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Original Article

DNA Fingerprint Analysis in Acute Leukemias

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Pages 27-33 | Published online: 01 Jul 2009

References

  • Cheson B.D., Cassileth P.A., Head D.R., et al. Report of the National Cancer Institute-sponsored workshop on definitions of diagnosis and response in acute myeloid leukemia. J. Clin. Oncol 1990; 8: 813–819
  • Hoelzer D., Thiel E., Loffler H., et al. Prognostic factors in a multicenter study for treatment of acute lymphoblastic leukemia in adults. Blood 1988; 7: 123–131
  • Bennett J.M., Andersen J.W., Cassileth P.A. Long term survival in acute myeloid leukemia: the Eastern Cooperative Oncology Group (ECOG) experience. Leuk. Res. 1991; 15: 223–227
  • Ramel C. Mutation spectrum in carcinogenicity. Mechanisms of environmental mutagenesis-carcinogenesis, A. Kappas. Plenum Press, New York 1990; 3–24
  • Rowley J.D., Aster J.C., Sklar J. The clinical applications of new DNA diagnostic technology on the management of cancer patients. JAMA 1993; 270: 2331–2337
  • Blick M., Westin E., Guttermann J., et al. Oncogene expression in human leukemia. Blood 1984; 64: 1234–1245
  • Miwa H., Kita K., Saya H., et al. Structural alterations of the p53 gene in human leukemias. Leuk. Res. 1992; 16: 1105–1112
  • Jeffreys A.J., Wilson V., Thein S.L. Hypervariable ‘minisatellite’ regions in human DNA. Nature 1985; 314: 67–73
  • Nakamura Y., Leppert M., O'Connell P., et al. Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 1987; 235: 1616–1662
  • Wong Z., Wilson V., Jeffreys A.J., Thein S.L. Cloning a selected fragment from a human DNA ‘fingerprint’: isolation of an extremely polymorphic minisatellite. Nucleic Acids Res. 1986; 14: 4605–1616
  • Vassart G., Georges M., Monsieur R., Brocas H., Lequarre A.S., Christophe D. A sequence in M13 phage detects hypervariable minisatellites in human and animal DNA. Science 1987; 235: 683–684
  • Jeffreys A.J., Neumann R., Wilson V. Repeat unit sequence variation in minisatellites: a novel source of DNA polymorphism for studying variation and mutation by single molecule analysis. Celt 1990; 60: 473–485
  • Aldridge J., Kunkel L., Bruns G., et al. A strategy to reveal high-frequency RFLPs along the human X chromosome. Am. J. Hum. Genet. 1984; 36: 546–564
  • Vergnaud G., Mariat D., Zoroastro M., Lauthier V. Detection of single and multiple polymorphic loci by synthetic tandem repeats of short oligonucleotides. Electrophoresis 1991; 12: 134–140
  • Haberfeld A., Cahaner A., Yoffe O., Plotsky Y., Hillel J. DNA fingerprints of farm animals generated by microsatellite and minisatellite DNA probes. Anim. Genet. 1991; 22: 299–305
  • Schäfer R., Zischler H., Birsner U., Becker A., Epplen J.T. Optimized oligonucleotide probes for DNA fingerprinting. Electrophoresis 1988; 9: 369–374
  • Epplen J.T., Ammer H., Epplen C., et al. Oligonucleotide fingerprinting using simple repeat motifs: aconvenient, ubiquitously applicable method to detect hypervariability for multiple purposes. Experientia Suppl 1991; 58: 50–69
  • Nanda I., Zischler H., Epplen C., Guttenbach M., Schmid M. Chromosomal organization of simple repeated DNA sequences used for DNA fingerprinting. Electrophoresis 1991; 12: 193–203
  • Weber J.L., May P.E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 1989; 44: 388–396
  • Jeffreys A.J., Royle N.J., Wilson V., Wong Z. Spontaneous mutation rates to new length alleles at tandem-repetitive hypervariable loci in human DNA. Nature 1988; 332: 278–281
  • Bock S., Epplen J.T., Noll-Puchta H., et al. Detection of somatic changes in human renal cell carcinomas with oligonucleotide probes specific for simple repeat motifs. Genes Chromosom. Cancer 1993; 6: 113–117
  • Min G.L., Hiddemann W., Arthur C.K., Apperley J.F., Jeffreys A.J., Goldman J.M. Use of minisatellite DNA probes for recognition and characterization of relapse after allogeneic bone marrow transplantation. Br. J. Haematol. 1988; 68: 195–201
  • Yam P., Petz L.D., Ali S., Stock A.D., Wallace R.B. Development of a single probe for documentation of chimerism following bone marrow transplantation. Am. J. Hum. Genet. 1987; 41: 867–881
  • Hübner G., Battmer K., Paaz U., Link H. Monitoring of relapse and remission in acute leukaemias by DNA-fingerprint analysis. Br. J. Haematol. 1993; 85: 320–325
  • Suttorp M., Schmitz N., Dreger P., Schaub J., Loffler H. Monitoring of chimerism after allogeneic bone marrow transplantation with unmanipulated marrow by use of DNA polymorphisms. Leukemia 1993; 7: 679–687
  • Jeffreys A.J., Wilson V., Neumann R., Keyte J. Amplification of human minisatellites by the polymerase chain reaction: towards DNA fingerprinting in single cells. Nucleic Acids Res. 1988; 16: 10953–10971
  • Ugozzoli L., Yam P., Petz L.D., et al. Amplification by the polymerase chain reaction of hypervariable regions of the human genome for evaluation of chimerism after bone marrow transplantation. Blood 1991; 77: 1607–1615
  • Lawler M., Humphries P., McCann S.R. Evaluation of mixed chimerism by in vitro amplification of dinucleotide repeat sequences using the polymerase chain reaction. Blood 1991; 77: 2504–2514
  • Jeffreys A.J., Brookfield J. F. Y., Semeonoff R. Positive identification of an immigration test-case using human DNA fingerprints. Nature 1985; 317: 818–819
  • Roewer L., Rie O., Prokop O. Hybridization and polymerase chain reaction amplification of simple repeated DNA sequences for the analysis of forensic stains. Electrophoresis 1991; 12: 181–186
  • Fowler J. C. S., Burgoyne L.A., Scott A.C., Harding H. W. J. Repetitive deoxyribonucleic acid (DNA) and human genome variation-a concise review relevant to forensic biology. J. Forensic Sci. 1988; 33: 1111–1126
  • Hane B., Tummler M., Jager K., Schleithoff L., Janssen J.W., Drexler H.G. Differences in DNA fingerprints of continuous leukemia-lymphoma cell lines from different sources. Leukemia 1992; 6: 1129–1133
  • Fey M.F., Tobler A. Assessment of DNA ‘fingerprinting’ as a method for validating the identity of cancer cell lines maintained in long-term culture. Nucleic Acids Res. 1991; 19: 3464
  • Thein S.L., Jeffreys A.J., Gooi H.C., et al. Detection of somatic changes in human cancer DNA by DNA-fingerprint analysis. Br. J. Cancer 1987; 55: 353–356
  • Lagoda P. J. L., Seitz G., Epplen J.T., Issinger O.-G. Increased detectability of somatic changes in the DNA from human tumours after probing with “synthetic” and “genome-derived” hypervariable multilocus probes. Hum. Genet. 1989; 84: 35–40
  • White J.J., Neuwirth H., Miller C.D., Schneider E.L. DNA alterations in prostatic adenocarcinoma and benign prostatic hyperplasia: Detection by DNA fingerprint analyses. Mutat. Res. 1990; 237: 37–43
  • Nürnberg P., Barth I., Fuhrmann E., et al. Monitoring genomic alterations with a panel of oligonucleotide probes specific for various simple repeat motifs. Electrophoresis 1991; 12: 186–192
  • Chen P., Hurst T., Khoo S.K. Detection of somatic DNA alterations in ovarian cancer by DNA fingerprint analysis. Cancer 1991; 67: 1551–1555
  • Bettink S., Wullich B., Christmann A., Zwergel T., Zang K.D., Unteregger G. Genetic heterogeneity of prostatic carcinoma-derived cell lines as emphasized by DNA fingerprinting. Electrophoresis 1992; 13: 644–646
  • Mehle C., Ljungberg B., Stenling R., Roos G. DNA fingerprinting of renal cell carcinoma with special reference to tumor heterogeneity. Genes Chromosom. Cancer 1993; 6: 86–91
  • Nümberg P., Zischler H., Fuhrmann E., et al. Coamplification of simple repetitive DNA fingerprint fragments and the EGFR gene in human gliomas. Genes Chromosom. Cancer 1991; 3: 79–88
  • Helminen P. Does chemotherapy of hematological malignancies affect DNA fingerprint pattern?. Leuk. Res. 1992; 16: 133–138
  • Nelson M., McClelland M. The effect of site-specific methylation on restriction-modification enzymes. Nucleic Acids Res. 1987; 15:Suppl: 219–230
  • Yunis J.J., Brunning R.D. Prognostic significance of chromosomal abnormalities in acute leukaemias and myelodysplastic syndromes. Clin. Haematol. 1986; 15: 597–620
  • Bloomfield C.D., Seeker-Walker L.M., Goldman A.I., et al. Six-year follow-up of the significance of karyotype in acute lymphoblastic leukemia. Cancer Genet. Cytogenet. 1989; 40: 171–185
  • Kawasaki E.S., Clark S.S., Coyne M.Y., et al. Diagnosis of chronic myeloid and acute lymphocytic leukemias by detection of leukemia-specific mRNA sequences amplified in vitro. Proc. Natl. Acad. Sci. USA 1988; 85: 5698–5702
  • Lee M.S., Chang K.S., Freireich E.S., et al. Detection of minimal residual bcr/abl transcripts by a modified polymerase chain reaction. Blood 1988; 72: 893–897
  • Morgan G.J., Hughes T.P., Janssen J. W. G., et al. Polymerase chain reaction for detection of residual leukaemia. Lancet 1989; I: 928–929
  • Dobrovic A., Trainor K.J., Morley A.A. Detection of the molecular abnormality in chronic myeloid leukemia by use of the polymerase chain reaction. Blood 1988; 72: 2063–2065
  • Wright J.J., Poplack D.G., Bakhshi A., et al. Gene rearrangements as markers of clonal variation and minimal residual disease in acute lymphoblastic leukemia. J. Clin. Oncol. 1987; 5: 735–741
  • Ozaki M., Asada M., Tamura C., et al. Molecular analysis of 5′ J region of immunoglobulin heavy chain gene in human acute leukemias. Leukemia 1990; 4: 415–418
  • Katz F., Ball L., Gibbons B., Chessells J. The use of DNA probes to monitor minimal residual disease in childhood acute lymphoblastic leukaemia. Br. J. Haematol. 1989; 73: 173–180
  • Deane M., Pappas H., Norton J.D. Immunoglobulin heavy chain gene fingerprinting reveals widespread oligoclonality in B-lineage acute lymphoblastic leukemia. Leukemia 1991; 5: 832–838
  • D'Auriol L., Macintyre E., Galibert F., Sigaux F. In vitro amplification of T cell gamma gene rearrangements: a new tool for the assessment of minimal residual disease in acute lymphoblastic leukemias. Leukemia 1989; 3: 155–158
  • Hansen-Hagge T.E., Yokota S., Bartram C.R. Detection of minimal residual disease in acute lymphoblastic leukemia by in vitro amplification of rearranged T-cell receptor delta chain sequences. Blood 1989; 74: 1762–1767
  • Campana D., Yokota S., Coustan-Smith E., Hansen-Hagge T.E., Janossy G., Bartram C.R. The detection of residual acute lymphoblastic leukemia cells with immunologic methods and polymerase chain reaction: a comparative study. Leukemia 1990; 4: 609–614
  • Pakkala S. DNA fingerprinting in the detection of residual disease in acute leukemia. Leukemia 1991; 5: 437–440
  • Pakkala S., Helminen P., Saarinen U.M., Alitalo R., Peltonen L. Differences in DNA-fingerprints between remission and relapse in childhood acute lymphoblastic leukemia. Leuk. Res. 1988; 12: 757–762
  • Fenaux P., Preudhomme C., Lai J.L., Morel P., Beuscart R., Bauters F. Cytogenetics and their prognostic value in de novo acute myeloid leukaemia: a report on 283 cases. Br. J. Haematol. 1989; 73: 61–67
  • Keating M.S., Smith T.L., Kantarjian H., et al. Cytogenetic pattern in acute myelogenous leukemia: a major reproducible determinant of outcome. Leukemia 1988; 2: 403–412
  • Castaigne S., Balitrand N., de TH H., Dejean A., Degos L., Chomienne C. A PML/retinoic acid receptor fusion transcript is constantly detected by RNA-based polymerase chain reaction in acute promyelocytic leukemia. Blood 1992; 79: 3110–3115
  • Chang K.S., Stass S.A., Chu D.T., Deaven L.L., Trujillo J.M., Freireich E.J. Characterisation of a fusion cDNA (RARA/myl) transcribed from the t(15; 17) breakpoint in acute promyelocytic leukemia. Mol. Cell. Biol. 1992; 12: 800–810
  • Nucifora G., Birn D.J., Erickson P., et al. Detection of DNA rearrangements in the AML1 and ETO loci and of an AML1/ETO fusion mRNA in patients with t(8;21) AML. Blood 1993; 81: 883–888
  • Chang K.S., Fan Y.H., Stass S.A., et al. Expression of AML1-ETO fusion transcripts and detection of minimal residual disease in t(8;21)-positive acute myeloid leukemia. Oncogene 1993; 8: 983–988
  • Miller W.H., Jr., Kazizuka A., Frankel S.R., et al. Reverse transcriptase polymerase chain reaction for the rearranged retionic acid receptor a clarifies diagnosis and detects minimal residual disease acute promyelocytic leukemia. Proc. Natl. Acad. Sci. USA 1992; 89: 2694–2698
  • Lo Coco F., Diverio D., Pandolfi P.P., et al. Molecular evaluation of residual disease as a predictor of relapse in acute promyelocytic leukaemia. Lancet 1992; 340: 1437–1438
  • Laczika K., Mitterbauer G., Kominger L., et al. Rapid achievement of PML-RARa polymerase chain reaction (PCR)-negativity by combined treatment with all-trans-retinoic acid and chemotherapy in acute promyelocytic leukemia: a pilot study. Leukemia 1994; 8: 1–5
  • Nucifora G., Larson R.A., Rowley J.D. Persistence of the 8;21 translocation in patients with acute myeloid leukemia type M2 in long-term remission. Blood 1993; 82: 712–715
  • McClain K.L. Expression of oncogenes in human leukemias. Cancer Res. 1984; 44: 5382–5389
  • Dubreuil P., Torres H., Courcoul M.-A., Birg F., Mannoni P. c-fms expression is a molecular marker of human acute myeloid leukemias. Blood 1988; 72: 1081–1085
  • Preisler H.D., Kinniburgh A.J., Wei-Dong K., Khan S. Expression of the protooncogenes c-myc, c-fos, and c-fms in acute myelocytic leukemia at diagnosis and in remission. Cancer Res. 1987; 47: 874–880
  • Sariban E., Mitchell T., Kufe D. Expression of the c-fms protooncogene during human monocytic differentiation. Nature 1985; 316: 64–66
  • Nienhuis A.W., Bunn H.F., Turner P.H., et al. Expression of the human c-fms protooncogene in hematopoietic cells and its deletion in the 5q-syndrome. Cell 1985; 42: 421–428
  • Lubbert M., Herrmann F., Koeffler H.P. Expression and regulation of myeloid-specific genes in normal and leukemic myeloid cells. Blood 1991; 77: 909–924
  • Bos J.L., Verlaan de Vries M., van der Eb A., et al. Mutations in N-ras predominate in acute myeloid leukemia. Blood 1987; 69: 1237–1241
  • Liu E., Hjelle B., Morgan R., Hecht F., Bishop J.M. Mutations of the Kirsten-ras proto-oncogene in human preleukemia. Nature 1987; 300: 186–188
  • Janssen J. W. G., Steenvoorden A. C. M., Lyons J., et al. RAS gene mutations in acute and chronic myelocytic leukemias, chronic myeloproliferative disorders, and myelodysplastic syndromes. Proc. Natl. Acad. Sci. USA 1987; 84: 9228–9232
  • Needleman S.W., Kraus M.H., Srivastava S.K., Levine P.H., Aaronson S.A. High frequency of N-ras activation in acute myelogenous leukemia. Blood 1986; 67: 753–757
  • Farr C.J., Saiki R.K., Erlich H.A., McCormick F., Marshall C.J. Analysis of ras gene mutations in acute myeloid leukemia by polymerase chain reaction and oligonucleotide probes. Proc. Natl. Acad. Sci. USA 1988; 85: 1629–1633
  • Pakkala S., Helminen P., Ruutu T., Saarinen U.M., Peltonen L. New molecular markers in AML: DNA-fingerprint differences between leukemic phase and remission in acute myeloid leukemia. Leuk. Res. 1989; 13: 907–913
  • Thein S.L., Oscier D.G., Jeffreys A.J., et al. Detection of chromosomal 7 loss in myelodysplasia using an extremely polymorphic DNA probe. Br. J. Cancer 1988; 57: 131–134
  • Mars W.M., van Tuinen P., Drabkin H.A., White J.W., Saunders G.F. A myeloid related sequence that localizes to human chromosome 8q21.1–22. Blood 1988; 71: 1713–1719
  • Neel B.G., Jhanwar S.C., Chaganli R. S. K., Hayward W.S. Two human c-onc genes are located on the long arm of chromosome 8. Proc. Nail. Acad. Sci. USA 1982; 79: 7842–7846
  • Pakkala S., Knuutila S., Helminen P., Ruutu T., Saarinen U.M., Peltonen L. DNA-fingerprintchanges compared to karyotypes in acute leukemia. Leukemia 1990; 4: 866–870
  • Weitzel J.N., Hows J.M., Jeffreys A.J., Min G.L., Goldman J.M. Use of a hypervariable minisatellite DNA probe (33.15) for evaluating engraftment two or more years after bone marrow transplantation for aplastic anaemia. Br. J. Haematol. 1988; 70: 91–97
  • Knowlton R.G., Brown V.A., Braman J.C., et al. Use of highly polymorphic DNA probes for genotypic analysis following bone marrow transplantation. Blood 1986; 68: 378–385
  • Paaz U., Battmer K., Hübner G., Link H. DNA-polymorphism-analysis after bone marrow transplantation using RFLP, PCR, and in-situ-hybridization: a method of early proof of leukemic relapse. Onkologie 1991; 14(Suppl. 2)120
  • Roth M.S., Antin J.H., Bingham E.L., Ginsburg D. Use of polymerase chain reaction-detected sequence polymorphisms to document engraftment following allogeneic bone marrow transplantation. Transplantation 1990; 49: 714–720
  • Williams J. G. K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990; 18: 6531–6535
  • Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 1990; 18: 7213–7218
  • Martin G.B., Williams J. G. K., Tanksley S.D. Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines. Proc. Natl. Acad. Sci. USA 1991; 88: 2336–2340
  • Peinado M.A., Malkhosyan S., Velazquez A., Perucho M. Isolation and characterization of allelic losses and gains in colorectal tumors by arbitrarily primed polymerase chain reaction. Proc. Natl. Acad. Sci. USA 1992; 89: 10065–10069
  • Ionov Y., Peinado M.A., Malkhosyan S., Shibata D., Perucho M. Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis. Nature 1993; 363: 558–561

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