High-resolution Fluorescence In Situ Hybridization: A New Approach in Genome Mapping

References

• Tkachuk D C, Pinkel D, Kuo W L, Weier H U, Gray J W. Clinical applications of fluorescence in situ hybridization. Genet Anal Tech Appl 1991; 8: 67–74
   PubMedGoogle Scholar
• Grav J W, Pinkel D. Molecular cvtoaenetics in human cancer diagnosis. Cancer 1992; 1536–42, Suppl 69
   Google Scholar
• Gray J W, Pallavicini M G. Molecular cytogenetics: solid tumours and leukemia. Blood Cells 1993; 19: 677–83
   PubMedGoogle Scholar
• Price C M. Fluorescence in situ hybridization. Blood Rev 1993; 7: 127–34
   PubMedGoogle Scholar
• Kallioniemi A, Kallioniemi O F, Waldman F M, et al. Detection of retinoblastoma gene copy number in metaphase chromosomes and interphase nuclei by fluorescence in situ hybridization. Cytogenet Cell Genet 1992; 60: 190–3
   PubMedGoogle Scholar
• Ried T, Landes G, Dackowski W, Klinger K, Ward D C. Multicolor fluorescence in situ hybridization for the simultaneous detection of probe sets for chromosomes, 13, 18, 21, X and Y in uncultured amniotic fluid cells. Hum Mol Genet 1992; 1: 307–13
   PubMedGoogle Scholar
• Desmaze C, Scambler P, Prieur M, et al. Routine diagnosis of DiGeorge syndrome by fluorescent in situ hybridization. Hum Genet 1993; 90: 663–5
   PubMed Web of Science ®Google Scholar
• Ward B E, Gersen S L, Carelli M P, et al. Rapid prenatal diagnosis of chromosomal aneuploidies by fluorescence in situ hybridization: clinical experience with 4500 specimens. Am J Hum Genet 1993; 52: 854–65
   PubMed Web of Science ®Google Scholar
• Tkachuk D C, Westbrook C A, Andreeff M, et al. Detection of bcr-abl fusion in chronic myelogeneous leukemia by in situ hybridization. Science 1990; 250: 559–62
   PubMed Web of Science ®Google Scholar
• Bentz M, Dohner H, Cabot G, Lichter P. Fluorescence in situ hybridization in leukemias: 'the FISH are spawning'. Leukemia 1994; 8: 1447–52
   PubMed Web of Science ®Google Scholar
• Lupski J R, de Olr Slaugenhaupt S, et al. DNA duplication associated with Charcot-Marie-Tooth disease type 1A. Cell 1991; 66: 219–32
   PubMed Web of Science ®Google Scholar
• Rosenberg C, Janson M, Nordeskjold M, Borresen A L, Vianna M A. Intragenic reorganization of RB1 in a complex (4;13) rearrangement demonstrated by FISH. Cytogenet Cell Genet 1994; 65: 268–71
   PubMedGoogle Scholar
• Carter N P. Cytogenetic analysis by chromosome painting. Cyfornetry 1994; 18: 2–10
   Google Scholar
• Tucker J D, Morgan W F, Awa A A, et al. A proposed system for scoring structural aberrations detected by chromosome painting. Cytogenet Cell Genet 1995; 68: 211–21
   PubMedGoogle Scholar
• Kallioniemi A, Kallioniemi O P, Sudar D, et al. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumours. Science 1992; 258: 818–21
   PubMed Web of Science ®Google Scholar
• Kallioniemi O F, Kallioniemi A, Piper J, et al. Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumours. Genes Chromosom Cancer 1994; 10: 231–43
   PubMed Web of Science ®Google Scholar
• Kallioniemi A, Kallioniemi O F, Piper J, et al. Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridization. Proc Natl Acad Sci USA 1994; 91: 2156–60
   PubMed Web of Science ®Google Scholar
• Visakorpi T, Hyytinen E, Koivisto P, et al. ln vivo amplification of the androgen receptor gene and progression of human prostate cancer. Nat Genet 1995; 9: 401–6
   PubMed Web of Science ®Google Scholar
• Cox D R, Burmeister M, Price E R, Kim S, Myers R M. Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 1990; 250: 245–50
   PubMed Web of Science ®Google Scholar
• Lichter P, Boyle A L, Cremer T, Ward D C. Analysis of genes and chromosomes by non-isotopic in situ hybridization. Genet Anal Tech Appl 1991; 8: 24–35
   PubMedGoogle Scholar
• Trask B. Fluorescence in situ hybridization: applications in cytogenetics and gene mapping. Trends Genet 1991; 7: 149–54
   PubMed Web of Science ®Google Scholar
• Du Manoir S, Kallioniemi O-P, Lichter P, Piper J. The participants of an EC concerted action topical workshop on CGH imaging. Hardware and software requirements for quantitative analysis of comparative genomic hybridization. Cytometry 1995; 19: 1–2
   PubMedGoogle Scholar
• Pinkel D, Straume T, Gray J W. Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci USA 1986; 83: 2934–8
   PubMed Web of Science ®Google Scholar
• Nederlof P M, Robinson D, Abuknesha R, et al. Three-color fluorescence in situ hybridization for the simultaneous detection of multiple nucleic acid sequences. Cytometry 1989; 10: 20–7
   PubMedGoogle Scholar
• Nederlof P M, van der Flier S, Wiegant J, et al. Multiple fluorescence in situ hybridization. Cytometry 1990; 11: 126–31
   PubMedGoogle Scholar
• Nederlof P M, van der Flier S, Vrolijk J, Tanke H J, Raap A K. Fluorescence ratio measurements of double-labeled probes for multiple in situ hybridization by digital imaging microscopy. Cytometry 1992; 13: 839–45
   PubMedGoogle Scholar
• Lemieux N, Dutrillaux B, Viegas P E. A simple method for simultaneous R- or G-banding and fluorescence in situ hybridization of small single-copy genes. Cytogenet Cell Genet 1992; 59: 311–2
   PubMedGoogle Scholar
• Raap A K, Wiegant J, Lichter P. Multiple fluorescence in situ hybridization for molecular cytogenetics. Non-radioactive Labeling and Detection of Biomolecules, C Kessler. Springer-Verlag, Berlin 1992; 343–54
   Google Scholar
• Desmare C, Prieur M, Amblard F, et al. Physical mapping by FISH of the DiGeorge critical region (DGCR): involvement of the region in familial cases. Am J Hum Genet 1993; 53: 1239–49
   PubMedGoogle Scholar
• Phipps M E, Maher E R, Affara N A, et al. Physical mapping of chromosome 3p25-p26 by fluorescence in situ hybridisation FISH. Hum Genet 1993; 92: 18–22
   PubMedGoogle Scholar
• Heppell-Parton A C, Albertson D G, Fishpool R, Rabbitts P H. Multicolour fluorescence in situ hybridisation to order small, single-copy probes on metaphase chromosomes. Cytogenet Cell Genet 1994; 66: 42–7
   PubMedGoogle Scholar
• Landegent J E, Jansenin de Wal N, van Ommen G, et al. Chromosomal localization of a unique gene by non-autoradiographic in situ hybridization. Nature 1985; 317: 175–7
   PubMed Web of Science ®Google Scholar
• Lichter P, Tang C J, Call K, et al. High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 1990; 247: 64–9
   PubMed Web of Science ®Google Scholar
• Tewilliger J D, Ott J. Handbook of Human Genetic Linkage. Johns Hopkins, Baltimore 1994
   Google Scholar
• Trask B, Pinkel D, van den Engh G. The proximity of DNA sequences in interphase cell nuclei is correlated to genomic distance and permits ordering of cosmids spanning 250 kilobase pairs. Genomics 1989; 5: 710–7
   PubMed Web of Science ®Google Scholar
• Yokota H, van den Engh G, Mostert M, Trask B J. Treatment of cells with alkaline borate buffer extends the capability of interphase FISH mapping. Genomics 1995; 25: 485–91
   PubMed Web of Science ®Google Scholar
• Bigger T R, Savage J R. Mapping G-bands on human prophase chromosomes. Cytogenet Cell Genet 1975; 15: 112–21
   PubMedGoogle Scholar
• Yunis J J. High resolution of human chromosomes. Science 1976; 191: 1268–70
   PubMed Web of Science ®Google Scholar
• Sawyer J R. High resolution mid-prophase human chromosomes induced by echinomycin and ethidium bromide. Hum Genet 1995; 95: 49–55
   PubMedGoogle Scholar
• Yunis J J, Sawyer J R, Ball D W. The characterization of high-resolution G-banded chromosomes of man. Chromosoma 1978; 67: 293–307
   PubMed Web of Science ®Google Scholar
• Lawrence J B, Singer R H, McNeil J A. Interphase and metaphase resolution of different distances within the human dystrophin gene. Science 1990; 249: 928–32
   PubMedGoogle Scholar
• Inazawa J, Ariyama T, Tokino T, Tanigami A, Nakamura Y, Abe T. High resolution ordering of DNA markers by multi-color fluorescent in situ hybridization of prophase chromosomes. Cylogenet Cell Genet 1994; 65: 130–5
   PubMedGoogle Scholar
• Ariyama T, Kimura T, Yamakawa K, Nakamura Y, Abe T, Inazawa J. Precise ordering of 26 cosmid markers on chromosome region 3p23-p21.3 by two color FISH on human prophase chromosomes and stretched DNAs. Cytogenet Cell Genet 1995; 70: 129–33
   PubMedGoogle Scholar
• Haaf T, Ward D C. Structural analysis of alpha-satellite DNA and centromere proteins using extended chromatin and chromosomes. Hum Mol Genet 1994; 3: 697–709
   PubMed Web of Science ®Google Scholar
• Haaf T, Ward D C. High-resolution ordering of YAC contigs using extended chromitin and chromosomes. Hum Mol Genet 1994; 3: 629–33
   PubMed Web of Science ®Google Scholar
• Laan M, Kallioniemi O-P, Hellsten E, Alitalo K, Peltonen L, Palotie A. Mechanically stretched chromosomes as targets for high resolution FISH mapping. Genome Res 1995; 5: 13–20
   PubMed Web of Science ®Google Scholar
• Wiegant J, Kalle W, Mullenders L, et al. High-resolution in situ hybridization using DNA halo preparations. Hum Mol Genet 1992; 1: 587–91
   PubMed Web of Science ®Google Scholar
• Heng H H, Squire J, Tsui L C. High-resolution mapping of mammalian genes by in situ hybridization to free chromatin. Proc Natl Acad Sci USA 1992; 89: 9509–13
   PubMed Web of Science ®Google Scholar
• Fidlerova H, Senger G, Kost M, Sanseau P, Sheer D. Two simple procedures for releasing chromatin from routinely fixed cells for fluorescence in situ hybridization. Cytogenet Cell Genet 1994; 65: 203–5
   PubMedGoogle Scholar
• Parra I, Windle B. High resolution visual mapping of stretched DNA by fluorescent hybridization. Nat Genet 1993; 5: 17–21
   PubMed Web of Science ®Google Scholar
• Houseal T W, Dackowski W R, Landes G M, Klinger K W. High resolution mapping of overlapping cosmids by fluorescence in situ hybridization. Cytometry 1994; 15: 193–8
   PubMedGoogle Scholar
• Florijn R J, Bonden L AJ, Vrolijk H, et al. High resolution DNA fiber-FISH for genomic DNA mapping and color bar-coding of large genes. Hum Mol Genet 1995; 4: 831–6
   PubMed Web of Science ®Google Scholar
• Heiskanen M, Karhu R, Hellsten E, Peltonen L, Kallioniemi O P, Palotie A. High resolution mapping using fluorescence in situ hybridization to extended DNA fibers prepared from agarose-embedded cells. Biotechniques 1994; 17: 928–9
   PubMedGoogle Scholar
• Heiskanen M, Hellsten E, Kallioniemi O-P, et al. Visual mapping by fiber FISH. Genomics 1995; 30: 31–6
   PubMedGoogle Scholar