Publication Cover
Archives of Physiology and Biochemistry
The Journal of Metabolic Diseases
Volume 116, 2010 - Issue 4-5
115
Views
17
CrossRef citations to date
0
Altmetric
Original Article

ProteoMiner and SELDI-TOF-MS: A robust and highly reproducible combination for biomarker discovery from whole blood serum

, , , , , & show all
Pages 174-180 | Received 19 Apr 2010, Accepted 09 Jun 2010, Published online: 22 Jul 2010

References

  • Aivado M, Spentzos D, Alterovitz G, Out HH, Grall F, Giagounidis AA, Wells M, Cho JY, Germing U, Czibere A et al. (2005). Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling. Clin Chem Lab Med 43(2):133–40.
  • Aivado M, Spentzos D, Germing U, Alterovitz G, Meng XY, Grall F, Giagounidis AA, Klement G, Steidl U, Otu HH et al. (2007). Serum proteome profiling detects myelodysplastic syndromes and identifies CXC chemokine ligands 4 and 7 as markers for advanced disease. PNAS 104(4):1307–12.
  • Allen J, Davey HM, Broadhurst D, Heald JK, Rowland JJ, Oliver SG, Kell DB (2003). High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. Nat Biotechnol 21(6):692–6.
  • Anderson NL, Anderson NG. (2002). The human plasma proteome: History, character, and diagnostic prospects. Mol Cell Proteomics 1(11):845–67.
  • De Bock M, de Seny D, Meuwis MA, Chapelle JP, Louis E, Malaise M, Merville MP, Fillet M. (2010). Challenges for biomarker discovery in body fluids using SELDI-TOF-MS. J Biomed Biotechnol epub ahead of print doi:10.1155/2010/906082. Review. E-pub ahead of print.
  • Engwegen JYMN, Mehra N, Haanen JBAG, Bonfrer JMG, Schellens JHM, Voest EE, Beijnen JH. (2007). Validation of SELDI-TOF MS serum protein profiles for renal cell carcinoma in new populations. Lab Invest 87(2):161–72.
  • Gast MCW, Engwegen JYMN, Schellens JHM, Beijnen JH. (2008). Comparing the old and new generation SELDI-TOF MS: Implications for serum protein profiling. BMC Med Genomics 1(4):1–12.
  • Guerrier L, Righetti PG, Boschetti E. (2008). Reduction of dynamic protein concentration range of biological extracts for the discovery of low-abundance proteins by means of hexapeptide ligand library. Nat Protoc 3(5):883–90.
  • Hartwig S, Czibere A, Kotzka J, Passlack W, Haas R, Eckel J, Lehr S. (2009). Combinatorial hexapeptide ligand libraries (ProteoMiner™): An innovative fractionation tool for differential quantitative clinical proteomics. Arch Physiol Biochem 115(3):155–60.
  • Huang H, Stasyk T, Morandell S, Mogg M, Schreiber M, Feuerstein I, Huck CW, Stecher G, Bonn GK, Huber LA. (2005). Enrichment of low-abundant serum proteins by albumin/immunoglobulin G immunoaffinity depletion under partly denaturing conditions. Electrophoresis 26(14):2843–9.
  • Ishida Y, Yamashita K, Sasaki H, Takajou I, Kubuki Y, Morishita K, Tsubouchi H, Okayama A. (2008). Activation of complement system in adult T-cell leukemia (ATL) occurs mainly through lectin pathway:a serum proteomic approach using mass spectrometry. Cancer Lett 271(1):167–77.
  • Kiehntopf M, Siegmund R, Deufel T. (2008). Use of SELDI-TOF mass spectrometry for identification of new biomarkers: potential and limitations. Clin Chem Lab Med 45(11):1435–49. Review.
  • Kwak J, Tian-Ze M, Yoo MJ, Choi BH, Kim HG, Kim SR, Yim CY, Kwak YG. (2004). The comparative analysis of serum proteomes for the discovery of biomarkers for acute myeloid leukemia. Exp Hematol 32(9):836–42.
  • Lehr S, Kotzka J, Avci H, Knebel B, Müller S, Hanisch FG, Jacob S, Haak C, Susanto F, Müller-Wieland D. (2005). Effect of sterol regulatory element binding protein-1a on the mitochondrial protein pattern in human liver cells detected by 2D-DIGE. Biochemistry 44(13):5117–28.
  • Mohamedali A, Guinn B, Sahu S, Thomas NS, Mufti GJ. (2009). Serum profiling reveals distinctive proteomic markers in chronic myeloid leukaemia patients. Br J Haematol 144(2):362–5.
  • Purohit PV, Rocke DM. (2003). Discriminant models for high-throughput proteomics mass spectrometer data. Proteomics 3(9):1699–703.
  • Rai AJ, Gelfand CA, Haywood BC, Warunek DJ, Yi J, Schuchard MD, Mehigh RJ, Cockrill SL, Scott GBI, Tammen H et al. (2005). HUPO plasma proteome project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples. Proteomics 5(13):3262–77.
  • Thulasiraman V, Lin S, Gheorghiu L, Lathrop J, Lomas L, Hammond D, Boschetti E. (2005). Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands. Electrophoresis 26:3561–71.
  • Trimpin S, Inutan ED, Herath TN, McEwen CN. (2010). Matrix-assisted laser desorption/ionization mass spectrometry method for selectively producing either singly or multiply charged molecular ions. Anal Chem 82(1):11–5.
  • Unwin RD, Whetton AD. (2007). How will haematologists use proteomics? Blood Reviews 21(6):315–326.
  • Ward DG, Suggett N, Cheng Y, Wei W, Johnson H, Billingham LJ, Ismail T, Wakelam MJO, Johnson PJ, Martin A. (2006). Identification of serum biomarkers for colon cancer by proteomic analysis. Br J Cancer 94(12):1898–905.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.