Biochemical characterization of the δ-carbonic anhydrase from the marine diatom Thalassiosira weissflogii, TweCA

References

• Fernie AR, Obata T, Allen AE, et al. Leveraging metabolomics for functional investigations in sequenced marine diatoms. Trends Plant Sci 2012;17:395–403
   PubMed Web of Science ®Google Scholar
• Giordano M, Beardall J, Raven JA. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu Rev Plant Biol 2005;56:99–131
   PubMed Web of Science ®Google Scholar
• Bowler C, Vardi A, Allen AE. Oceanographic and biogeochemical insights from diatom genomes. Ann Rev Mar Sci 2010;2:333–65
   PubMed Web of Science ®Google Scholar
• Depauw FA, Rogato A, Ribera d'Alcala M, Falciatore A. Exploring the molecular basis of responses to light in marine diatoms. J Exp Bot 2012;63:1575–91
   PubMed Web of Science ®Google Scholar
• Ashida H, Saito Y, Kojima C, et al. A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO. Science 2003;302:286–90
   PubMed Web of Science ®Google Scholar
• Sultemeyer DF, Miller AG, Espie GS, et al. Active CO2 transport by the green alga Chlamydomonas reinhardtii. Plant Physiol 1989;89:1213–19
   PubMed Web of Science ®Google Scholar
• Harada H, Nakatsuma D, Ishida M, Matsuda Y. Regulation of the expression of intracellular beta-carbonic anhydrase in response to CO2 and light in the marine diatom Phaeodactylum tricornutum. Plant Physiol 2005;139:1041–50
   PubMed Web of Science ®Google Scholar
• Tanaka Y, Nakatsuma D, Harada H, et al. Localization of soluble beta-carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Sorting to the chloroplast and cluster formation on the girdle lamellae. Plant Physiol 2005;138:207–17
   PubMed Web of Science ®Google Scholar
• Johnston AM, Raven JA, Beardall J, Leegood RC. Carbon fixation. Photosynthesis in a marine diatom. Nature 2001;412:40–1
   PubMed Web of Science ®Google Scholar
• Roberts K, Granum E, Leegood RC, Raven JA. C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiol 2007;145:230–5
   PubMed Web of Science ®Google Scholar
• Alterio V, Langella E, Viparelli F, et al. Structural and inhibition insights into carbonic anhydrase CDCA1 from the marine diatom Thalassiosira weissflogii. Biochimie 2012;94:1232–41
   PubMed Web of Science ®Google Scholar
• De Simone G, Supuran CT. (In)organic anions as carbonic anhydrase inhibitors. J Inorg Biochem 2012;111:117–29
   PubMed Web of Science ®Google Scholar
• Supuran CT. Carbonic anhydrases as drug targets – an overview. Curr Top Med Chem 2007;7:825–33
   PubMed Web of Science ®Google Scholar
• Supuran CT. Carbonic anhydrases – an overview. Curr Pharm Des 2008;14:603–14
   PubMed Web of Science ®Google Scholar
• Supuran CT, Scozzafava A. Carbonic anhydrases as targets for medicinal chemistry. Bioorg Med Chem 2007;15:4336–50
   PubMed Web of Science ®Google Scholar
• Capasso C, De Luca V, Carginale V et al. Biochemical properties of a novel and highly thermostable bacterial alpha-carbonic anhydrase from Sulfurihydrogenibium yellowstonense YO3AOP1. J Enzyme Inhib Med Chem 2012;27:892–7
   PubMed Web of Science ®Google Scholar
• Capasso C, Supuran CT. Sulfa and trimethoprim-like drugs – antimetabolites acting as carbonic anhydrase, dihydropteroate synthase and dihydrofolate reductase inhibitors. J Enzyme Inhib Med Chem 2013 . [Epub ahead of print]. doi: 10.3109/14756366.2013.787422
   Web of Science ®Google Scholar
• Capasso C, Supuran CT. Anti-infective carbonic anhydrase inhibitors: a patent and literature review. Expert Opin Ther Pat 2013;23:693–704
   PubMed Web of Science ®Google Scholar
• Del Prete S, Isik S, Vullo D, et al. DNA cloning, characterization, and inhibition studies of an alpha-carbonic anhydrase from the pathogenic bacterium Vibrio cholerae. J Med Chem 2012;55:10742–8
   PubMed Web of Science ®Google Scholar
• Del Prete S, Vullo D, De Luca V, et al. A highly catalytically active gamma-carbonic anhydrase from the pathogenic anaerobe Porphyromonas gingivalis and its inhibition profile with anions and small molecules. Bioorg Med Chem Lett 2013;23:4067–71
   PubMed Web of Science ®Google Scholar
• Del Prete S, Vullo D, Scozzafava A, et al. Cloning, characterization and anion inhibition study of the δ-class carbonic anhydrase (TweCA) from the marine diatom Thalassiosira weissflogii. Bioorg Med Chem. 2013 . [Epub ahead of print]. doi: 10.1016/j.bmc.2013.10.045
   PubMed Web of Science ®Google Scholar
• Vullo D, Del Prete S, Osman SM, et al. Sulfonamide inhibition studies of the δ-carbonic anhydrase from the diatom Thalassiosira weissflogii. Bioorg Med Chem Lett. 2013 . [Epub ahead of print]. doi: 10.1016/j.bmcl.2013.11.021
   Web of Science ®Google Scholar
• Lee RBY, Smith JAC, Rickaby REM. Cloning, expression and characterization of the δ-carbonic anhydrase of Thalassiosira weissflogii (Bacillariophyceae). J Phycol 2013;49:170–7
   PubMed Web of Science ®Google Scholar
• Cantalloube H, Labesse G, Chomilier J, et al. Automat and BLAST: comparison of two protein sequence similarity search programs. Comput Appl Biosci 1995;11:261–72
   PubMedGoogle Scholar
• Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003;52:696–704
   PubMed Web of Science ®Google Scholar
• Laemmli UK, Favre M. Maturation of the head of bacteriophage T4. I. DNA packaging events. J Mol Biol 1973;80:575–99
   PubMed Web of Science ®Google Scholar
• Khalifah RG. The carbon dioxide hydration activity of carbonic anhydrase. I. Stop-flow kinetic studies on the native human isoenzymes B and C. J Biol Chem 1971;246:2561–73
   PubMed Web of Science ®Google Scholar
• Carta F, Temperini C, Innocenti A, et al. Polyamines inhibit carbonic anhydrases by anchoring to the zinc-coordinated water molecule. J Med Chem 2010;53:5511–22
   PubMed Web of Science ®Google Scholar
• Chirica LC, Elleby B, Jonsson BH, Lindskog S. The complete sequence, expression in Escherichia coli, purification and some properties of carbonic anhydrase from Neisseria gonorrhoeae. Eur J Biochem 1997;244:755–60
   PubMedGoogle Scholar
• Armstrong JM, Myers DV, Verpoorte JA, Edsall JT. Purification and properties of human erythrocyte carbonic anhydrases. J Biol Chem 1966;241:5137–49
   PubMed Web of Science ®Google Scholar
• Innocenti A, Supuran CT. Paraoxon, 4-nitrophenyl phosphate and acetate are substrates of alpha- but not of beta-, gamma- and zeta-carbonic anhydrases. Bioorg Med Chem Lett 2010;20:6208–12
   PubMed Web of Science ®Google Scholar
• Zhao D, Wu S, Yin Y. Responses of terrestrial ecosystems' net primary productivity to future regional climate change in China. PLoS One 2013;8:e60849
   Web of Science ®Google Scholar
• Feely RA, Sabine CL, Lee K, et al. Impact of anthropogenic CO2 on the CaCO3 system in the oceans. Science 2004;305:362–6
   PubMed Web of Science ®Google Scholar
• Cox EH, McLendon GL, Morel FM, et al. The active site structure of Thalassiosira weissflogii carbonic anhydrase 1. Biochemistry 2000;39:12128–30
   PubMed Web of Science ®Google Scholar