390
Views
12
CrossRef citations to date
0
Altmetric
Research Article

Survival and SOS response induction in ultraviolet B irradiated Escherichia coli cells with defective repair mechanisms

, , , &
Pages 321-328 | Received 22 Feb 2015, Accepted 26 Jan 2016, Published online: 11 Mar 2016

References

  • Almeida E, Fuentes JL, Sánchez A, Carro S, Prieto E 2004. Efecto de la radiación gamma sobre la supervivencia y la inducción de la respuesta SOS en células de Escherichia coli deficientes en la reparación por escisión de nucleótidos y por recombinación. Rev Cubana Invest Biomed 83:5558–5562.
  • Anderson DG, Kowalczykowski SC. 1998. Reconstitution of an SOS response pathway: Derepression of transcription in response to DNA breaks. Cell 95:975–979.
  • Bagg E, Kenyon CJ, Walker GC. 1981. Inducibility of a gene product required for UV and chemical mutagenesis in Escherichia coli. PNAS 78:5749–5753.
  • Beehler BC, Przybyszewski J, Box HB, Kulesz-Martin MF. 1992. Formation of 8-hydroxydeoxyguanosine within DNA of mouse keratinocytes exposed in culture to UVB and H2O2. Carcinogenesis 13:2003–2007.
  • Bochner BR, Huang HC, Schieven GL, Ames BN. 1980. Positive selection for loss of tetracycline resistance. J Bacteriol 143:926–933.
  • Breña-Valle M, Serment-Guerrero J. 1998. SOS induction by gamma-radiation in Escherichia coli strains defective in repair and/or recombination mechanisms. Mutagenesis 13:637–641.
  • Breyer WA, Matthews BW. 2000. Structure of Escherichia coli exonuclease I suggests how processivity is achieved. Nature Struct Biol 7:1125–1128.
  • Cadet J, Sage E, Douki T. 2005. Ultraviolet radiation-mediated damage to cellular DNA. Mutat Res 571: 3–17.
  • Casadaban M, Cohen S. 1979. Lactose gene fused to an exogenous promoter in one step using a Muc-Lac bacterophage: In vivo probe for transcriptional control sequence. PNAS 76:4530–4533.
  • Chandrasekhar D, Van Houten B. 2000. In vivo formation and repair of cyclobutane pyrimidine dimmers and 6–4 photoproducts measured at the gene and nucleotide level in Escherichia coli. Mutat Res 450:19–40.
  • Chow KH, Courcelle J. 2004. RecO acts with RecF and RecR to protect and maintain replication forks blocked by UV-induced DNA damage in Escherichia coli. J Biol Chem 279:3492–3496.
  • Chow KH, Courcelle J. 2007. RecBCD and RecJ/RecQ initiate DNA degradation on distinct substrates in UV-irradiated Escherichia coli. Radiat Res 168:499–506.
  • Corrette-Bennett SE, Lovett ST. 1995. Enhancement of RecA strand-transfer activity by RecJ exonuclease of Escherichia coli. J Biol Chem 270:6881–6885.
  • Courcelle J, Crowley DV, Hanawalt PC. 1999. Recovery of DNA replication in UV-irradiated Escherichia coli requires both excision repair and RecF protein function. J Bacteriol 181:916–922.
  • Courcelle J, Hanawalt PC. 1999. RecQ and RecJ process blocked replication forks prior to the resumption of replication in UV-irradiated Escherichia coli. Mol Gen Genet 262:543–551.
  • Courcelle J, Hanawalt PC. 2001. Participation of recombination proteins in rescue of arrested replication forks in UV-irradiated Escherichia coli need not involve recombination. PNAS 98:8196–8202.
  • Courcelle J, Donaldson JR, Chow KH, Courcelle CT. 2003. DNA damage-induced replication fork regression and processing in Escherichia coli. Science 299:1064–1067.
  • Courcelle J, Hanawalt PC. 2003. RecA-dependent recovery of arrested DNA replication forks. Annu Rev Genet 37:611–646.
  • Courcelle CT, Chow KH, Casey A, Courcelle J. 2006. Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coli. PNAS 103:9154–9159.
  • Courdavault S, Baudouin C, Charveron M, Canguilhem B, Favier A, Cadet J, Douki T. 2005. Repair of the three main types of bipyrimidine DNA photoproducts in human keratinocytes exposed to UVB and UVA radiations. DNA Repair 4:836–844.
  • Ðermić D. 2006. Functions of multiple exonucleases are essential for cell viability, DNA repair and homologous recombination in recD mutants of Escherichia coli. Genetics 172:2057–2069.
  • Dillingham MS, Kowalczykowski SC. 2008. RecBCD enzyme and the repair of double-stranded DNA breaks. Microbiol Mol Biol R 72:642–671.
  • Finch PW, Chambers P, Emmerson PT. 1985. Identification of the Escherichia coli recN gene product as a major SOS protein. J Bacteriol 164:653–658.
  • Fogliano M, Schendel PF. 1981. Evidence for the inducibility of the uvrB operon. Nature 289:196–198.
  • Goerlich O, Quillardet P, Hofnung M. 1989. Induction of the SOS response by hydrogen peroxide in various Escherichia coli mutants with altered protection against oxidative DNA damage. J Bacteriol 171: 6141–6147.
  • Hegde S, Sandler SJ, Clark AJ, Madiraju MV. 1995. recO and recR mutations delay induction of the SOS response in Escherichia coli. Mol Gen Genet 246:254–258.
  • Higashitani N, Higashitani A, Horiuchi K. 1995. SOS induction in Escherichia coli by single-stranded DNA of mutant filamentous phage: Monitoring by cleavage of LexA repressor. J Bacteriol 177:3610–3612.
  • Hishida T, Han YW, Shibata T, Kubota Y, Ishino Y, Iwasaki H, Shinagawa H. 2004. Role of the Escherichia coli RecQ DNA helicase in SOS signaling and genome stabilization at stalled replication forks. Genes Dev 18:1886–1897.
  • Huisman O, D’Ari R. 1981. An inducible DNA replication-cell division coupling mechanism in Escherichia coli. Nature 290:797–799.
  • Huisman O, D’Ari R, Gottesman S. 1984. Cell-division control in Escherichia coli: Specific induction of the SOS function SfiA protein is sufficient to block the septation. PNAS 81:4490–4494.
  • Keller KL, Overbeck-Carrick TL, Beck DJ. 2001. Survival and induction of SOS in Escherichia coli treated with cisplatin, UV-irradiation, or mitomycin C are dependent on the function of the RecBC and RecFOR pathways of homologous recombination. Mutat Res 486:21–29.
  • Kenyon CJ, Walker GC. 1981. Expression of the Escherichia coli uvrA gene is inducible. Nature 289:808–810.
  • Keyamura K, Sakaguchi C, Kubota Y, Niki H, Hishida T. 2013. RecA recruits SMC-like RecN to DNA double-strand breaks. J Biol Chem 288:29229–29237.
  • Khan SR, Kuzminov A. 2012. Replication forks stalled at ultraviolet lesions are rescued via RecA and RuvABC protein-catalyzed disintegration in Escherichia coli. J Biol Chem 287:6250–6265.
  • Khanin R, Vinciotti V, Wit E. 2006. Reconstructing repressor protein levels from expression of gene targets in Escherichia coli. PNAS 103: 18592–18596.
  • Kisker C, Kuper J, Van Houten B. 2013. Prokaryotic nucleotide excision repair. Cold Spring Harb Perspect Biol 5:a012591.
  • Kneuttinger AC, Kashiwazaki G, Prill S, Heil K, Müller M, Carell T. 2014. Formation and direct repair of UV-induced dimeric DNA pyrimidine lesions. Photochem Photobiol 90:1–14.
  • Kolodner R, Fishel RA, Howard M. 1985. Genetic recombination of bacterial plasmid DNA: Effect of RecF pathway mutations on plasmid recombination in Escherichia coli. J Bacteriol 163:1060–1066.
  • Lea CS, Scotto JA, Buffler PA, Fine J, Barnhill RL, Berwick M. 2007. Ambient UVB and melanoma risk in the United States: A case-control analysis. Ann Epidemiol 17:447–453.
  • Lewis LK, Harlow GR, Gregg-Jolly LA, Mount DW. 1994. Identification of high affinity binding sites for LexA which define new DNA damage-inducible genes in Escherichia coli. J Mol Biol 241:507–523.
  • Little JW, Mount DW. 1982. The SOS regulatory system of Escherichia coli. Cell 29:11–22.
  • Lovet ST, Kolodner RD. 1989. Identification and purification of a single-stranded-DNA-specific exonuclease encoded by the recJ gene of Escherichia coli. PNAS 86:2627–2631.
  • Matsumura Y, Ananthaswamy HN. 2004. Toxic effects of ultraviolet radiation on the skin. Toxicol Appl Pharmacol 195:298–308.
  • Meddows TR, Savory AP, Grove JI, Moore T, Lloyd RG. 2005. RecN protein and transcription factor DksA combine to promote faithful recombinational repair of DNA double-strand breaks. Mol Microbiol 57:97–110.
  • Mitchell DL, Greinert R, de Gruijl FR, Guikers KLH, Breitbart EW, Byrom M, Gallmeier MM, Lowery MG, Volkmer B. 1999. Effects of chronic low-dose ultraviolet B radiation on DNA damage and repair in mouse skin. Cancer Res 59:2875–2884.
  • Morrison PT, Lovett ST, Gilson LE, Kolodner R. 1989. Molecular analysis of the Escherichia coli recO gene. J Bacteriol 171:3641–3649.
  • Odsbu I, Skarstad K. 2014. DNA compaction in the early part of the SOS response is dependent on RecN and RecA. Microbiology 160:872–882.
  • Pellegrino S, Radzimanowski J, de Sanctis D, Erba EB, McSweeney S, Timmins J. 2012. Structural and functional characterization of an SMC-like protein RecN: New insights into double-strand break repair. Structure 20:2076–2089.
  • Picksley SM, Attfield PV, Lloyd RG. 1984. Repair of DNA double-strand breaks in Escherichia coli K12 requires a functional recN product. Mol Gen Genet 195:267–274.
  • Portakal O, Doğan P. 2008. Construction of recB-recD genetic fusion and functional analysis of RecBDC fusion enzyme in Escherichia coli. BMC Biochemistry 9:27.
  • Quillardet P, Hofnung, M. 1984. Induction by UV light of the SOS funtion sfiA in Escherichia coli strains deficient or proficient in excision repair. J Bacteriol 157:35–38.
  • Quillardet P, Hofnung M. 1985. The SOS chromotest, a colorimetric bacterial assay for genotoxins: Procedures. Mutat Res 147:65–78.
  • Quillardet P, Rouffaud MA, Bouige, P. 2003. DNA array analysis of gene expression in response to UV irradiation in Escherichia coli. Res Microbiol 154:559–572.
  • Quintero N, Stashenko EE, Fuentes JL. 2012. The influence of organic solvents on estimates of genotoxicity and antigenotoxicity in the SOS chromotest. Genet Mol Biol 35:503–514.
  • R Core Team. 2013. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: http://www.R-project.org.
  • Sancar A, Rupp WD. 1983. A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region. Cell 33:249–260.
  • Schuch AP, Galhardo RDS, de Lima-Bessa KM, Schuch NJ, Menck CFM. 2009. Development of a DNA-dosimeter system for monitoring the effects of solar-ultraviolet radiation. Photochem Photobiol Sci 8:111–120.
  • Schuch AP, Menck CFM. 2010. The genotoxic effects of DNA lesions induced by artificial UV-radiation and sunlight. J Photochem Photobiol B: Biol 99:111–116.
  • Schuch AP, Machado-Garcia CC, Makita K, Menck CFM. 2013. DNA damage as a biological sensor for environmental sunlight. Photochem Photobiol Sci 12:1259–1272.
  • Serment-Guerrero J, Breña-Valle M, Espinosa-Aguirre JJ. 2008. In vivo role of Escherichia coli single-strand exonucleases in SOS induction by gamma radiation. Mutagenesis 23:317–323.
  • Taylor AF, Smith GR. 2003. RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity. Nature 423:889–893.
  • Thoms B, Wackernagel W. 1987. Regulatory role of recF in the SOS response of Escherichia coli: Impaired induction of SOS genes by UV irradiation and nalidixic acid in a recF mutant. J Bacteriol 169: 1731–1736.
  • Thoms B, Wackernagel W. 1988. Suppression of the UV-Sensitive phenotype of Escherichia coli recF mutants by recA(Srf) and recA(Tif) mutations requires recJ+. J Bacteriol 170:3675–3681.
  • Thoms B, Wackernagel W. 1998. Interaction of RecBCD enzyme with DNA at double-strand breaks produced in UV-irradiated Escherichia coli: Requirement for DNA end processing. J Bacteriol 180:5639–5645.
  • Thoms B, Borchers I, Wackernagel W. 2008. Effects of single-strand DNases ExoI, RecJ, ExoVII, and SbcCD on homologous recombination of recBCD + strains of Escherichia coli and roles of SbcB15 and XonA2 ExoI mutant enzymes. J Bacteriol 190:179–192.
  • Umezu K, Chi NW, Kolodner RD. 1993. Biochemical interaction of the Escherichia coli RecF, RecO, and RecR proteins with RecA protein and single-stranded DNA binding protein. PNAS 90:3875–3879.
  • Viswanathan M, Lovett ST. 1998. Single-strand DNA-specific exonucleases in Escherichia coli. Roles in repair and mutation avoidance. Genetics 149:7–16.
  • Vlašić I, Šimatović A, Brčić-Kostić K. 2011. Genetic requirements for high constitutive SOS expression in recA730 mutants of Escherichia coli. J Bacteriol 193:4643–4651.
  • Wang TC, Smith KC. 1983. Mechanisms for recF-dependent and recB-dependent pathways of postreplication repair in UV-irradiated Escherichia coli uvrB. J. Bacteriol 156:1093–1098.
  • Whitby MC, Lloyd RG. 1995. Altered SOS induction associated with mutations in recF, recO and recR. Mol Gen Genet 246:174–179.
  • Witkin EM. 1976. Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. Bacteriolog Rev 40:869–907.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.