References
- Bonfield J. K., Staden R. The application of numerical estimates of base calling accuracy to DNA sequencing projects. Nucleic Acids Res. 1995; 23: 1406–1410
- Burks C., Engle M. L., Forrest S., Parsons R. J., Soderlund C. A., Stolorz P. E. Stochastic optimization tools for genomic sequence assembly. Automated DNA sequencing and analysis, U. C. Venter, M. D. Adams, C. Fields. Academic Press, London 1994
- Dear S., Staden R. A sequence assembly and editing program for efficient management of large projects. Nucl. Acids Res. 1991; 19: 3907–3911
- Dear S., Staden R. A standard file format for data from DNA sequencing instruments. DNA Sequence 1992; 3: 107–110
- Gleizes A., Henaut A. A global approach for contig construction. Comput. Applic. Biosci. 1994; 10: 401–408
- Huang X. A contig assembly program based on sensitive detection of fragment overlaps. Genomics 1992; 14: 18–25
- Jurka J., Walichiewicz J., Milosavljevic A. Prototypic sequences for human repetitive DNA. J. Mol. Evol. 1992; 35: 286–291
- Lawrence C. B., Honda S., Parrot N. W., Flood T. C., Gu L., Zhang L., Mudita J., Larson S., Myers E. W. The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing. Genomics 1994; 23: 192–201
- Pearson W. R. Using the FASTA program to search protein and DNA sequence databases. Methods in molecular biology, A. M. Griffin, H. G. Griffin. Humana Press Inc., Totawa, NJ 1994; Vol 25: 365–389
- Petola H., Soderland H., Ukkonen E. SEQAID: a DNA sequence assembly program based on a mathematical model. Nucleic Acids Res. 1984; 12: 307–321
- Smith S., Welch W., Jakimcius A., Dahlberg T., Preston E., Van Dyke D. High throughput DNA sequencing using an automated electrophoresis analysis system and a novel sequence assembly program. Bio Techniques 1993; 14: 1014–1018
- Staden R. A strategy of DNA sequencing employing computer programs. Nucleic Acids Res. 1979; 7: 2601–2610
- Staden R. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing. Nucl. Acids Res. 1982; 10: 4731–4751
- Staden R. The Staden package. Methods in molecular biology, A. M. Griffin, H. G. Griffin. Humana Press Inc., Totawa, NJ 1994; Vol 25: 9–170