in infants with fulminant hepatitis B. J Med Virol 1994; 44: 13–21
   PubMedGoogle Scholar
• Alberti A, Fattovich G. Interferon therapy for the anti-HBe positive form of chronic hepatius B. Antiviral Res 1994; 24: 145–153
   PubMed Web of Science ®Google Scholar
• Tong S, Li J, Vitvitski L, Trepo C. Active hepatitis B virus replication in the presence of anti-HBe is associated with viral variants containing an inactive pre-C region. Virology 1990; 176: 596–603
   PubMed Web of Science ®Google Scholar
• Okamoto H, Yotsumoto S, Akahane Y, Yamanaka T, Miyazaki Y, Sugai Y, Tsuda F, Tanaka T, Miyakawa Y, Mayumi M. Hepatitis B viruses with precore region defects prevail in persistently infected hosts along with seroconversion to the antibody against e antigen. J Virol 1990; 64: 1298–1303
   PubMed Web of Science ®Google Scholar
• Ljunggren K, Kidd A H. Enzymatic amplification and sequence analysis of precore/core DNA in HBsAg-positive patients. J Med Virol 1991; 34: 179–183
   PubMedGoogle Scholar
• Hamasaki K, Nakata K, Nagayama Y, Ohtsuru A, Daikoku M, Taniguchi K, Tsutsumi T, Sato Y, Kato Y, Nagataki S. Changes in the prevalence of HBeAg-negative mutant hepatitis B virus during the course of chronic hepatitis B. Hepatology 1994; 20: 8–14
   PubMedGoogle Scholar
• Barbera C, Calvo P, Coscia A, Perugini L, Dastoli G, Randone A, Bonino F, Brunetto M R. Precore mutant heptitis B virus and outcome of chronic infection and hepatitis in hepatitisB e antigen-positive children. Pediatr Res 1994; 36: 347–350
   PubMed Web of Science ®Google Scholar
• Pollack J R, Ganem D. An RNA stem-loop structure directs hepatitis B virus genomic RNA encapsidation. J Virol 1993; 67: 3254–3263
   PubMedGoogle Scholar
• Fujiyama A, Miyanohara A, Nozaki C, Yoneyama T, Ohtomo N, Matsubara K. Cloning and structural analysis of hepatitis B virus DNAs, subtype adr. Nucl Acid Res 1983; 11: 4601–4610
   PubMed Web of Science ®Google Scholar