Channel properties of the translocator domain of the autotransporter Hbp of Escherichia coli

References

• Barnard TJ, Dautin N, Lukacic P, Bernstein HD, Buchanan SK. 2007. Autotransporter structure reveals intra-barrel cleavage followed by conformational changes. Nat Struct Mol Biol 14:1214–1220.
   PubMedGoogle Scholar
• Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT. 2005. Protein structure prediction servers at University College London. Nucl Acids Res 33(Web Server issue): W36–38. Available from: http://bioinf.cs.ucl.ac.uk/psipred/.
   Google Scholar
• Dautin N, Bernstein HD. 2007. Protein secretion in Gram-negative bacteria via the autotransporter pathway. Annu Rev Microbiol 61:89–112.
   PubMed Web of Science ®Google Scholar
• Dautin N, Barnard TJ, Anderson DE, Bernstein HD. 2007. Cleavage of a bacterial autotransporter by an evolutionarily convergent autocatalytic mechanism. EMBO J 26:1942–1952.
   PubMed Web of Science ®Google Scholar
• Dé E, Saint N, Glinel K, Meli AC, Levy D, Jacob-Dubuisson F. 2008. Influence of the passenger domain of a model autotransporter on the properties of its translocator domain. Mol Membr Biol, 25, 192–202.
   PubMedGoogle Scholar
• Emsley P, Charles IG, Fairweather NF, Isaacs NW. 1996. Structure of Bordetella pertussis virulence factor P.69 pertactin. Nature 381:90–92.
   PubMed Web of Science ®Google Scholar
• Ieva R, Skillman KM, Bernstein HD. 2008. Incorporation of a polypeptide segment into the β-domain pore during the assembly of a bacterial autotransporter. Mol Microbiol 67:188–201.
   PubMedGoogle Scholar
• Jansen C, Wiese A, Reubsaet L, Dekker N, de Cock H, Seydel U, Tommassen J. 2000. Biochemical and biophysical characterization of in vitro folded outer membrane porin PorA of Neisseria meningitidis. Biochim Biophys Acta 1464:284–298.
   PubMed Web of Science ®Google Scholar
• Jong WSP, ten Hagen-Jongman CM, den Blaauwen T, Slotboom DJ, Tame JRH, Wickström D, de Gier JW, Otto BR, Luirink J. 2007. Limited tolerance towards folded elements during secretion of the autotransporter Hbp. Mol Microbiol 63:1524–1536.
   PubMedGoogle Scholar
• Khalid S, Sansom MS. 2006. Molecular dynamics simulations of a bacterial autotransporter: NalP from Neisseria meningitidis. Mol Membr Biol 23:499–508.
   PubMed Web of Science ®Google Scholar
• Klauser T, Kramer J, Otzelberger K, Pohlner J, Meyer TF. 1993. Characterization of the Neisseria Iga β-core. The essential unit for outer membrane targeting and extracellular protein secretion. J Mol Biol 234:579–593.
   PubMedGoogle Scholar
• Nakamura K, Mizushima S. 1976. Effects of heating in dodecyl sulfate solution on the conformation and electrophoretic mobility of isolated major outer membrane proteins from Escherichia coli K-12. J Biochem 80:1411–1422.
   PubMed Web of Science ®Google Scholar
• Nikaido H, Nikaido K, Harayama S. 1991. Identification and characterization of porins in Pseudomonas aeruginosa. J Biol Chem 266:770–779.
   PubMed Web of Science ®Google Scholar
• Nikaido H. 2003. Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev 67:593-656.
   PubMed Web of Science ®Google Scholar
• Oomen CJ, van Ulsen P, Van Gelder P, Feijen M, Tommassen J, Gros P. 2004. Structure of the translocator domain of a bacterial autotransporter. EMBO J 23:1257–1266.
   PubMed Web of Science ®Google Scholar
• Otto BR, van Dooren SSJ, Nuijens JH, Luirink J, Oudega B. 1998. Characterization of a hemoglobin protease secreted by the pathogenic Escherichia coli strain EB1. J Exp Med 188:1091–1103.
   PubMed Web of Science ®Google Scholar
• Otto BR, van Dooren SJ, Dozois CM, Luirink J, Oudega B. 2002. Escherichia coli hemoglobin protease autotransporter contributes to synergistic abscess formation and heme-dependent growth of Bacteroides fragilis. Infect Immun 70:5–10.
   PubMed Web of Science ®Google Scholar
• Otto BR, Sijbrandi R, Luirink J, Oudega B, Heddle JG, Mizutani K, Park SY, Tame JRH. 2005. Crystal structure of hemoglobin protease, a heme binding autotransporter protein from Escherichia coli. J Biol Chem 280:17339–17345.
   PubMed Web of Science ®Google Scholar
• Pace CN, Scholtz JM. 1997. Measuring the conformational stability of a protein. In: Creighton TE, editor. Protein structure: A practical approach. 2nd ed. New York: Oxford University Press. pp 302–324.
   Google Scholar
• Perez-Iratxeta C, Andrade-Navarro MA. 2008. K2D2: Estimation of protein secondary structure from circular dichroism spectra. BMC Struct Biol 8:25. Available from http://www.embl.de/∼andrade/k2d/.
   Google Scholar
• Pohlner J, Halter R, Beyreuther K, Meyer TF. 1987. Gene structure and extracellular secretion of Neisseria gonorrhoeae IgA protease. Nature 325:458–462.
   PubMed Web of Science ®Google Scholar
• Rutten L, Mannie JP, Stead CM, Raetz CRH, Reynolds CM, Bonvin AM, Tommassen JP, Egmond MR, Trent MS, Gros P. 2009. Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium. Proc Natl Acad Sci USA 106:1960–1964.
   PubMedGoogle Scholar
• Sauri A, Soprova Z, Wickström D, de Gier JW, Van der Schors RC, Smit AB, Jong WSP, Luirink J. 2009. The Bam (Omp85) complex is involved in secretion of the autotransporter haemoglobin protease. Microbiology 155:3982–3991.
   PubMed Web of Science ®Google Scholar
• Sen K, Hellman J, Nikaido H. 1988. Porin channels in intact cells of Escherichia coli are not affected by Donnan potentials across the outer membrane. J Biol Chem 263:1182–1187.
   PubMedGoogle Scholar
• Shannon JL, Fernandez RC. 1999. The C-terminal domain of the Bordetella pertussis autotransporter BrkA forms a pore in lipid bilayer membranes. J Bacteriol 181:5838–5842.
   PubMedGoogle Scholar
• Stock JB, Rauch B, Roseman S. 1977. Periplasmic space in Salmonella typhimurium and Escherichia coli. J Biol Chem 252:7850–7861.
   PubMed Web of Science ®Google Scholar
• Studier FW, Rosenberg AH, Dunn JJ, Dubbendorff JW. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185:60–89.
   PubMed Web of Science ®Google Scholar
• Tajima N, Kawai F, Park SY, Tame JRH. 2010. A novel intein-like autoproteolytic mechanism in autotransporter proteins. J Mol Biol 402:645–656.
   PubMedGoogle Scholar
• Van Gelder P, Dumas F, Rosenbusch JP, Winterhalter M. 2000. Oriented channels reveal asymmetric energy barriers for sugar translocation through maltoporin of Escherichia coli. Eur J Biochem 267:79–84.
   PubMedGoogle Scholar
• van Ulsen P, van Alphen L, ten Hove J, Fransen F, van der Ley P, Tommassen J. 2003. A Neisserial autotransporter NalP modulating the processing of other autotransporters. Mol Microbiol 50:1017–1030.
   PubMed Web of Science ®Google Scholar
• Veiga E, Sugawara E, Nikaido H, de Lorenzo V, Fernadez LA. 2002. Export of autotransported proteins proceeds through an oligomeric ring shaped by C-terminal domains. EMBO J 21:2122–2131.
   PubMed Web of Science ®Google Scholar