Cloning of Genes Participating in Aerobic Biodegradation of p-Cumate from Rhodopseudomonas palustris

References

• Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 1990; 215: 403410.
   Web of Science ®Google Scholar
• Benson D., Lipman D. J., Ostell J. GenBank. Nucleic Acids Res. 1993; 21: 2963–2965
   PubMed Web of Science ®Google Scholar
• Boronin A. M., Tsoi T. V., Kosheleva I. A., Arinbasarov M. U., Adanin V. M. Cloning of Pseudomonas putida genes responsible for the primary stages of oxidation of naphthalene in. Escherichia coli. Genetika 1989; 25: 226–237
   Google Scholar
• Brenner V., Inui M., Nunoura N., Momma K., Yukawa H. Studies on CO2 fixation in PNSB: utilization of waste as the additional source of carbon for CO2 fixation by PNSB. Advances in Chemical Conversions for Mitigating Carbon Dioxide. Studies in Surface Science and Catalysis, T. Inui, M. Anpo, K. Izui, S. Yan-agicla, T. Yamaguchi. Elsevier Science B.V., Netherlands 1998; Vol. 114: 593–596
   Google Scholar
• Dagley S. Biochemistry of aromatic hydrocarbon degradation in pseudomonas. The bacteria, vol. 10. The Biology of Pseudomonas, J. R. Sokatch. Academic Press, New York 1986; 527–555
   Google Scholar
• Eaton R. W. p-Cumate catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA carrying the cmt operon. J. Bacteriol. 1996; 178: 1351–1362
   PubMed Web of Science ®Google Scholar
• Eaton R. W. p-Cymene catabolic pathway in Pseu-domonas putida F1: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J. Bacteriol. 1997; 179: 3171–3180
   PubMed Web of Science ®Google Scholar
• Egland P. G., Pelletier D. A., Dispensa M., Gibson J., Harwood C. S. A cluster of bacterial genes for anaerobic benzene ring biodegradation. Proc. Natl. Acad. Sci. USA 1997; 94: 6484–6489
   PubMed Web of Science ®Google Scholar
• Elder D. J.E., Kelly D. J. The bacterial degradation of benzoic acid and benzenoid compounds under anaerobic conditions: unifying trends and new perspectives. FEMS Microbiol. Rev. 1994; 13: 441–468
   PubMed Web of Science ®Google Scholar
• Fuenmayor S.L., Wild M., Boyes A. L., Williatns P. A. A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J. Bacteriol. 1998; 180: 2522–2530
   PubMed Web of Science ®Google Scholar
• Fujii T., Nakazawa A., Surni N., Tani H., Ando A., Yabuki M. Utilization of alcohols by Rhodopseudomonas sp. No.7. isolated from n-propanol-enrichment cultures. Agric. Biol. Chem. 1983; 47: 2747–27
   Google Scholar
• Gibson D. T., Subramanian V. Microbial degradation of aromatic hydrocarbons. Microbial degradation of organic compounds, D. T. Gibson. Marcel Dekker, Inc., New York 1984; 181–252
   Google Scholar
• Gibson J., Harwood C. S. Degradation of aromatic compounds by nonsulfur purple bacteria. Anoxygenic Photosynthetic Bacteria. Advances in Photosynthesis, R. E. Blankenship, M. T. Madigan, C. E. Bailer. Kluwer Academic Publishers, Netherlands 1995; 991–11003
   Google Scholar
• Gibson K. J., Gibson J. Potential early intermediates in anaerobic benzoate degradation by. Rhodopseu-domonos palustris, Appl.Environ. Microbiol 1992; 58: 696–698
   PubMed Web of Science ®Google Scholar
• Goodwin T. W., Mercer E. I. Introduction to Plant Biochemistry, 2nd ed. I'ergamon Press, Oxford 1983
   Google Scholar
• Haak B., Fetzner S., Lingens F. Cloning, nucle-otide sequence, and expression of plasniid-encoded genes for the two-component 2-halobenzoate 1,2-dioxy-genase from Pseudomonas cepacia 2CBS. J. Bacteriol. 1995; 177: 667–675
   PubMed Web of Science ®Google Scholar
• Harborne J. B. Plant phenolics. Secondary plant products, Vol. 8, Encyclopedia of Plant Physiology, E. A. Bell, B. V. Charlwood. Springer-Verlag, New York 1980; 329–399
   Google Scholar
• Harwood C. S., Gibson J. Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium. Rhodopseudomonas palustris. Appl. Environ Microbiol. 1988; 54: 712–717
   PubMed Web of Science ®Google Scholar
• Healy J. B., Jr., Young L. Y., Reinhard M. Metha-nogenic decomposition ot ferrilic acid, a model lignin derivative. Appl Environ. Microbial. 1980; 39: 436–444
   PubMed Web of Science ®Google Scholar
• Hegeman G. D. The metabolism of p-hydroxyben-zoate by Rhodopseudomonas palustrisand its regulation. Arch. Mikrobiol. 1967; 59: 143–148
   PubMedGoogle Scholar
• Lnui M., Dumay V., Zahn K., Yamagata H., Yukawa H. Structural and functional analysis of the phos-phoenolpyruvate carboxylase gene from the purple non-sulfur bacterium Rhodopseudomonas palustris No.7. J. Bacteriol. 1997; 179: 4942–4945
   PubMed Web of Science ®Google Scholar
• Inui M., Nakata K., Roh J. H., Zahn K., Yukawa H. Molecular and functional characterization of the Rhodopseudomonas palustris No.7 phosphoenolpyruvate carboxykinase gene. J. Bacteriol. 1999; 181: 2689–2696
   PubMed Web of Science ®Google Scholar
• Kulakov L. A., Deleroix V. A., Larkin M. J., Ksenzenko V. N., Kulakova A. N. Cloning of new Rhodococcus extradiol dioxygenase gene.; and study of their distribution in different. Rhodococcus trains 1997, (unpublished)
   Google Scholar
• Merkel S. M., Eberhard A. E., son J., Harwood C. S. Involvement of Coenzyme A thioesters in anaerobic metabolism of 4-hydroxybenzoate by. Rhodopseu-domonas palustris, J. Bacteriol. 1989; 171: 1–7
   PubMed Web of Science ®Google Scholar
• Miller V. L., Mekalanos J. J. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerne. requires. toxR. J, Bacteriol. 1988; 170: 2575–2583
   PubMed Web of Science ®Google Scholar
• Neidle E. L., Hartnelt C., Ornston L. N., Bairoch A., Rekik M., Harayama S. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J. Bacteriol. 1991; 173: 5385–5395
   PubMed Web of Science ®Google Scholar
• Romiae M. F., Stillwell L. C., Wong K.-K., Thurston S. J., Sisk E. C., Sensen C. W., Gaasterland T., Saffer J. P., Fredrickson J. K. Complete sequence of a 184 kb catabolic plasmid from Sphingomonas aromaticivorans. Strain F199 1998, (unpublished)
   Google Scholar
• Sato S. I., Ouchiyama N., Kimura T., Nojiri H., Yamane H., Omori T. Cloning of genes involved in car-bazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase. J. Bacteriol. 1997; 179: 4850–4858
   PubMed Web of Science ®Google Scholar
• Schmid A., Rothe B., Altenbuchner J., Ludwig W., Engesser K. H. Characterization of three distinct extradiol dioxygenases involved in mineralization of dibenzofuran by Terrabacter sp. strain DP0360. J. Bacteriol. 1997; 179: 53–62
   PubMed Web of Science ®Google Scholar
• Shepherd J. M., Lloyd-Jones G. Novel carbazole degradation genes of Sphingomonas CB3: sequence analysis, transcription and molecular ecology. Biochem. Bio-phys. Res. Cominun. 1998; 247: 129–135.
   Web of Science ®Google Scholar
• Simon M. J., Osslund T. D., Saunder R., Ensley B. D., Suggs S., Harcourt A. A., Suen W-C., Cruden D. L., Gibson D. T., Zylstra G. J. Sequences of genes encoding naphthalene dioxygenase in Pseudoinoilus putida strain G7 and NCIB 9816–4. Gene 1993; 127: 31–37
   PubMed Web of Science ®Google Scholar
• Takizawa N., Kaida N., Torigoe S., Moritani T., Sawada T., Satoh S., Kiyohara H. Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J Bacteriol. 1994; 176: 2444–2449
   PubMed Web of Science ®Google Scholar