Dynamic efficiency of the human intestinal microbiota

References

• Armougom F, Henry M, Vialettes B, et al. (2009). Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients. PLoS One 4:e7125
   PubMed Web of Science ®Google Scholar
• Arrow KJ, Debreu G. (1954). Existence of an equilibrium for a competitive economy. Econometrica 22:265–90
   Web of Science ®Google Scholar
• Atarashi K, Tanoue T, Shima T, et al. (2011). Induction of colonic regulatory T cells by indigenous Clostridium species. Science 331:337–41
   PubMed Web of Science ®Google Scholar
• Benezra A, DeStefano J, Gordon JI. (2012). Anthropology of microbes. Proc Natl Acad Sci USA 109:6378–81
   PubMed Web of Science ®Google Scholar
• Bisgaard H, Li N, Bonnelykke K, et al. (2011). Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age. J Allergy Clin Immunol 128:646–52
   PubMed Web of Science ®Google Scholar
• Candela M, Biagi E, Maccaferri S, et al. (2012). Intestinal microbiota is a plastic factor responding to environmental changes. Trends Microbiol 20:385–91
   PubMed Web of Science ®Google Scholar
• Caporaso JG, Lauber CL, Costello EK, et al. (2011). Moving pictures of the human microbiome. Genome Biol 12:R50
   PubMed Web of Science ®Google Scholar
• Clemente JC, Ursell LK, Parfrey LW, Knight R. (2012). The impact of the gut microbiota on human health: an integrative view. Cell 148:1258–70
   PubMed Web of Science ®Google Scholar
• Collins SM, Surette M, Bercik P. (2012). The interplay between the intestinal microbiota and the brain. Nat Rev Microbiol 10:735–42
   PubMed Web of Science ®Google Scholar
• Costello EK, Stagaman K, Dethlefsen L, et al. (2012). The application of ecological theory toward an understanding of the human microbiome. Science 336:1255–62
   PubMed Web of Science ®Google Scholar
• De Filippo C, Cavalieri D, Di Paola M, et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107:14691–6
   PubMed Web of Science ®Google Scholar
• Dethlefsen L, Eckburg PB, Bik EM, Relman DA. (2006). Assembly of the human intestinal microbiota. Trends Ecol Evol 21:517–23
   PubMed Web of Science ®Google Scholar
• Di Cianni G, Miccoli R, Volpe L, et al. (2003). Intermediate metabolism in normal pregnancy and in gestational diabetes. Diabetes Metab Res Rev 19:259–70
   PubMed Web of Science ®Google Scholar
• Diamond P. (1965). National debt in a neoclassical growth model. Am Econ Rev 55:1126–50
   Web of Science ®Google Scholar
• Diaz Heijtz R, Wang S, Anuar F, et al. (2011). Normal gut microbiota modulates brain development and behavior. Proc Natl Acad Sci USA 108:3047–52
   PubMed Web of Science ®Google Scholar
• Dominguez-Bello MG, Blaser MJ, Ley RE, Knight R. (2011). Development of the human gastrointestinal microbiota and insights from high-throughput sequencing. Gastroenterology 140:1713–9
   PubMed Web of Science ®Google Scholar
• Fanning S, Hall LJ, Cronin M, et al. (2012). Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci USA 109:2108–13
   PubMed Web of Science ®Google Scholar
• Fukuda S, Toh H, Hase K, et al. (2011). Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 469:543–7
   PubMed Web of Science ®Google Scholar
• Gill SR, Pop M, Deboy RT, et al. (2006). Metagenomic analysis of the human distal gut microbiome. Science 312:1355–9
   PubMed Web of Science ®Google Scholar
• Greenblum S, Turnbaugh PJ, Borenstein E. (2012). Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci USA 109:594–9
   PubMed Web of Science ®Google Scholar
• Holmes E, Li JV, Marchesi JR, Nicholson JK. (2012). Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab 16:559–64
   PubMed Web of Science ®Google Scholar
• Hooper LV, Littman DR, Macpherson AJ. (2012). Interactions between the microbiota and the immune system. Science 336:1268–73
   PubMed Web of Science ®Google Scholar
• Human Microbiome Project Consortium. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486:207–14
   PubMed Web of Science ®Google Scholar
• Johnson CL, Versalovic J. (2012). The human microbiome and its potential importance to pediatrics. Pediatrics 129:950–60
   PubMed Web of Science ®Google Scholar
• Jost T, Lacroix C, Braegger CP, Chassard C. (2012). New insights in gut microbiota establishment in healthy breast fed neonates. PLoS One 7:e44595
   PubMed Web of Science ®Google Scholar
• Kau AL, Ahern PP, Griffin NW, et al. (2011). Human nutrition, the gut microbiome and the immune system. Nature 474:327–36
   PubMed Web of Science ®Google Scholar
• Koenig JE, Spor A, Scalfone N, et al. (2011). Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci USA 108:4578–85
   PubMed Web of Science ®Google Scholar
• Koren O, Goodrich JK, Cullender TC, et al. (2012). Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell 150:470–80
   PubMed Web of Science ®Google Scholar
• Koropatkin NM, Cameron EA, Martens EC. (2012). How glycan metabolism shapes the human gut microbiota. Nat Rev Microbiol 10:323–35
   PubMed Web of Science ®Google Scholar
• Kurokawa K, Itoh T, Kuwahara T, et al. (2007). Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 14:169–81
   PubMed Web of Science ®Google Scholar
• Leonard WR, Snodgrass JJ, Robertson ML. (2007). Effects of brain evolution on human nutrition and metabolism. Annu Rev Nutr 27:311–27
   PubMedGoogle Scholar
• Lepage P, Leclerc MC, Joossens M, et al. (2013). A metagenomic insight into our gut's microbiome. Gut 62:146–58
   PubMed Web of Science ®Google Scholar
• Lozupone CA, Stombaugh JI, Gordon JI, et al. (2012). Diversity, stability and resilience of the human gut microbiota. Nature 489:220–30
   PubMed Web of Science ®Google Scholar
• Lupp C, Robertson ML, Wickham ME, et al. (2007). Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae. Cell Host Microbe 2:204
   PubMed Web of Science ®Google Scholar
• Maynard CL, Elson CO, Hatton RD, Weaver CT. (2012). Reciprocal interactions of the intestinal microbiota and immune system. Nature 489:231–41
   PubMed Web of Science ®Google Scholar
• McNulty NP, Yatsunenko T, Hsiao A, et al. (2011). The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Transl Med 3:106ra106
   PubMed Web of Science ®Google Scholar
• Muegge BD, Kuczynski J, Knights D, et al. (2011). Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332:970–4
   PubMed Web of Science ®Google Scholar
• Nam YD, Jung MJ, Roh SW, et al. (2011). Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS One 6:e22109
   PubMed Web of Science ®Google Scholar
• Neish AS. (2009). Microbes in gastrointestinal health and disease. Gastroenterology 136:65–80
   PubMed Web of Science ®Google Scholar
• Neufeld KM, Kang N, Bienenstock J, Foster JA. (2011). Reduced anxiety-like behavior and central neurochemical change in germ-free mice. Neurogastroenterol Motil 23:255–64
   PubMed Web of Science ®Google Scholar
• Nicholson JK, Holmes E, Kinross J, et al. (2012). Host-gut microbiota metabolic interactions. Science 336:1262–7
   PubMed Web of Science ®Google Scholar
• Olszak T, An D, Zeissig S, et al. (2012). Microbial exposure during early life has persistent effects on natural killer T cell function. Science 336:489–93
   PubMed Web of Science ®Google Scholar
• Palmer C, Bik EM, DiGiulio DB, et al. (2007). Development of the human infant intestinal microbiota. PLoS Biol 5:1556–73
   Web of Science ®Google Scholar
• Pareto V. (1911). Economie Mathematique. Paris: Gauthier-Villars
   Google Scholar
• Phelps ES. (1961). The golden rule of accumulation: a fable for growthmen. Am Econ Rev 51:638–43
   Web of Science ®Google Scholar
• Qin J, Li R, Raes J, et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464:59–65
   PubMed Web of Science ®Google Scholar
• Round JL, Mazmanian SK. (2009). The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol 9:313–23
   PubMed Web of Science ®Google Scholar
• Schumpeter J. (1942). Capitalism, Socialism and Democracy. London: Routledge
   Google Scholar
• Schwartz S, Friedberg I, Ivanov IV, et al. (2012). A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response. Genome Biol 13:r32
   PubMed Web of Science ®Google Scholar
• Smith MI, Yatsunenko T, Manary MJ, et al. (2013). Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science 339:548–54
   PubMed Web of Science ®Google Scholar
• Solow R. (1987). We’d better watch out. New York Times Book Review, 12, 36
   Google Scholar
• Tremaroli V, Bäckhed F. (2012). Functional interactions between the gut microbiota and host metabolism. Nature 489:242–9
   PubMed Web of Science ®Google Scholar
• Turnbaugh PJ, Ley RE, Hamady M, et al. (2007). The human microbiome project. Nature 449:804–10
   PubMed Web of Science ®Google Scholar
• Turroni F, Peano C, Pass DA, et al. (2012). Diversity of bifidobacteria within the infant gut microbiota. PLoS One 7:e36957
   PubMed Web of Science ®Google Scholar
• Ventura M, Turroni F, Motherway MO, et al. (2012). Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol 20:467–76
   Web of Science ®Google Scholar
• Walker AW, Ince J, Duncan SH, et al. (2011). Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J 5:220–30
   PubMed Web of Science ®Google Scholar
• Wu GD, Chen J, Hoffmann C, et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334:105–8
   PubMed Web of Science ®Google Scholar
• Yatsunenko T, Rey FE, Manary MJ, et al. (2012). Human gut microbiome viewed across age and geography. Nature 486:222–7
   PubMed Web of Science ®Google Scholar